SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435201 5z4u:D (3.18) BS02 96C ? GO:0000226 ... Q6B856 N/A
    435202 5z4u:F (3.18) BS01 ACP N/A GO:0036211 ... N/A N/A
    435203 5z4w:A (1.79) BS01 EOH ? GO:0005576 ... Q7YS85 29524427
    435204 5z53:A (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    435205 5z53:A (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    435206 5z53:A (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    435207 5z53:B (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    435208 5z53:B (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    435209 5z53:B (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    435210 5z53:C (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    435211 5z53:C (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    435212 5z53:C (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    435213 5z53:D (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    435214 5z53:D (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    435215 5z53:D (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    435216 5z54:A (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    435217 5z54:A (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    435218 5z54:A (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    435219 5z54:B (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    435220 5z54:B (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    435221 5z54:B (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    435222 5z54:C (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    435223 5z54:C (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    435224 5z54:C (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    435225 5z54:D (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    435226 5z54:D (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    435227 5z54:D (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    435228 5z56:1 (5.1) BS01 rna ? GO:0000245 ... O75533 29360106
    435229 5z56:1 (5.1) BS02 rna ? GO:0000245 ... O75533 29360106
    435230 5z56:2 (5.1) BS01 rna ? GO:0000398 ... Q13435 29360106
    435231 5z56:2 (5.1) BS02 rna ? GO:0000398 ... Q13435 29360106
    435232 5z56:6 (5.1) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    435233 5z56:6 (5.1) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    435234 5z56:6 (5.1) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    435235 5z56:A (5.1) BS01 rna ? GO:0000244 ... Q6P2Q9 29360106
    435236 5z56:A (5.1) BS02 rna ? GO:0000244 ... Q6P2Q9 29360106
    435237 5z56:A (5.1) BS03 rna ? GO:0000244 ... Q6P2Q9 29360106
    435238 5z56:A (5.1) BS04 rna ? GO:0000244 ... Q6P2Q9 29360106
    435239 5z56:A (5.1) BS05 peptide ? GO:0000244 ... Q6P2Q9 29360106
    435240 5z56:A (5.1) BS06 IHP ? GO:0000244 ... Q6P2Q9 29360106
    435241 5z56:C (5.1) BS01 GTP ? GO:0000398 ... Q15029 29360106
    435242 5z56:J (5.1) BS01 rna ? GO:0000245 ... Q9BZJ0 29360106
    435243 5z56:L (5.1) BS01 rna ? GO:0000077 ... Q99459 29360106
    435244 5z56:L (5.1) BS02 rna ? GO:0000077 ... Q99459 29360106
    435245 5z56:L (5.1) BS03 rna ? GO:0000077 ... Q99459 29360106
    435246 5z56:M (5.1) BS01 rna 2.3.2.27 GO:0000398 ... O15541 29360106
    435247 5z56:M (5.1) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29360106
    435248 5z56:N (5.1) BS01 rna ? GO:0000398 ... P41223 29360106
    435249 5z56:N (5.1) BS02 ZN ? GO:0000398 ... P41223 29360106
    435250 5z56:N (5.1) BS03 ZN ? GO:0000398 ... P41223 29360106
    435251 5z56:N (5.1) BS04 ZN ? GO:0000398 ... P41223 29360106
    435252 5z56:O (5.1) BS01 rna ? GO:0000398 ... Q9NW64 29360106
    435253 5z56:O (5.1) BS02 rna ? GO:0000398 ... Q9NW64 29360106
    435254 5z56:O (5.1) BS03 ZN ? GO:0000398 ... Q9NW64 29360106
    435255 5z56:O (5.1) BS04 ZN ? GO:0000398 ... Q9NW64 29360106
    435256 5z56:O (5.1) BS05 ZN ? GO:0000398 ... Q9NW64 29360106
    435257 5z56:P (5.1) BS01 rna ? GO:0000398 ... Q9P013 29360106
    435258 5z56:T (5.1) BS01 rna ? GO:0000398 ... O43660 29360106
    435259 5z56:a (5.1) BS01 rna ? GO:0000243 ... P62318 29360106
    435260 5z56:b (5.1) BS01 rna ? GO:0000387 ... P14678 29360106
    435261 5z56:c (5.1) BS01 rna ? GO:0000243 ... P62314 29360106
    435262 5z56:d (5.1) BS01 rna ? GO:0000245 ... P62316 29360106
    435263 5z56:e (5.1) BS01 rna ? GO:0000245 ... P62304 29360106
    435264 5z56:g (5.1) BS01 rna ? GO:0000245 ... P62308 29360106
    435265 5z56:h (5.1) BS01 rna ? GO:0000243 ... P62318 29360106
    435266 5z56:i (5.1) BS01 rna ? GO:0000387 ... P14678 29360106
    435267 5z56:j (5.1) BS01 rna ? GO:0000243 ... P62314 29360106
    435268 5z56:k (5.1) BS01 rna ? GO:0000245 ... P62316 29360106
    435269 5z56:l (5.1) BS01 rna ? GO:0000245 ... P62304 29360106
    435270 5z56:m (5.1) BS01 rna ? GO:0000387 ... P62306 29360106
    435271 5z56:n (5.1) BS01 rna ? GO:0000245 ... P62308 29360106
    435272 5z56:p (5.1) BS01 rna ? GO:0000398 ... P08579 29360106
    435273 5z56:v (5.1) BS01 rna ? GO:0000245 ... Q15428 29360106
    435274 5z56:v (5.1) BS02 ZN ? GO:0000245 ... Q15428 29360106
    435275 5z56:w (5.1) BS01 rna ? GO:0000375 ... Q12874 29360106
    435276 5z56:w (5.1) BS02 rna ? GO:0000375 ... Q12874 29360106
    435277 5z57:1 (6.5) BS01 rna ? GO:0000245 ... O75533 29360106
    435278 5z57:1 (6.5) BS02 rna ? GO:0000245 ... O75533 29360106
    435279 5z57:2 (6.5) BS01 rna ? GO:0000398 ... Q13435 29360106
    435280 5z57:2 (6.5) BS02 rna ? GO:0000398 ... Q13435 29360106
    435281 5z57:6 (6.5) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    435282 5z57:6 (6.5) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    435283 5z57:6 (6.5) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    435284 5z57:A (6.5) BS01 rna ? GO:0000244 ... Q6P2Q9 29360106
    435285 5z57:A (6.5) BS02 rna ? GO:0000244 ... Q6P2Q9 29360106
    435286 5z57:A (6.5) BS03 rna ? GO:0000244 ... Q6P2Q9 29360106
    435287 5z57:A (6.5) BS04 rna ? GO:0000244 ... Q6P2Q9 29360106
    435288 5z57:A (6.5) BS05 peptide ? GO:0000244 ... Q6P2Q9 29360106
    435289 5z57:A (6.5) BS06 IHP ? GO:0000244 ... Q6P2Q9 29360106
    435290 5z57:A (6.5) BS07 ALA ? GO:0000244 ... Q6P2Q9 29360106
    435291 5z57:C (6.5) BS01 GTP ? GO:0000398 ... Q15029 29360106
    435292 5z57:J (6.5) BS01 rna ? GO:0000245 ... Q9BZJ0 29360106
    435293 5z57:L (6.5) BS01 rna ? GO:0000077 ... Q99459 29360106
    435294 5z57:L (6.5) BS02 rna ? GO:0000077 ... Q99459 29360106
    435295 5z57:L (6.5) BS03 rna ? GO:0000077 ... Q99459 29360106
    435296 5z57:N (6.5) BS01 rna ? GO:0000398 ... P41223 29360106
    435297 5z57:N (6.5) BS02 ZN ? GO:0000398 ... P41223 29360106
    435298 5z57:N (6.5) BS03 ZN ? GO:0000398 ... P41223 29360106
    435299 5z57:N (6.5) BS04 ZN ? GO:0000398 ... P41223 29360106
    435300 5z57:O (6.5) BS01 rna ? GO:0000398 ... Q9NW64 29360106
    435301 5z57:O (6.5) BS02 rna ? GO:0000398 ... Q9NW64 29360106
    435302 5z57:O (6.5) BS03 ZN ? GO:0000398 ... Q9NW64 29360106
    435303 5z57:O (6.5) BS04 ZN ? GO:0000398 ... Q9NW64 29360106
    435304 5z57:O (6.5) BS05 ZN ? GO:0000398 ... Q9NW64 29360106
    435305 5z57:P (6.5) BS01 rna ? GO:0000398 ... Q9P013 29360106
    435306 5z57:T (6.5) BS01 rna ? GO:0000398 ... O43660 29360106
    435307 5z57:a (6.5) BS01 rna ? GO:0000243 ... P62318 29360106
    435308 5z57:b (6.5) BS01 rna ? GO:0000387 ... P14678 29360106
    435309 5z57:c (6.5) BS01 rna ? GO:0000243 ... P62314 29360106
    435310 5z57:d (6.5) BS01 rna ? GO:0000245 ... P62316 29360106
    435311 5z57:e (6.5) BS01 rna ? GO:0000245 ... P62304 29360106
    435312 5z57:g (6.5) BS01 rna ? GO:0000245 ... P62308 29360106
    435313 5z57:h (6.5) BS01 rna ? GO:0000243 ... P62318 29360106
    435314 5z57:i (6.5) BS01 rna ? GO:0000387 ... P14678 29360106
    435315 5z57:j (6.5) BS01 rna ? GO:0000243 ... P62314 29360106
    435316 5z57:k (6.5) BS01 rna ? GO:0000245 ... P62316 29360106
    435317 5z57:l (6.5) BS01 rna ? GO:0000245 ... P62304 29360106
    435318 5z57:m (6.5) BS01 rna ? GO:0000387 ... P62306 29360106
    435319 5z57:n (6.5) BS01 rna ? GO:0000245 ... P62308 29360106
    435320 5z57:p (6.5) BS01 rna ? GO:0000398 ... P08579 29360106
    435321 5z57:v (6.5) BS01 rna ? GO:0000245 ... Q15428 29360106
    435322 5z57:v (6.5) BS02 ZN ? GO:0000245 ... Q15428 29360106
    435323 5z57:w (6.5) BS01 rna ? GO:0000375 ... Q12874 29360106
    435324 5z57:w (6.5) BS02 rna ? GO:0000375 ... Q12874 29360106
    435325 5z58:1 (4.9) BS01 rna ? GO:0000245 ... O75533 29360106
    435326 5z58:1 (4.9) BS02 rna ? GO:0000245 ... O75533 29360106
    435327 5z58:2 (4.9) BS01 rna ? GO:0000398 ... Q13435 29360106
    435328 5z58:2 (4.9) BS02 rna ? GO:0000398 ... Q13435 29360106
    435329 5z58:6 (4.9) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    435330 5z58:6 (4.9) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    435331 5z58:6 (4.9) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    435332 5z58:A (4.9) BS01 rna ? GO:0000244 ... Q6P2Q9 29360106
    435333 5z58:A (4.9) BS02 rna ? GO:0000244 ... Q6P2Q9 29360106
    435334 5z58:A (4.9) BS03 rna ? GO:0000244 ... Q6P2Q9 29360106
    435335 5z58:A (4.9) BS04 rna ? GO:0000244 ... Q6P2Q9 29360106
    435336 5z58:A (4.9) BS05 IHP ? GO:0000244 ... Q6P2Q9 29360106
    435337 5z58:C (4.9) BS01 GTP ? GO:0000398 ... Q15029 29360106
    435338 5z58:J (4.9) BS01 rna ? GO:0000245 ... Q9BZJ0 29360106
    435339 5z58:L (4.9) BS01 rna ? GO:0000077 ... Q99459 29360106
    435340 5z58:L (4.9) BS02 rna ? GO:0000077 ... Q99459 29360106
    435341 5z58:L (4.9) BS03 rna ? GO:0000077 ... Q99459 29360106
    435342 5z58:M (4.9) BS01 rna 2.3.2.27 GO:0000398 ... O15541 29360106
    435343 5z58:M (4.9) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29360106
    435344 5z58:T (4.9) BS01 rna ? GO:0000398 ... O43660 29360106
    435345 5z58:T (4.9) BS02 rna ? GO:0000398 ... O43660 29360106
    435346 5z58:a (4.9) BS01 rna ? GO:0000243 ... P62318 29360106
    435347 5z58:b (4.9) BS01 rna ? GO:0000387 ... P14678 29360106
    435348 5z58:c (4.9) BS01 rna ? GO:0000243 ... P62314 29360106
    435349 5z58:d (4.9) BS01 rna ? GO:0000245 ... P62316 29360106
    435350 5z58:e (4.9) BS01 rna ? GO:0000245 ... P62304 29360106
    435351 5z58:g (4.9) BS01 rna ? GO:0000245 ... P62308 29360106
    435352 5z58:h (4.9) BS01 rna ? GO:0000243 ... P62318 29360106
    435353 5z58:i (4.9) BS01 rna ? GO:0000387 ... P14678 29360106
    435354 5z58:j (4.9) BS01 rna ? GO:0000243 ... P62314 29360106
    435355 5z58:k (4.9) BS01 rna ? GO:0000245 ... P62316 29360106
    435356 5z58:l (4.9) BS01 rna ? GO:0000245 ... P62304 29360106
    435357 5z58:m (4.9) BS01 rna ? GO:0000387 ... P62306 29360106
    435358 5z58:n (4.9) BS01 rna ? GO:0000245 ... P62308 29360106
    435359 5z58:p (4.9) BS01 rna ? GO:0000398 ... P08579 29360106
    435360 5z58:w (4.9) BS01 rna ? GO:0000375 ... Q12874 29360106
    435361 5z58:w (4.9) BS02 rna ? GO:0000375 ... Q12874 29360106
    435362 5z5a:A (1.8) BS01 VN3 3.1.3.48 GO:0004721 ... Q8X270 29791483
    435363 5z5a:B (1.8) BS01 VN3 3.1.3.48 GO:0004721 ... Q8X270 29791483
    435364 5z5a:C (1.8) BS01 VN3 3.1.3.48 GO:0004721 ... Q8X270 29791483
    435365 5z5c:A (2.07) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    435366 5z5c:B (2.07) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    435367 5z5c:C (2.07) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    435368 5z5c:D (2.07) BS01 PLP 2.5.1.47 GO:0004124 ... Q8REP3 29343611
    435369 5z5d:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435370 5z5f:A (2.1) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435371 5z5f:A (2.1) BS02 FUB 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435372 5z5h:A (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435373 5z5h:A (1.9) BS02 XYS 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435374 5z5i:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435375 5z5i:A (1.7) BS02 FUB 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435376 5z5i:A (1.7) BS03 XYS 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435377 5z5i:A (1.7) BS04 XYP 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    435378 5z5l:A (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    435379 5z5l:A (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    435380 5z5l:B (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    435381 5z5l:B (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    435382 5z5l:B (2.3) BS03 96O ? GO:0030246 ... P02866 N/A
    435383 5z5l:C (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    435384 5z5l:C (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    435385 5z5l:D (2.3) BS01 CA ? GO:0030246 ... P02866 N/A
    435386 5z5n:A (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    435387 5z5n:A (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    435388 5z5n:B (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    435389 5z5n:B (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    435390 5z5n:B (2.04) BS03 MAN ? GO:0030246 ... P02866 N/A
    435391 5z5n:C (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    435392 5z5n:C (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    435393 5z5n:D (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    435394 5z5n:D (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    435395 5z5p:A (1.4) BS01 MN ? GO:0030246 ... P02866 N/A
    435396 5z5p:A (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    435397 5z5p:A (1.4) BS03 R3M ? GO:0030246 ... P02866 N/A
    435398 5z5p:B (1.4) BS01 R3M ? GO:0030246 ... P02866 N/A
    435399 5z5p:B (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    435400 5z5p:B (1.4) BS03 MN ? GO:0030246 ... P02866 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).