SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2156 2157 2158 2159 2160 2161 2162 2163 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2175 2176 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    433001 5yk6:A (2.8) BS01 3PH ? GO:0007005 ... C5DRQ1 29078410
    433002 5yk6:A (2.8) BS02 3PH ? GO:0007005 ... C5DRQ1 29078410
    433003 5yk7:C (3.799) BS01 PO4 ? GO:0007005 ... C5DRQ1 29078410
    433004 5yka:A (1.448) BS01 CO ? GO:0046872 ... B3DUR4 30092253
    433005 5ykb:A (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433006 5ykb:A (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433007 5ykb:B (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433008 5ykb:B (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433009 5ykb:C (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433010 5ykb:C (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433011 5ykb:D (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433012 5ykb:D (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    433013 5ykd:A (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433014 5ykd:A (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433015 5ykd:B (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433016 5ykd:B (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433017 5ykd:C (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433018 5ykd:C (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433019 5ykd:D (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433020 5ykd:D (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    433021 5yke:B (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433022 5yke:D (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433023 5yke:F (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433024 5yke:H (4.11) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433025 5ykf:A (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433026 5ykf:B (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433027 5ykf:B (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433028 5ykf:C (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433029 5ykf:D (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433030 5ykf:D (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433031 5ykf:E (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433032 5ykf:F (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433033 5ykf:F (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433034 5ykf:G (4.33) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433035 5ykf:H (4.33) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433036 5ykf:H (4.33) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433037 5ykg:A (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433038 5ykg:B (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433039 5ykg:B (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433040 5ykg:C (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433041 5ykg:D (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433042 5ykg:D (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433043 5ykg:E (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433044 5ykg:F (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433045 5ykg:F (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433046 5ykg:G (4.57) BS01 AGS ? GO:0001508 ... Q61743 29594720
    433047 5ykg:H (4.57) BS01 GBM ? GO:0001508 ... A0A1U7R319 29594720
    433048 5ykg:H (4.57) BS02 AGS ? GO:0001508 ... A0A1U7R319 29594720
    433049 5yki:A (2.25) BS01 rna ? GO:0003723 ... Q14671 29490074
    433050 5ykn:A (2.3) BS01 ZN 1.14.11.67 N/A Q8GUI6 29233856
    433051 5ykn:A (2.3) BS02 ZN 1.14.11.67 N/A Q8GUI6 29233856
    433052 5yko:A (2.9) BS01 peptide 1.14.11.67 N/A Q8GUI6 29233856
    433053 5yko:A (2.9) BS02 ZN 1.14.11.67 N/A Q8GUI6 29233856
    433054 5yko:A (2.9) BS03 ZN 1.14.11.67 N/A Q8GUI6 29233856
    433055 5ykp:A (1.68) BS01 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433056 5ykp:A (1.68) BS02 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433057 5ykp:A (1.68) BS03 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433058 5ykp:A (1.68) BS04 OVA 3.4.11.18 GO:0006508 ... P53582 30837307
    433059 5ykt:A (1.57) BS01 PMP 5.4.3.8 GO:0008483 ... Q9HWU0 29684343
    433060 5ykt:B (1.57) BS01 PMP 5.4.3.8 GO:0008483 ... Q9HWU0 29684343
    433061 5ykw:A (2.08) BS01 peptide ? GO:0015035 ... P25372 N/A
    433062 5yl1:A (3.12) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    433063 5yl1:A (3.12) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    433064 5yl2:A (2.09) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433065 5yl2:A (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433066 5yl2:A (2.09) BS03 8WU 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433067 5yl2:B (2.09) BS01 GDP ? GO:0000226 ... P02554 29691282
    433068 5yl2:B (2.09) BS02 8WU ? GO:0000226 ... P02554 29691282 MOAD: Kd=31.69uM
    433069 5yl2:C (2.09) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433070 5yl2:C (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433071 5yl2:C (2.09) BS03 8WU 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433072 5yl2:D (2.09) BS01 GTP ? GO:0000226 ... P02554 29691282
    433073 5yl2:D (2.09) BS02 8WU ? GO:0000226 ... P02554 29691282 MOAD: Kd=31.69uM
    433074 5yl2:F (2.09) BS01 ACP N/A GO:0036211 ... N/A 29691282
    433075 5yl3:A (1.5) BS01 HNN 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 29237270
    433076 5yl4:A (2.64) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    433077 5yl4:A (2.64) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    433078 5yl4:B (2.64) BS01 GDP ? GO:0003924 ... A0A0R4I995 N/A
    433079 5yl4:B (2.64) BS02 8WR ? GO:0003924 ... A0A0R4I995 N/A
    433080 5yl4:C (2.64) BS01 GTP ? GO:0005200 ... A0A0R4I993 N/A
    433081 5yl4:C (2.64) BS02 CA ? GO:0005200 ... A0A0R4I993 N/A
    433082 5yl4:D (2.64) BS01 GTP ? GO:0003924 ... A0A0R4I995 N/A
    433083 5yl4:F (2.64) BS01 ACP N/A GO:0036211 ... N/A N/A
    433084 5yl6:A (2.0) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    433085 5yl6:A (2.0) BS02 AKG ? GO:0006974 ... Q9UT12 N/A
    433086 5yl7:A (1.4) BS01 peptide ? GO:0004252 ... A0A290S6P3 29466378
    433087 5yl7:A (1.4) BS02 CA ? GO:0004252 ... A0A290S6P3 29466378
    433088 5yl7:A (1.4) BS03 CA ? GO:0004252 ... A0A290S6P3 29466378
    433089 5yl7:A (1.4) BS04 CA ? GO:0004252 ... A0A290S6P3 29466378
    433090 5yl7:A (1.4) BS05 CA ? GO:0004252 ... A0A290S6P3 29466378
    433091 5ylb:A (1.79) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    433092 5ylc:A (1.5) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    433093 5yle:A (1.85) BS01 ETA 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    433094 5yle:A (1.85) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    433095 5ylf:A (1.5) BS01 BGC 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    433096 5ylf:A (1.5) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    433097 5ylg:A (1.48) BS01 ZN ? GO:0008061 ... Q0WYK2 N/A
    433098 5ylg:C (1.48) BS01 ZN ? GO:0008061 ... Q0WYK2 N/A
    433099 5yli:A (2.37) BS01 BMA ? N/A K0J0N5 29871927
    433100 5yli:A (2.37) BS02 BMA ? N/A K0J0N5 29871927
    433101 5yli:B (2.37) BS01 BMA ? N/A K0J0N5 29871927
    433102 5yli:B (2.37) BS02 BMA ? N/A K0J0N5 29871927
    433103 5ylj:A (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433104 5ylj:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433105 5ylj:B (2.7) BS01 GDP ? GO:0000226 ... P02554 29691282
    433106 5ylj:B (2.7) BS02 8X0 ? GO:0000226 ... P02554 29691282
    433107 5ylj:C (2.7) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433108 5ylj:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433109 5ylj:D (2.7) BS01 GTP ? GO:0000226 ... P02554 29691282
    433110 5ylj:D (2.7) BS02 8X0 ? GO:0000226 ... P02554 29691282
    433111 5ylj:F (2.7) BS01 ACP N/A GO:0036211 ... N/A 29691282
    433112 5ylk:A (2.09) BS01 BMA ? N/A K0J0N5 29871927
    433113 5ylk:A (2.09) BS02 BMA ? N/A K0J0N5 29871927
    433114 5ylk:A (2.09) BS03 BMA ? N/A K0J0N5 29871927
    433115 5ylk:A (2.09) BS04 BMA ? N/A K0J0N5 29871927
    433116 5ylk:B (2.09) BS01 BMA ? N/A K0J0N5 29871927
    433117 5ylk:B (2.09) BS02 BMA ? N/A K0J0N5 29871927
    433118 5ylk:B (2.09) BS03 BMA ? N/A K0J0N5 29871927
    433119 5yll:A (1.81) BS01 BMA ? N/A K0J0N5 29871927
    433120 5yll:A (1.81) BS02 BMA ? N/A K0J0N5 29871927
    433121 5yll:B (1.81) BS01 BMA ? N/A K0J0N5 29871927
    433122 5yll:B (1.81) BS02 BMA ? N/A K0J0N5 29871927
    433123 5yln:A (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433124 5yln:A (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433125 5yln:B (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433126 5yln:B (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433127 5yln:C (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433128 5yln:C (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433129 5yln:D (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433130 5yln:D (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    433131 5yls:A (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433132 5yls:A (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433133 5yls:A (3.0) BS03 Y50 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433134 5yls:B (3.0) BS01 GDP ? GO:0000226 ... P02554 29691282
    433135 5yls:B (3.0) BS02 Y50 ? GO:0000226 ... P02554 29691282
    433136 5yls:C (3.0) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433137 5yls:C (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433138 5yls:C (3.0) BS03 Y50 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    433139 5yls:D (3.0) BS01 GTP ? GO:0000226 ... P02554 29691282
    433140 5yls:D (3.0) BS02 Y50 ? GO:0000226 ... P02554 29691282
    433141 5yls:F (3.0) BS01 ACP N/A GO:0036211 ... N/A 29691282
    433142 5ylt:A (1.69) BS01 SFG 2.1.1.364 GO:0005694 ... Q8WTS6 29882380 BindingDB: IC50=2500nM
    433143 5ylt:A (1.69) BS02 C7N 2.1.1.364 GO:0005694 ... Q8WTS6 29882380 MOAD: ic50=0.41uM
    433144 5ylu:A (2.79989) BS01 HKT 7.2.2.19 GO:0000166 ... P19156 29618813 BindingDB: IC50=22.0nM
    433145 5ylu:A (2.79989) BS02 MG 7.2.2.19 GO:0000166 ... P19156 29618813
    433146 5ylv:A (2.79978) BS01 8WX 7.2.2.19 GO:0000166 ... P19156 29618813 BindingDB: IC50=101nM
    433147 5ylv:A (2.79978) BS02 MG 7.2.2.19 GO:0000166 ... P19156 29618813
    433148 5ylw:A (1.7) BS01 HEM 1.14.14.175 GO:0004497 ... S4UX02 N/A
    433149 5ylx:A (2.2) BS01 peptide ? GO:0002474 ... H6TIB1 31969884
    433150 5yly:A (1.76) BS01 FAD 1.7.1.1 GO:0016491 ... A0A286R227 29371148
    433151 5yly:B (1.76) BS01 FAD 1.7.1.1 GO:0016491 ... A0A286R227 29371148
    433152 5ylz:A (3.6) BS01 rna ? GO:0000244 ... P33334 29153833
    433153 5ylz:A (3.6) BS02 rna ? GO:0000244 ... P33334 29153833
    433154 5ylz:A (3.6) BS03 rna ? GO:0000244 ... P33334 29153833
    433155 5ylz:A (3.6) BS04 rna ? GO:0000244 ... P33334 29153833
    433156 5ylz:A (3.6) BS05 peptide ? GO:0000244 ... P33334 29153833
    433157 5ylz:A (3.6) BS06 IHP ? GO:0000244 ... P33334 29153833
    433158 5ylz:C (3.6) BS01 rna ? GO:0000244 ... P36048 29153833
    433159 5ylz:C (3.6) BS02 GTP ? GO:0000244 ... P36048 29153833
    433160 5ylz:C (3.6) BS03 MG ? GO:0000244 ... P36048 29153833
    433161 5ylz:I (3.6) BS01 rna ? GO:0000245 ... Q12309 29153833
    433162 5ylz:J (3.6) BS01 rna ? GO:0000350 ... Q03654 29153833
    433163 5ylz:J (3.6) BS02 rna ? GO:0000350 ... Q03654 29153833
    433164 5ylz:K (3.6) BS01 rna ? GO:0000384 ... P53277 29153833
    433165 5ylz:K (3.6) BS02 rna ? GO:0000384 ... P53277 29153833
    433166 5ylz:L (3.6) BS01 rna ? GO:0000282 ... P25337 29153833
    433167 5ylz:L (3.6) BS02 rna ? GO:0000282 ... P25337 29153833
    433168 5ylz:L (3.6) BS03 ZN ? GO:0000282 ... P25337 29153833
    433169 5ylz:L (3.6) BS04 ZN ? GO:0000282 ... P25337 29153833
    433170 5ylz:L (3.6) BS05 ZN ? GO:0000282 ... P25337 29153833
    433171 5ylz:M (3.6) BS01 rna ? GO:0000398 ... P38241 29153833
    433172 5ylz:M (3.6) BS02 ZN ? GO:0000398 ... P38241 29153833
    433173 5ylz:M (3.6) BS03 ZN ? GO:0000398 ... P38241 29153833
    433174 5ylz:N (3.6) BS01 rna ? GO:0000387 ... Q12046 29153833
    433175 5ylz:N (3.6) BS02 rna ? GO:0000387 ... Q12046 29153833
    433176 5ylz:N (3.6) BS03 ZN ? GO:0000387 ... Q12046 29153833
    433177 5ylz:P (3.6) BS01 rna ? GO:0000398 ... Q03772 29153833
    433178 5ylz:P (3.6) BS02 rna ? GO:0000398 ... Q03772 29153833
    433179 5ylz:P (3.6) BS03 rna ? GO:0000398 ... Q03772 29153833
    433180 5ylz:Q (3.6) BS01 rna ? GO:0000350 ... P28004 29153833
    433181 5ylz:Q (3.6) BS02 rna ? GO:0000350 ... P28004 29153833
    433182 5ylz:S (3.6) BS01 peptide ? GO:0000398 ... P53333 29153833
    433183 5ylz:T (3.6) BS01 rna ? GO:0000348 ... P40968 29153833
    433184 5ylz:T (3.6) BS02 rna ? GO:0000348 ... P40968 29153833
    433185 5ylz:a (3.6) BS01 rna ? GO:0000243 ... P40018 29153833
    433186 5ylz:b (3.6) BS01 rna ? GO:0000243 ... Q12330 29153833
    433187 5ylz:c (3.6) BS01 rna ? GO:0000243 ... P54999 29153833
    433188 5ylz:d (3.6) BS01 rna ? GO:0000243 ... P40204 29153833
    433189 5ylz:e (3.6) BS01 rna ? GO:0000243 ... P43321 29153833
    433190 5ylz:f (3.6) BS01 rna ? GO:0000243 ... Q02260 29153833
    433191 5ylz:g (3.6) BS01 rna ? GO:0000243 ... Q06217 29153833
    433192 5ylz:h (3.6) BS01 rna ? GO:0000243 ... P40018 29153833
    433193 5ylz:i (3.6) BS01 rna ? GO:0000243 ... Q12330 29153833
    433194 5ylz:j (3.6) BS01 rna ? GO:0000243 ... P54999 29153833
    433195 5ylz:k (3.6) BS01 rna ? GO:0000243 ... P40204 29153833
    433196 5ylz:l (3.6) BS01 rna ? GO:0000243 ... P43321 29153833
    433197 5ylz:m (3.6) BS01 rna ? GO:0000243 ... Q02260 29153833
    433198 5ylz:n (3.6) BS01 rna ? GO:0000243 ... Q06217 29153833
    433199 5ylz:p (3.6) BS01 rna ? GO:0000398 ... P40567 29153833
    433200 5ym3:A (2.601) BS01 HEM 1.14.14.175 GO:0004497 ... S4UX02 30837155

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).