SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    433601 5ypy:B (1.966) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433602 5ypy:B (1.966) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433603 5ypy:C (1.966) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433604 5ypy:C (1.966) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433605 5ypy:D (1.966) BS01 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433606 5ypy:D (1.966) BS02 VAL 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    433607 5ypz:A (3.521) BS01 peptide ? GO:0016020 ... Q93I73 29941571
    433608 5ypz:A (3.521) BS02 peptide ? GO:0016020 ... Q93I73 29941571
    433609 5ypz:B (3.521) BS01 peptide ? GO:0016020 ... Q93I73 29941571
    433610 5ypz:B (3.521) BS02 peptide ? GO:0016020 ... Q93I73 29941571
    433611 5ypz:C (3.521) BS01 peptide ? GO:0016020 ... Q93I73 29941571
    433612 5ypz:C (3.521) BS02 peptide ? GO:0016020 ... Q93I73 29941571
    433613 5yq0:C (1.76) BS01 CA ? GO:0046872 ... Q93I65 29941571
    433614 5yq0:G (1.76) BS01 CA ? GO:0046872 ... Q93I65 29941571
    433615 5yq1:A (1.58) BS01 ZN 3.4.11.2 GO:0004177 ... P04825 N/A
    433616 5yq1:A (1.58) BS02 0A1 3.4.11.2 GO:0004177 ... P04825 N/A
    433617 5yq2:A (1.6) BS01 ZN 3.4.11.2 GO:0004177 ... P04825 N/A
    433618 5yq2:A (1.6) BS02 GMC 3.4.11.2 GO:0004177 ... P04825 N/A
    433619 5yq7:0 (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433620 5yq7:0 (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433621 5yq7:0 (4.1) BS03 BCL ? GO:0005886 ... Q83XD2 29674684
    433622 5yq7:0 (4.1) BS04 BCL ? GO:0005886 ... Q83XD2 29674684
    433623 5yq7:1 (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433624 5yq7:1 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433625 5yq7:1 (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433626 5yq7:2 (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433627 5yq7:2 (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433628 5yq7:3 (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433629 5yq7:3 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433630 5yq7:3 (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433631 5yq7:3 (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    433632 5yq7:4 (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433633 5yq7:4 (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433634 5yq7:4 (4.1) BS03 BCL ? GO:0005886 ... Q83XD2 29674684
    433635 5yq7:5 (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    433636 5yq7:5 (4.1) BS02 BCL ? GO:0005886 ... Q83XD1 29674684
    433637 5yq7:5 (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    433638 5yq7:6 (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433639 5yq7:6 (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433640 5yq7:6 (4.1) BS03 BCL ? GO:0005886 ... Q83XD2 29674684
    433641 5yq7:7 (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433642 5yq7:7 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433643 5yq7:7 (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433644 5yq7:7 (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    433645 5yq7:8 (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433646 5yq7:8 (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433647 5yq7:8 (4.1) BS03 BCL ? GO:0005886 ... Q83XD2 29674684
    433648 5yq7:9 (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433649 5yq7:9 (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433650 5yq7:9 (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    433651 5yq7:9 (4.1) BS04 BCL ? GO:0005886 ... Q83XD1 29674684
    433652 5yq7:A (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433653 5yq7:A (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433654 5yq7:A (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433655 5yq7:A (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    433656 5yq7:B (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433657 5yq7:B (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433658 5yq7:B (4.1) BS03 BCL ? GO:0005886 ... Q83XD2 29674684
    433659 5yq7:C (4.1) BS01 HEM ? GO:0005506 ... Q83XC9 29674684
    433660 5yq7:C (4.1) BS02 HEM ? GO:0005506 ... Q83XC9 29674684
    433661 5yq7:C (4.1) BS03 HEM ? GO:0005506 ... Q83XC9 29674684
    433662 5yq7:C (4.1) BS04 HEM ? GO:0005506 ... Q83XC9 29674684
    433663 5yq7:D (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433664 5yq7:D (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433665 5yq7:D (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433666 5yq7:D (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    433667 5yq7:E (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433668 5yq7:E (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433669 5yq7:F (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    433670 5yq7:F (4.1) BS02 BCL ? GO:0005886 ... Q83XD1 29674684
    433671 5yq7:G (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433672 5yq7:G (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433673 5yq7:H (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    433674 5yq7:H (4.1) BS02 BCL ? GO:0005886 ... Q83XD1 29674684
    433675 5yq7:H (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    433676 5yq7:H (4.1) BS04 BCL ? GO:0005886 ... Q83XD1 29674684
    433677 5yq7:I (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433678 5yq7:I (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433679 5yq7:J (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433680 5yq7:J (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433681 5yq7:J (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433682 5yq7:K (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433683 5yq7:K (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433684 5yq7:L (4.1) BS01 peptide ? GO:0009772 ... Q83XD0 29674684
    433685 5yq7:L (4.1) BS02 BCL ? GO:0009772 ... Q83XD0 29674684
    433686 5yq7:L (4.1) BS03 BCL ? GO:0009772 ... Q83XD0 29674684
    433687 5yq7:L (4.1) BS04 BPH ? GO:0009772 ... Q83XD0 29674684
    433688 5yq7:L (4.1) BS05 MQE ? GO:0009772 ... Q83XD0 29674684
    433689 5yq7:L (4.1) BS06 FE ? GO:0009772 ... Q83XD0 29674684
    433690 5yq7:L (4.1) BS07 MQE ? GO:0009772 ... Q83XD0 29674684
    433691 5yq7:L (4.1) BS08 BPH ? GO:0009772 ... Q83XD0 29674684
    433692 5yq7:L (4.1) BS09 BPH ? GO:0009772 ... Q83XD0 29674684
    433693 5yq7:M (4.1) BS01 BCL ? GO:0009772 ... Q83XD0 29674684
    433694 5yq7:M (4.1) BS02 BPH ? GO:0009772 ... Q83XD0 29674684
    433695 5yq7:M (4.1) BS03 FE ? GO:0009772 ... Q83XD0 29674684
    433696 5yq7:M (4.1) BS04 MQE ? GO:0009772 ... Q83XD0 29674684
    433697 5yq7:M (4.1) BS05 BCL ? GO:0009772 ... Q83XD0 29674684
    433698 5yq7:M (4.1) BS06 BPH ? GO:0009772 ... Q83XD0 29674684
    433699 5yq7:M (4.1) BS07 BPH ? GO:0009772 ... Q83XD0 29674684
    433700 5yq7:N (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433701 5yq7:N (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433702 5yq7:N (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433703 5yq7:O (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433704 5yq7:O (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433705 5yq7:P (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433706 5yq7:P (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433707 5yq7:P (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433708 5yq7:P (4.1) BS04 KGD ? GO:0005886 ... Q83XD1 29674684
    433709 5yq7:P (4.1) BS05 MQE ? GO:0005886 ... Q83XD1 29674684
    433710 5yq7:Q (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433711 5yq7:Q (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433712 5yq7:R (4.1) BS01 KGD ? GO:0005886 ... Q83XD1 29674684
    433713 5yq7:R (4.1) BS02 BCL ? GO:0005886 ... Q83XD1 29674684
    433714 5yq7:R (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    433715 5yq7:R (4.1) BS04 BCL ? GO:0005886 ... Q83XD1 29674684
    433716 5yq7:S (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433717 5yq7:S (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433718 5yq7:T (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433719 5yq7:T (4.1) BS02 BCL ? GO:0005886 ... Q83XD1 29674684
    433720 5yq7:T (4.1) BS03 KGD ? GO:0005886 ... Q83XD1 29674684
    433721 5yq7:T (4.1) BS04 BCL ? GO:0005886 ... Q83XD1 29674684
    433722 5yq7:U (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433723 5yq7:U (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433724 5yq7:V (4.1) BS01 BCL ? GO:0005886 ... Q83XD1 29674684
    433725 5yq7:V (4.1) BS02 KGD ? GO:0005886 ... Q83XD1 29674684
    433726 5yq7:V (4.1) BS03 BCL ? GO:0005886 ... Q83XD1 29674684
    433727 5yq7:W (4.1) BS01 BCL ? GO:0005886 ... Q83XD2 29674684
    433728 5yq7:W (4.1) BS02 BCL ? GO:0005886 ... Q83XD2 29674684
    433729 5yq7:W (4.1) BS03 KGD ? GO:0005886 ... Q83XD2 29674684
    433730 5yqa:A (1.38) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    433731 5yqa:A (1.38) BS02 8ZU ? GO:0004497 ... Q2IU02 N/A
    433732 5yqb:A (1.56) BS01 ZN 3.4.11.2 GO:0004177 ... P04825 N/A
    433733 5yqb:A (1.56) BS02 0A1 3.4.11.2 GO:0004177 ... P04825 N/A
    433734 5yqb:A (1.56) BS03 GMC 3.4.11.2 GO:0004177 ... P04825 N/A
    433735 5yqg:A (2.1) BS01 peptide ? GO:0002028 ... P68510 29382713
    433736 5yqg:B (2.1) BS01 peptide ? GO:0002028 ... P68510 29382713
    433737 5yqg:C (2.1) BS01 peptide ? GO:0002028 ... P68510 29382713
    433738 5yqg:D (2.1) BS01 peptide ? GO:0002028 ... P68510 29382713
    433739 5yqh:A (2.3) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    433740 5yqh:A (2.3) BS02 8ZX ? GO:0004497 ... Q2IU02 N/A
    433741 5yqh:A (2.3) BS03 8ZX ? GO:0004497 ... Q2IU02 N/A
    433742 5yqh:A (2.3) BS04 8ZX ? GO:0004497 ... Q2IU02 N/A
    433743 5yqh:B (2.3) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    433744 5yqh:B (2.3) BS02 8ZX ? GO:0004497 ... Q2IU02 N/A
    433745 5yqh:B (2.3) BS03 8ZX ? GO:0004497 ... Q2IU02 N/A
    433746 5yqh:C (2.3) BS01 8ZX ? GO:0004497 ... Q2IU02 N/A
    433747 5yqh:C (2.3) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    433748 5yqh:C (2.3) BS03 8ZX ? GO:0004497 ... Q2IU02 N/A
    433749 5yqh:D (2.3) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    433750 5yqh:D (2.3) BS02 8ZX ? GO:0004497 ... Q2IU02 N/A
    433751 5yql:A (1.601) BS01 A2I 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=25.9uM
    BindingDB: IC50=26303nM
    433752 5yql:A (1.601) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526
    433753 5yqm:A (1.735) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526
    433754 5yqm:A (1.735) BS02 A2X 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526
    433755 5yqn:A (1.6) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526
    433756 5yqn:A (1.6) BS02 L55 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=93.7uM
    BindingDB: IC50=93700nM
    433757 5yqo:A (1.483) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526
    433758 5yqo:A (1.483) BS02 L5C 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 29957526 MOAD: ic50=0.815uM
    BindingDB: IC50=813nM
    433759 5yqs:A (2.4) BS01 BGC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433760 5yqs:A (2.4) BS02 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433761 5yqs:A (2.4) BS03 GLC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433762 5yqs:A (2.4) BS04 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433763 5yqs:A (2.4) BS05 BGC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433764 5yqs:A (2.4) BS06 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433765 5yqs:B (2.4) BS01 BGC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433766 5yqs:B (2.4) BS02 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433767 5yqs:B (2.4) BS03 GLC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433768 5yqs:B (2.4) BS04 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433769 5yqs:B (2.4) BS05 BGC 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433770 5yqs:B (2.4) BS06 XYS 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433771 5yqs:B (2.4) BS07 CA 3.2.1.21 GO:0000272 ... Q2U8V9 30445155
    433772 5yqt:D (2.3) BS01 3ZS 3.3.2.8 GO:0016787 ... Q9ZAG3 29232125
    433773 5yqx:A (1.82) BS01 E0K ? N/A O60885 29758518 BindingDB: Kd=110nM, IC50=100nM
    433774 5yqz:R (3.0) BS01 peptide 3.2.1.17 GO:0003796 ... P00720
    P47871
    29300013
    433775 5yr4:A (1.82) BS01 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433776 5yr4:A (1.82) BS02 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433777 5yr4:A (1.82) BS03 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433778 5yr4:A (1.82) BS04 TN4 3.4.11.18 GO:0006508 ... P53582 30837307
    433779 5yr5:A (1.6) BS01 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433780 5yr5:A (1.6) BS02 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433781 5yr5:A (1.6) BS03 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433782 5yr5:A (1.6) BS04 OVA 3.4.11.18 GO:0006508 ... P53582 30837307
    433783 5yr6:A (1.75) BS01 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433784 5yr6:A (1.75) BS02 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    433785 5yr6:A (1.75) BS03 TN4 3.4.11.18 GO:0006508 ... P53582 30837307
    433786 5yr7:A (2.06) BS01 CO 3.4.11.18 GO:0006508 ... P53582 N/A
    433787 5yr7:A (2.06) BS02 CO 3.4.11.18 GO:0006508 ... P53582 N/A
    433788 5yr7:A (2.06) BS03 MET 3.4.11.18 GO:0006508 ... P53582 N/A
    433789 5yrf:A (1.7) BS01 GLC ? GO:0030246 ... B6F0T7 29524263
    433790 5yrf:B (1.7) BS01 GLC ? GO:0030246 ... B6F0T7 29524263
    433791 5yrg:A (1.5) BS01 BGC ? GO:0030246 ... B6F0T7 29524263
    433792 5yrg:A (1.5) BS02 GLC ? GO:0030246 ... B6F0T7 29524263
    433793 5yrg:B (1.5) BS01 BGC ? GO:0030246 ... B6F0T7 29524263
    433794 5yrg:B (1.5) BS02 GLC ? GO:0030246 ... B6F0T7 29524263
    433795 5yri:A (1.65) BS01 GLC ? GO:0030246 ... B6F0T7 29524263
    433796 5yri:B (1.65) BS01 GLC ? GO:0030246 ... A0A2Z5V8U8 29524263
    433797 5yri:B (1.65) BS02 GLC ? GO:0030246 ... A0A2Z5V8U8 29524263
    433798 5yrj:A (1.8) BS01 BGC ? GO:0030246 ... B6F0T7 29524263
    433799 5yrj:A (1.8) BS02 GLC ? GO:0030246 ... B6F0T7 29524263
    433800 5yrj:B (1.8) BS01 BGC ? GO:0030246 ... A0A2Z5V8U8 29524263

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).