SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    434001 5ytk:C (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434002 5ytk:C (2.7) BS02 LEU 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434003 5ytk:C (2.7) BS03 LYS 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434004 5ytk:D (2.7) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434005 5ytk:D (2.7) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434006 5ytk:D (2.7) BS03 LEU 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434007 5ytk:E (2.7) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434008 5ytk:E (2.7) BS02 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434009 5ytk:E (2.7) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434010 5ytk:F (2.7) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434011 5ytk:F (2.7) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434012 5ytk:F (2.7) BS03 LEU 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    434013 5ytl:A (1.401) BS01 CU N/A GO:0005507 ... N/A 30082512
    434014 5ytl:A (1.401) BS02 CU N/A GO:0005507 ... N/A 30082512
    434015 5ytl:A (1.401) BS03 CU N/A GO:0005507 ... N/A 30082512
    434016 5ytm:A (1.5) BS01 CU N/A GO:0005507 ... N/A 30082512
    434017 5ytm:A (1.5) BS02 CU N/A GO:0005507 ... N/A 30082512
    434018 5ytm:A (1.5) BS03 CU N/A GO:0005507 ... N/A 30082512
    434019 5ytn:A (1.75) BS01 CU N/A GO:0005507 ... N/A 30082512
    434020 5ytn:A (1.75) BS02 CU N/A GO:0005507 ... N/A 30082512
    434021 5ytn:A (1.75) BS03 CU N/A GO:0005507 ... N/A 30082512
    434022 5yto:A (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434023 5yto:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434024 5yto:B (1.9) BS02 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    434025 5yto:B (1.9) BS03 PS5 1.15.1.1 GO:0000302 ... P00441 29679384
    434026 5yto:B (1.9) BS04 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    434027 5yto:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434028 5yto:C (1.9) BS02 PS5 1.15.1.1 GO:0000302 ... P00441 29679384
    434029 5yto:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434030 5yto:D (1.9) BS02 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    434031 5yto:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434032 5yto:E (1.9) BS02 PS5 1.15.1.1 GO:0000302 ... P00441 29679384
    434033 5yto:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434034 5yto:G (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434035 5yto:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434036 5yto:H (1.9) BS02 946 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=33uM
    434037 5yto:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434038 5yts:A (1.77) BS01 rna ? GO:0003676 ... P67809 31160337
    434039 5ytt:A (1.6) BS01 rna ? GO:0003676 ... P67809 31160337
    434040 5ytu:A (1.9) BS01 5FW 1.15.1.1 GO:0000302 ... P00441 29679384 MOAD: Kd=12uM
    434041 5ytu:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434042 5ytu:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434043 5ytu:B (1.9) BS02 S4P 1.15.1.1 GO:0000302 ... P00441 29679384
    434044 5ytu:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434045 5ytu:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434046 5ytu:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434047 5ytu:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434048 5ytu:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434049 5ytu:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434050 5ytu:J (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434051 5ytv:A (1.7) BS01 rna ? GO:0003676 ... P67809 31160337
    434052 5ytx:A (1.551) BS01 rna ? GO:0003676 ... P67809 31160337
    434053 5yu0:A (1.92) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434054 5yu0:B (1.92) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434055 5yu0:C (1.92) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434056 5yu0:D (1.92) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434057 5yu1:A (1.923) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434058 5yu1:A (1.923) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434059 5yu1:B (1.923) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434060 5yu1:B (1.923) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434061 5yu1:C (1.923) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434062 5yu1:C (1.923) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434063 5yu1:D (1.923) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434064 5yu1:D (1.923) BS02 YCP 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434065 5yu3:A (1.79) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434066 5yu3:A (1.79) BS02 PRO 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434067 5yu3:B (1.79) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434068 5yu3:B (1.79) BS02 PRO 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434069 5yu3:C (1.79) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434070 5yu3:C (1.79) BS02 PRO 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434071 5yu3:D (1.79) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434072 5yu3:D (1.79) BS02 PRO 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434073 5yu4:A (2.144) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434074 5yu4:A (2.144) BS02 DAB 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434075 5yu4:B (2.144) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434076 5yu4:B (2.144) BS02 DAB 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434077 5yu4:C (2.144) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434078 5yu4:C (2.144) BS02 DAB 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434079 5yu4:D (2.144) BS01 NAD 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434080 5yu4:D (2.144) BS02 DAB 4.3.1.12 GO:0000166 ... D9UBW0 29629557
    434081 5yu6:A (2.997) BS01 peptide ? GO:0000049 ... Q9HAV4 30100359
    434082 5yu6:B (2.997) BS01 GTP 3.6.5.- GO:0000054 ... P62825 30100359
    434083 5yu6:B (2.997) BS02 MG 3.6.5.- GO:0000054 ... P62825 30100359
    434084 5yu6:C (2.997) BS01 peptide ? GO:0000049 ... Q9HAV4 30100359
    434085 5yu6:D (2.997) BS01 GTP 3.6.5.- GO:0000054 ... P62825 30100359
    434086 5yu6:D (2.997) BS02 MG 3.6.5.- GO:0000054 ... P62825 30100359
    434087 5yu8:A (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    434088 5yu8:B (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    434089 5yu8:C (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    434090 5yu8:D (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    434091 5yu8:E (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    434092 5yu9:A (1.95) BS01 1E8 2.7.10.1 GO:0004672 ... P00533 27626175 BindingDB: IC50=0.5nM, Kd=6.9nM
    434093 5yu9:B (1.95) BS01 1E8 2.7.10.1 GO:0004672 ... P00533 27626175 BindingDB: IC50=0.5nM, Kd=6.9nM
    434094 5yu9:C (1.95) BS01 1E8 2.7.10.1 GO:0004672 ... P00533 27626175 BindingDB: IC50=0.5nM, Kd=6.9nM
    434095 5yu9:D (1.95) BS01 1E8 2.7.10.1 GO:0004672 ... P00533 27626175 BindingDB: IC50=0.5nM, Kd=6.9nM
    434096 5yud:A (4.28) BS01 ATP ? GO:0005515 ... Q9R016 29182158
    434097 5yuf:A (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    434098 5yuf:A (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    434099 5yuf:B (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    434100 5yuf:B (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    434101 5yuf:C (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    434102 5yuf:C (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    434103 5yuf:D (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    434104 5yuf:D (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    434105 5yug:A (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    434106 5yug:A (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    434107 5yug:A (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    434108 5yug:B (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    434109 5yug:B (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    434110 5yug:B (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    434111 5yug:E (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    434112 5yug:E (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    434113 5yug:E (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    434114 5yug:G (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    434115 5yug:G (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    434116 5yug:G (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    434117 5yuh:A (1.801) BS01 ZN ? N/A Q8W4L5 N/A
    434118 5yuh:A (1.801) BS02 ZN ? N/A Q8W4L5 N/A
    434119 5yuh:A (1.801) BS03 ZN ? N/A Q8W4L5 N/A
    434120 5yui:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    434121 5yuj:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    434122 5yuk:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    434123 5yul:A (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434124 5yul:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434125 5yul:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434126 5yul:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434127 5yul:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434128 5yul:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434129 5yul:G (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434130 5yul:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434131 5yul:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    434132 5yum:A (2.432) BS01 ILE 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    434133 5yum:A (2.432) BS02 CO 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    434134 5yun:A (2.67) BS01 MYC ? GO:0003697 ... P40947 30213633
    434135 5yun:B (2.67) BS01 MYC ? GO:0003697 ... P40947 30213633
    434136 5yun:D (2.67) BS01 MYC ? GO:0003697 ... P40947 30213633
    434137 5yur:A (2.035) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434138 5yur:A (2.035) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434139 5yur:A (2.035) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434140 5yur:A (2.035) BS04 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434141 5yur:F (2.035) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434142 5yur:F (2.035) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434143 5yur:F (2.035) BS03 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434144 5yus:A (1.94) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434145 5yus:A (1.94) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434146 5yus:A (1.94) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434147 5yus:A (1.94) BS04 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434148 5yus:A (1.94) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434149 5yus:A (1.94) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434150 5yus:F (1.94) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434151 5yus:F (1.94) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434152 5yus:F (1.94) BS03 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434153 5yus:F (1.94) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434154 5yus:F (1.94) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434155 5yut:A (2.15) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434156 5yut:A (2.15) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434157 5yut:A (2.15) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434158 5yut:A (2.15) BS04 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434159 5yut:A (2.15) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434160 5yut:A (2.15) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434161 5yut:F (2.15) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434162 5yut:F (2.15) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434163 5yut:F (2.15) BS03 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434164 5yut:F (2.15) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434165 5yut:F (2.15) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434166 5yuu:A (1.892) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434167 5yuu:A (1.892) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434168 5yuu:A (1.892) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434169 5yuu:A (1.892) BS04 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434170 5yuu:A (1.892) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434171 5yuu:A (1.892) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434172 5yuu:F (1.892) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434173 5yuu:F (1.892) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434174 5yuu:F (1.892) BS03 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434175 5yuu:F (1.892) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434176 5yuu:F (1.892) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434177 5yuv:A (2.06) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434178 5yuv:A (2.06) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434179 5yuv:A (2.06) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434180 5yuv:A (2.06) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434181 5yuv:A (2.06) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434182 5yuv:A (2.06) BS06 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434183 5yuv:F (2.06) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434184 5yuv:F (2.06) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434185 5yuv:F (2.06) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434186 5yuv:F (2.06) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434187 5yuv:F (2.06) BS05 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434188 5yuw:A (2.124) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434189 5yuw:A (2.124) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434190 5yuw:A (2.124) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434191 5yuw:A (2.124) BS04 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434192 5yuw:A (2.124) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434193 5yuw:A (2.124) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434194 5yuw:A (2.124) BS07 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434195 5yuw:F (2.124) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434196 5yuw:F (2.124) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    434197 5yuw:F (2.124) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434198 5yuw:F (2.124) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    434199 5yuw:F (2.124) BS05 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    434200 5yux:A (2.04) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).