SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435401 5z5s:A (1.8) BS01 peptide ? GO:0003677 ... P37231 30241907
    435402 5z5s:A (1.8) BS02 RTE ? GO:0003677 ... P37231 30241907 BindingDB: EC50=68nM
    435403 5z5t:A (1.991) BS01 96R ? N/A O60885 30385738
    435404 5z5u:A (1.631) BS01 96U ? N/A O60885 30385738
    435405 5z5v:A (1.66) BS01 96X ? N/A O60885 30385738 MOAD: ic50=287nM
    435406 5z5y:A (1.89) BS01 2KO ? GO:0030246 ... P02866 N/A
    435407 5z5y:A (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    435408 5z5y:A (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    435409 5z5y:B (1.89) BS01 2KO ? GO:0030246 ... P02866 N/A
    435410 5z5y:B (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    435411 5z5y:B (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    435412 5z62:A (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00395 30030519
    435413 5z62:A (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00395 30030519
    435414 5z62:A (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00395 30030519
    435415 5z62:A (3.6) BS04 HEA 7.1.1.9 GO:0001666 ... P00395 30030519
    435416 5z62:B (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00403 30030519
    435417 5z62:B (3.6) BS02 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    435418 5z62:B (3.6) BS03 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    435419 5z65:A (2.65) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 29802920
    435420 5z66:A (1.8) BS01 VDM N/A GO:0004555 ... N/A 30657252
    435421 5z68:A (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496
    435422 5z68:A (3.0) BS02 ATP ? GO:0000731 ... Q8RDL3 29391496
    435423 5z68:B (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496
    435424 5z68:B (3.0) BS02 ATP ? GO:0000731 ... Q8RDL3 29391496
    435425 5z68:B (3.0) BS03 MG ? GO:0000731 ... Q8RDL3 29391496
    435426 5z68:C (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496
    435427 5z68:D (3.0) BS01 ATP ? GO:0000731 ... Q8RDL3 29391496
    435428 5z68:D (3.0) BS02 ATP ? GO:0000731 ... Q8RDL3 29391496
    435429 5z69:A (2.102) BS01 AGS ? GO:0000731 ... Q8RDL3 29391496 MOAD: Kd=32uM
    435430 5z6b:A (1.582) BS01 RAM ? N/A O31518 N/A
    435431 5z6b:A (1.582) BS02 GAD ? N/A O31518 N/A
    435432 5z6b:A (1.582) BS03 GAL ? N/A O31518 N/A
    435433 5z6e:A (1.864) BS01 CA ? GO:0016020 ... Q7RY31 30216631
    435434 5z6f:A (1.801) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    435435 5z6j:A (1.803) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    435436 5z6k:A (1.802) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    435437 5z6l:A (1.9) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    435438 5z6m:A (2.202) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 30198899
    435439 5z6o:A (1.7) BS01 CA 3.4.21.64 GO:0004252 ... A0A2R2JFW8 9184139
    435440 5z6r:A (3.0) BS01 ATP 5.6.1.1 GO:0005524 ... Q9UBP0 N/A
    435441 5z6s:A (1.8) BS01 peptide ? GO:0003677 ... P37231 30220602
    435442 5z6s:A (1.8) BS02 RTF ? GO:0003677 ... P37231 30220602 BindingDB: EC50=41nM
    435443 5z6t:A (2.0) BS01 NAP 1.1.1.307 GO:0003729 ... P31867 30487522
    435444 5z6t:B (2.0) BS01 NAP 1.1.1.307 GO:0003729 ... P31867 30487522
    435445 5z6w:A (3.2) BS01 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    435446 5z6w:A (3.2) BS02 dna 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    435447 5z6w:A (3.2) BS03 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    435448 5z6w:A (3.2) BS04 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    435449 5z6z:A (2.301) BS01 dna ? GO:0003677 ... Q9UBX2 30322619
    435450 5z6z:A (2.301) BS02 dna ? GO:0003677 ... Q9UBX2 30322619
    435451 5z74:A (1.95) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YYM9 29578606
    435452 5z74:A (1.95) BS02 FRU 3.2.1.26 GO:0004564 ... Q8YYM9 29578606
    435453 5z74:B (1.95) BS01 GLC 3.2.1.26 GO:0004564 ... Q8YYM9 29578606
    435454 5z74:B (1.95) BS02 FRU 3.2.1.26 GO:0004564 ... Q8YYM9 29578606
    435455 5z75:A (2.1) BS01 NAD N/A N/A N/A 29787243 MOAD: Kd=37.5uM
    435456 5z75:B (2.1) BS01 NAD N/A N/A N/A 29787243 MOAD: Kd=37.5uM
    435457 5z75:D (2.1) BS01 NAD N/A N/A N/A 29787243 MOAD: Kd=37.5uM
    435458 5z79:A (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435459 5z79:A (2.9) BS02 APC 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435460 5z79:A (2.9) BS03 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435461 5z79:A (2.9) BS04 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435462 5z79:B (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435463 5z79:B (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435464 5z79:C (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435465 5z79:C (2.9) BS02 APC 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435466 5z79:C (2.9) BS03 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435467 5z79:C (2.9) BS04 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435468 5z79:D (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435469 5z79:D (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435470 5z79:D (2.9) BS03 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435471 5z79:E (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435472 5z79:E (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435473 5z79:E (2.9) BS03 PE0 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435474 5z79:F (2.9) BS01 HH2 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435475 5z79:F (2.9) BS02 PAB 2.7.6.3 GO:0003848 ... A5JZS1 30104413
    435476 5z7b:A (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    435477 5z7b:B (2.1) BS01 VNL ? N/A Q8NN31 30095229 MOAD: Kd=13uM
    435478 5z7d:A (4.5) BS01 dna ? GO:0002218 ... P0DOV2 33619523
    435479 5z7d:B (4.5) BS01 dna ? GO:0002218 ... P0DOV2 33619523
    435480 5z7d:B (4.5) BS02 dna ? GO:0002218 ... P0DOV2 33619523
    435481 5z7d:C (4.5) BS01 dna ? GO:0002218 ... P0DOV2 33619523
    435482 5z7d:C (4.5) BS02 dna ? GO:0002218 ... P0DOV2 33619523
    435483 5z7e:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 N/A
    435484 5z7f:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 N/A
    435485 5z7f:A (1.9) BS02 NO2 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 N/A
    435486 5z7i:A (1.601) BS01 dna ? N/A A0A0H3C9J4 29514271
    435487 5z7i:A (1.601) BS02 dna ? N/A A0A0H3C9J4 29514271
    435488 5z7i:C (1.601) BS01 dna ? N/A A0A0H3C9J4 29514271
    435489 5z7i:C (1.601) BS02 dna ? N/A A0A0H3C9J4 29514271
    435490 5z7j:A (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435491 5z7j:B (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435492 5z7j:C (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435493 5z7j:D (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435494 5z7j:E (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435495 5z7j:F (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435496 5z7j:G (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435497 5z7j:H (1.98) BS01 36J ? N/A A0A0D2ILK1 N/A
    435498 5z7w:A (1.657) BS01 MG ? GO:0046872 ... A0A0M4AV81 30258184
    435499 5z7w:B (1.657) BS01 MG ? GO:0046872 ... A0A0M4AV81 30258184
    435500 5z7x:A (2.055) BS01 MG ? N/A A0A0M4AMQ0 30258184
    435501 5z7y:A (1.9) BS01 MG ? GO:0046872 ... A0A0M3PNA2 30258184
    435502 5z83:A (1.7) BS01 PLP ? GO:0008483 ... Q70KD9 30643280
    435503 5z83:A (1.7) BS02 PLP ? GO:0008483 ... Q70KD9 30643280
    435504 5z83:B (1.7) BS01 PLP ? GO:0008483 ... Q70KD9 30643280
    435505 5z83:B (1.7) BS02 PLP ? GO:0008483 ... Q70KD9 30643280
    435506 5z84:A (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435507 5z84:A (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435508 5z84:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435509 5z84:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435510 5z84:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435511 5z84:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435512 5z84:B (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435513 5z84:B (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435514 5z84:C (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435515 5z84:C (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435516 5z84:C (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435517 5z84:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435518 5z84:J (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435519 5z84:J (1.85) BS02 DMU ? GO:0006123 ... P07470 30077971
    435520 5z84:L (1.85) BS01 DMU ? GO:0006123 ... P00430 30077971
    435521 5z84:M (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435522 5z84:N (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435523 5z84:N (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435524 5z84:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435525 5z84:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435526 5z84:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435527 5z84:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435528 5z84:O (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435529 5z84:O (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435530 5z84:P (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435531 5z84:P (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435532 5z84:P (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435533 5z84:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435534 5z84:W (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435535 5z84:Z (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435536 5z85:A (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435537 5z85:A (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435538 5z85:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435539 5z85:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435540 5z85:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435541 5z85:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435542 5z85:B (1.85) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435543 5z85:C (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435544 5z85:C (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435545 5z85:C (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435546 5z85:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435547 5z85:J (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435548 5z85:J (1.85) BS02 DMU ? GO:0006123 ... P07470 30077971
    435549 5z85:M (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435550 5z85:N (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435551 5z85:N (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435552 5z85:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435553 5z85:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435554 5z85:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435555 5z85:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435556 5z85:O (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435557 5z85:O (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435558 5z85:P (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435559 5z85:P (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435560 5z85:P (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435561 5z85:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435562 5z85:W (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435563 5z85:Z (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435564 5z86:A (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435565 5z86:A (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435566 5z86:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435567 5z86:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435568 5z86:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435569 5z86:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435570 5z86:B (1.85) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435571 5z86:C (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435572 5z86:C (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435573 5z86:C (1.85) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435574 5z86:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435575 5z86:J (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435576 5z86:J (1.85) BS02 DMU ? GO:0006123 ... P07470 30077971
    435577 5z86:M (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435578 5z86:N (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435579 5z86:N (1.85) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435580 5z86:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435581 5z86:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435582 5z86:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435583 5z86:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435584 5z86:O (1.85) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435585 5z86:O (1.85) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435586 5z86:P (1.85) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435587 5z86:P (1.85) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435588 5z86:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    435589 5z86:W (1.85) BS01 DMU ? GO:0006123 ... P07470 30077971
    435590 5z86:Z (1.85) BS01 DMU ? GO:0006123 ... P10175 30077971
    435591 5z87:A (2.3) BS01 MG ? GO:0004553 ... A0A0H0XV02 N/A
    435592 5z87:A (2.3) BS02 MG ? GO:0004553 ... A0A0H0XV02 N/A
    435593 5z87:B (2.3) BS01 MG ? GO:0004553 ... A0A0H0XV02 N/A
    435594 5z87:B (2.3) BS02 MG ? GO:0004553 ... A0A0H0XV02 N/A
    435595 5z88:A (3.0) BS01 SIA N/A GO:0019031 ... N/A N/A
    435596 5z89:A (1.42) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834
    435597 5z8a:A (1.398) BS01 PLP ? GO:0008483 ... Q70KD9 30643280
    435598 5z8a:A (1.398) BS02 JIA ? GO:0008483 ... Q70KD9 30643280
    435599 5z8a:A (1.398) BS03 PLP ? GO:0008483 ... Q70KD9 30643280
    435600 5z8a:B (1.398) BS01 PLP ? GO:0008483 ... Q70KD9 30643280

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).