SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435001 5z3f:A (1.1) BS01 BGC 3.2.1.205 GO:0000272 ... D2PPM8 34665923
    435002 5z3f:A (1.1) BS02 GOL 3.2.1.205 GO:0000272 ... D2PPM8 34665923
    435003 5z3f:A (1.1) BS03 GOL 3.2.1.205 GO:0000272 ... D2PPM8 34665923
    435004 5z3f:A (1.1) BS04 GOL 3.2.1.205 GO:0000272 ... D2PPM8 34665923
    435005 5z3g:D (3.65) BS01 rna ? GO:0000463 ... P40693 29557065
    435006 5z3g:E (3.65) BS01 rna ? GO:0000463 ... P53927 29557065
    435007 5z3g:F (3.65) BS01 rna ? GO:0000027 ... P14126 29557065
    435008 5z3g:G (3.65) BS01 rna ? GO:0002181 ... P10664 29557065
    435009 5z3g:G (3.65) BS02 rna ? GO:0002181 ... P10664 29557065
    435010 5z3g:H (3.65) BS01 rna ? GO:0000463 ... P38779 29557065
    435011 5z3g:I (3.65) BS01 rna ? GO:0000027 ... Q02326 29557065
    435012 5z3g:J (3.65) BS01 rna ? GO:0000463 ... P05737 29557065
    435013 5z3g:K (3.65) BS01 rna ? GO:0000470 ... P17076 29557065
    435014 5z3g:K (3.65) BS02 rna ? GO:0000470 ... P17076 29557065
    435015 5z3g:L (3.65) BS01 rna ? GO:0002181 ... P05738 29557065
    435016 5z3g:M (3.65) BS01 rna ? GO:0000462 ... P53261 29557065
    435017 5z3g:M (3.65) BS02 rna ? GO:0000462 ... P53261 29557065
    435018 5z3g:N (3.65) BS01 rna ? GO:0000054 ... Q12522 29557065
    435019 5z3g:O (3.65) BS01 rna ? GO:0000055 ... P38805 29557065
    435020 5z3g:P (3.65) BS01 rna ? GO:0002181 ... Q12690 29557065
    435021 5z3g:P (3.65) BS02 rna ? GO:0002181 ... Q12690 29557065
    435022 5z3g:Q (3.65) BS01 rna ? GO:0000027 ... P36105 29557065
    435023 5z3g:R (3.65) BS01 rna ? GO:0002181 ... P05748 29557065
    435024 5z3g:R (3.65) BS02 rna ? GO:0002181 ... P05748 29557065
    435025 5z3g:S (3.65) BS01 rna ? GO:0000470 ... P26784 29557065
    435026 5z3g:T (3.65) BS01 rna ? GO:0000448 ... P05740 29557065
    435027 5z3g:T (3.65) BS02 rna ? GO:0000448 ... P05740 29557065
    435028 5z3g:U (3.65) BS01 rna ? GO:0002181 ... P0CX49 29557065
    435029 5z3g:V (3.65) BS01 rna ? GO:0003674 ... P53136 29557065
    435030 5z3g:W (3.65) BS01 rna ? GO:0002181 ... P0CX23 29557065
    435031 5z3g:X (3.65) BS01 rna ? GO:0003674 ... P35178 29557065
    435032 5z3g:Y (3.65) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 29557065
    435033 5z3g:Z (3.65) BS01 rna ? GO:0000460 ... P10962 29557065
    435034 5z3g:a (3.65) BS01 rna ? GO:0000027 ... Q08235 29557065
    435035 5z3g:c (3.65) BS01 rna ? GO:0002181 ... P05743 29557065
    435036 5z3g:c (3.65) BS02 rna ? GO:0002181 ... P05743 29557065
    435037 5z3g:d (3.65) BS01 rna N/A N/A N/A 29557065
    435038 5z3g:i (3.65) BS01 rna ? GO:0002181 ... P38061 29557065
    435039 5z3g:j (3.65) BS01 rna ? GO:0000027 ... P05744 29557065
    435040 5z3g:l (3.65) BS01 rna ? GO:0000463 ... P0CX84 29557065
    435041 5z3g:l (3.65) BS02 rna ? GO:0000463 ... P0CX84 29557065
    435042 5z3g:m (3.65) BS01 rna ? GO:0002181 ... P05745 29557065
    435043 5z3g:n (3.65) BS01 rna ? GO:0000448 ... P49166 29557065
    435044 5z3g:n (3.65) BS02 rna ? GO:0000448 ... P49166 29557065
    435045 5z3i:A (1.65) BS01 ADE 3.2.2.22 GO:0017148 ... P11140 30521151
    435046 5z3j:A (1.7) BS01 NCA 3.2.2.22 GO:0017148 ... P11140 30521151
    435047 5z3l:A (4.31) BS01 dna ? GO:0000786 ... P84233 30867599
    435048 5z3l:A (4.31) BS02 dna ? GO:0000786 ... P84233 30867599
    435049 5z3l:B (4.31) BS01 dna ? GO:0000786 ... P62799 30867599
    435050 5z3l:B (4.31) BS02 dna ? GO:0000786 ... P62799 30867599
    435051 5z3l:C (4.31) BS01 dna ? GO:0000786 ... P06897 30867599
    435052 5z3l:C (4.31) BS02 dna ? GO:0000786 ... P06897 30867599
    435053 5z3l:D (4.31) BS01 dna ? GO:0000786 ... P02281 30867599
    435054 5z3l:E (4.31) BS01 dna ? GO:0000786 ... P84233 30867599
    435055 5z3l:E (4.31) BS02 dna ? GO:0000786 ... P84233 30867599
    435056 5z3l:F (4.31) BS01 dna ? GO:0000786 ... P62799 30867599
    435057 5z3l:F (4.31) BS02 dna ? GO:0000786 ... P62799 30867599
    435058 5z3l:G (4.31) BS01 dna ? GO:0000786 ... P06897 30867599
    435059 5z3l:G (4.31) BS02 dna ? GO:0000786 ... P06897 30867599
    435060 5z3l:H (4.31) BS01 dna ? GO:0000786 ... P02281 30867599
    435061 5z3l:H (4.31) BS02 dna ? GO:0000786 ... P02281 30867599
    435062 5z3l:O (4.31) BS01 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435063 5z3l:O (4.31) BS02 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435064 5z3n:A (1.91) BS01 dna 2.7.7.7 GO:0001882 ... P19821 30407705
    435065 5z3n:A (1.91) BS02 dna 2.7.7.7 GO:0001882 ... P19821 30407705
    435066 5z3n:A (1.91) BS03 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    435067 5z3n:A (1.91) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    435068 5z3n:A (1.91) BS05 DGT 2.7.7.7 GO:0001882 ... P19821 30407705
    435069 5z3o:A (3.62) BS01 dna ? GO:0000786 ... P84233 30867599
    435070 5z3o:A (3.62) BS02 dna ? GO:0000786 ... P84233 30867599
    435071 5z3o:B (3.62) BS01 dna ? GO:0000786 ... P62799 30867599
    435072 5z3o:B (3.62) BS02 dna ? GO:0000786 ... P62799 30867599
    435073 5z3o:C (3.62) BS01 dna ? GO:0000786 ... P06897 30867599
    435074 5z3o:C (3.62) BS02 dna ? GO:0000786 ... P06897 30867599
    435075 5z3o:D (3.62) BS01 dna ? GO:0000786 ... P02281 30867599
    435076 5z3o:D (3.62) BS02 dna ? GO:0000786 ... P02281 30867599
    435077 5z3o:E (3.62) BS01 dna ? GO:0000786 ... P84233 30867599
    435078 5z3o:E (3.62) BS02 dna ? GO:0000786 ... P84233 30867599
    435079 5z3o:F (3.62) BS01 dna ? GO:0000786 ... P62799 30867599
    435080 5z3o:F (3.62) BS02 dna ? GO:0000786 ... P62799 30867599
    435081 5z3o:G (3.62) BS01 dna ? GO:0000786 ... P06897 30867599
    435082 5z3o:G (3.62) BS02 dna ? GO:0000786 ... P06897 30867599
    435083 5z3o:H (3.62) BS01 dna ? GO:0000786 ... P02281 30867599
    435084 5z3o:H (3.62) BS02 dna ? GO:0000786 ... P02281 30867599
    435085 5z3o:O (3.62) BS01 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435086 5z3o:O (3.62) BS02 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435087 5z3o:O (3.62) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    435088 5z3o:O (3.62) BS04 MG 3.6.4.- GO:0005524 ... P22082 30867599
    435089 5z3q:A (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 30231078
    435090 5z3q:B (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 30231078
    435091 5z3q:C (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 30231078
    435092 5z3q:D (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 30231078
    435093 5z3q:E (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... P03300 30231078
    435094 5z3s:A (1.65) BS01 1BO ? GO:0005576 ... Q7YS85 29524427
    435095 5z3u:A (4.31) BS01 dna ? GO:0000786 ... P84233 30867599
    435096 5z3u:A (4.31) BS02 dna ? GO:0000786 ... P84233 30867599
    435097 5z3u:B (4.31) BS01 dna ? GO:0000786 ... P62799 30867599
    435098 5z3u:B (4.31) BS02 dna ? GO:0000786 ... P62799 30867599
    435099 5z3u:C (4.31) BS01 dna ? GO:0000786 ... Q6AZJ8 30867599
    435100 5z3u:C (4.31) BS02 dna ? GO:0000786 ... Q6AZJ8 30867599
    435101 5z3u:D (4.31) BS01 dna ? GO:0000786 ... P02281 30867599
    435102 5z3u:D (4.31) BS02 dna ? GO:0000786 ... P02281 30867599
    435103 5z3u:E (4.31) BS01 dna ? GO:0000786 ... P84233 30867599
    435104 5z3u:E (4.31) BS02 dna ? GO:0000786 ... P84233 30867599
    435105 5z3u:F (4.31) BS01 dna ? GO:0000786 ... P62799 30867599
    435106 5z3u:F (4.31) BS02 dna ? GO:0000786 ... P62799 30867599
    435107 5z3u:G (4.31) BS01 dna ? GO:0000786 ... Q6AZJ8 30867599
    435108 5z3u:G (4.31) BS02 dna ? GO:0000786 ... Q6AZJ8 30867599
    435109 5z3u:H (4.31) BS01 dna ? GO:0000786 ... P02281 30867599
    435110 5z3u:H (4.31) BS02 dna ? GO:0000786 ... P02281 30867599
    435111 5z3u:O (4.31) BS01 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435112 5z3u:O (4.31) BS02 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435113 5z3u:O (4.31) BS03 MG 3.6.4.- GO:0005524 ... P22082 30867599
    435114 5z3u:O (4.31) BS04 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    435115 5z3u:O (4.31) BS05 BEF 3.6.4.- GO:0005524 ... P22082 30867599
    435116 5z3v:A (4.22) BS01 dna ? GO:0000786 ... P84233 30867599
    435117 5z3v:A (4.22) BS02 dna ? GO:0000786 ... P84233 30867599
    435118 5z3v:B (4.22) BS01 dna ? GO:0000786 ... P62799 30867599
    435119 5z3v:B (4.22) BS02 dna ? GO:0000786 ... P62799 30867599
    435120 5z3v:C (4.22) BS01 dna ? GO:0000786 ... Q6AZJ8 30867599
    435121 5z3v:C (4.22) BS02 dna ? GO:0000786 ... Q6AZJ8 30867599
    435122 5z3v:D (4.22) BS01 dna ? GO:0000786 ... P02281 30867599
    435123 5z3v:D (4.22) BS02 dna ? GO:0000786 ... P02281 30867599
    435124 5z3v:E (4.22) BS01 dna ? GO:0000786 ... P84233 30867599
    435125 5z3v:E (4.22) BS02 dna ? GO:0000786 ... P84233 30867599
    435126 5z3v:F (4.22) BS01 dna ? GO:0000786 ... P62799 30867599
    435127 5z3v:F (4.22) BS02 dna ? GO:0000786 ... P62799 30867599
    435128 5z3v:G (4.22) BS01 dna ? GO:0000786 ... Q6AZJ8 30867599
    435129 5z3v:G (4.22) BS02 dna ? GO:0000786 ... Q6AZJ8 30867599
    435130 5z3v:H (4.22) BS01 dna ? GO:0000786 ... P02281 30867599
    435131 5z3v:H (4.22) BS02 dna ? GO:0000786 ... P02281 30867599
    435132 5z3v:O (4.22) BS01 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435133 5z3v:O (4.22) BS02 dna 3.6.4.- GO:0005524 ... P22082 30867599
    435134 5z3v:O (4.22) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    435135 5z3v:O (4.22) BS04 BEF 3.6.4.- GO:0005524 ... P22082 30867599
    435136 5z41:A (1.7) BS01 ZN ? GO:0005524 ... O67518 29645090
    435137 5z41:A (1.7) BS02 MG ? GO:0005524 ... O67518 29645090
    435138 5z42:A (1.3) BS01 ZN ? GO:0005524 ... O67518 29645090
    435139 5z42:A (1.3) BS02 ZN ? GO:0005524 ... O67518 29645090
    435140 5z42:A (1.3) BS03 ZN ? GO:0005524 ... O67518 29645090
    435141 5z43:A (2.361) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    435142 5z43:B (2.361) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    435143 5z44:A (2.458) BS01 GST ? GO:0004659 ... V5TDZ4 29677386
    435144 5z44:A (2.458) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    435145 5z44:B (2.458) BS01 GST ? GO:0004659 ... V5TDZ4 29677386
    435146 5z44:B (2.458) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    435147 5z45:A (2.601) BS01 GST ? GO:0004659 ... V5TDZ4 29677386
    435148 5z45:A (2.601) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    435149 5z45:B (2.601) BS01 GST ? GO:0004659 ... V5TDZ4 29677386
    435150 5z45:B (2.601) BS02 8XL ? GO:0004659 ... V5TDZ4 29677386
    435151 5z45:B (2.601) BS03 MG ? GO:0004659 ... V5TDZ4 29677386
    435152 5z46:A (1.999) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    435153 5z46:A (1.999) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    435154 5z46:B (1.999) BS01 GST ? GO:0004659 ... V5TDZ4 29677386
    435155 5z46:B (1.999) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    435156 5z46:B (1.999) BS03 MG ? GO:0004659 ... V5TDZ4 29677386
    435157 5z46:B (1.999) BS04 8XL ? GO:0004659 ... V5TDZ4 29677386
    435158 5z48:A (1.551) BS01 PCA 3.4.19.3 GO:0005737 ... Q9RX25 30950401
    435159 5z48:B (1.551) BS01 PCA 3.4.19.3 GO:0005737 ... Q9RX25 30950401
    435160 5z49:A (2.148) BS01 RUB ? N/A Q9F1R2 30084400
    435161 5z49:B (2.148) BS01 RUB ? N/A Q9F1R2 30084400
    435162 5z4a:A (1.637) BS01 rna 2.7.7.52 N/A Q9VI58 30407553
    435163 5z4d:A (1.803) BS01 rna 2.7.7.52 N/A Q9VI58 30407553
    435164 5z4f:A (-1.00) BS01 96F ? N/A A0A0K1H313 30151879
    435165 5z4g:A (1.5) BS01 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    435166 5z4g:A (1.5) BS02 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    435167 5z4g:B (1.5) BS01 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    435168 5z4g:B (1.5) BS02 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    435169 5z4h:A (2.0) BS01 A8K 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435170 5z4h:A (2.0) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435171 5z4h:B (2.0) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435172 5z4h:B (2.0) BS02 A8K 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435173 5z4j:A (1.82) BS01 rna 2.7.7.52 N/A Q9VI58 30407553
    435174 5z4m:A (1.74) BS01 UTP 2.7.7.52 N/A Q9VI58 30407553
    435175 5z4m:A (1.74) BS02 UTP 2.7.7.52 N/A Q9VI58 30407553
    435176 5z4m:A (1.74) BS03 MG 2.7.7.52 N/A Q9VI58 30407553
    435177 5z4o:A (1.73) BS01 HX8 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435178 5z4o:A (1.73) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435179 5z4o:B (1.73) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435180 5z4o:B (1.73) BS02 HX8 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435181 5z4p:A (2.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 N/A
    435182 5z4p:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    435183 5z4p:B (2.5) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    435184 5z4p:B (2.5) BS02 MG ? GO:0000226 ... Q6B856 N/A
    435185 5z4p:B (2.5) BS03 CA ? GO:0000226 ... Q6B856 N/A
    435186 5z4p:B (2.5) BS04 97O ? GO:0000226 ... Q6B856 N/A
    435187 5z4p:C (2.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 N/A
    435188 5z4p:D (2.5) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    435189 5z4p:F (2.5) BS01 ACP N/A GO:0036211 ... N/A N/A
    435190 5z4t:A (1.68) BS01 BMA ? N/A K0J0N5 29871927
    435191 5z4t:A (1.68) BS02 BMA ? N/A K0J0N5 29871927
    435192 5z4t:B (1.68) BS01 BMA ? N/A K0J0N5 29871927
    435193 5z4t:B (1.68) BS02 BMA ? N/A K0J0N5 29871927
    435194 5z4u:A (3.18) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    435195 5z4u:A (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    435196 5z4u:B (3.18) BS01 GDP ? GO:0000226 ... Q6B856 N/A
    435197 5z4u:B (3.18) BS02 96C ? GO:0000226 ... Q6B856 N/A
    435198 5z4u:C (3.18) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    435199 5z4u:C (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    435200 5z4u:D (3.18) BS01 GTP ? GO:0000226 ... Q6B856 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).