SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435601 5z8a:B (1.398) BS02 PLP ? GO:0008483 ... Q70KD9 30643280
    435602 5z8a:B (1.398) BS03 JIA ? GO:0008483 ... Q70KD9 30643280
    435603 5z8g:A (1.701) BS01 99L ? N/A O60885 N/A BindingDB: IC50=32230nM
    435604 5z8h:A (1.79) BS01 peptide ? GO:0008013 ... P25054 N/A
    435605 5z8k:A (1.759) BS01 PLP ? GO:0008483 ... Q70KD9 30643280
    435606 5z8k:A (1.759) BS02 XXX ? GO:0008483 ... Q70KD9 30643280
    435607 5z8k:A (1.759) BS03 PLP ? GO:0008483 ... Q70KD9 30643280
    435608 5z8k:B (1.759) BS01 PLP ? GO:0008483 ... Q70KD9 30643280
    435609 5z8k:B (1.759) BS02 PLP ? GO:0008483 ... Q70KD9 30643280
    435610 5z8k:B (1.759) BS03 XXX ? GO:0008483 ... Q70KD9 30643280
    435611 5z8l:A (2.005) BS01 peptide ? GO:0000976 ... F4JL28 30082787
    435612 5z8l:A (2.005) BS02 ZN ? GO:0000976 ... F4JL28 30082787
    435613 5z8l:A (2.005) BS03 ZN ? GO:0000976 ... F4JL28 30082787
    435614 5z8n:A (3.1) BS01 peptide ? GO:0003682 ... F4JL28 30082787
    435615 5z8n:A (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    435616 5z8n:A (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    435617 5z8n:B (3.1) BS01 peptide ? GO:0003682 ... F4JL28 30082787
    435618 5z8n:B (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    435619 5z8n:B (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    435620 5z8n:C (3.1) BS01 peptide ? GO:0003682 ... F4JL28 30082787
    435621 5z8n:C (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    435622 5z8n:C (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    435623 5z8r:A (2.0) BS01 99O ? N/A O60885 N/A
    435624 5z8s:A (1.973) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    435625 5z8t:A (2.33) BS01 FAD ? GO:0000166 ... C8WV06 N/A
    435626 5z8t:B (2.33) BS01 FAD ? GO:0000166 ... C8WV06 N/A
    435627 5z8t:B (2.33) BS02 FAD ? GO:0000166 ... C8WV06 N/A
    435628 5z8t:C (2.33) BS01 FAD ? GO:0000166 ... C8WV06 N/A
    435629 5z8t:C (2.33) BS02 FAD ? GO:0000166 ... C8WV06 N/A
    435630 5z8u:A (1.9) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    435631 5z8u:B (1.9) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    435632 5z8y:A (3.4) BS01 ZN ? N/A O43300 30262834
    435633 5z8y:B (3.4) BS01 CA ? N/A P58400 30262834
    435634 5z8y:C (3.4) BS01 ZN ? N/A O43300 30262834
    435635 5z8y:D (3.4) BS01 CA ? N/A P58400 30262834
    435636 5z8y:E (3.4) BS01 ZN ? N/A O43300 30262834
    435637 5z8y:F (3.4) BS01 CA ? N/A P58400 30262834
    435638 5z8y:G (3.4) BS01 ZN ? N/A O43300 30262834
    435639 5z8y:H (3.4) BS01 CA ? N/A P58400 30262834
    435640 5z8z:A (1.8) BS01 99R ? N/A O60885 N/A
    435641 5z90:A (1.8) BS01 99U ? N/A O60885 N/A BindingDB: IC50=1910nM
    435642 5z91:A (3.004) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    435643 5z91:A (3.004) BS02 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    435644 5z93:A (1.945) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435645 5z93:A (1.945) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435646 5z94:A (1.899) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435647 5z94:A (1.899) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435648 5z94:B (1.899) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435649 5z94:B (1.899) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    435650 5z95:A (1.2) BS01 EGC ? GO:0046872 ... A0A0M3PNA2 30021834
    435651 5z96:A (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435652 5z96:A (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435653 5z96:B (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435654 5z96:B (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435655 5z96:C (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435656 5z96:C (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435657 5z96:D (3.28) BS01 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435658 5z96:D (3.28) BS02 Y01 ? GO:0005216 ... Q9QUQ5 30082700
    435659 5z97:A (2.32) BS01 ZER ? N/A A0A0D2ILK1 N/A
    435660 5z97:B (2.32) BS01 ZER ? N/A A0A0D2ILK1 N/A
    435661 5z97:C (2.32) BS01 ZER ? N/A A0A0D2ILK1 N/A
    435662 5z98:A (2.2) BS01 ZN 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    435663 5z98:B (2.2) BS01 rna 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    435664 5z98:B (2.2) BS02 rna 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    435665 5z98:B (2.2) BS03 ZN 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    435666 5z99:A (1.494) BS01 SLB ? GO:0015833 ... Q7VL18 30315109 MOAD: Kd=133nM
    435667 5z9b:A (2.1) BS01 HX3 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435668 5z9b:A (2.1) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435669 5z9b:B (2.1) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435670 5z9b:B (2.1) BS02 HX3 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435671 5z9c:A (-1.00) BS01 MQO ? N/A O60885 29343578
    435672 5z9e:A (1.8) BS01 27K 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435673 5z9e:A (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435674 5z9e:B (1.8) BS01 27K 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435675 5z9e:B (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435676 5z9f:A (1.76) BS01 0R0 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435677 5z9f:A (1.76) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435678 5z9f:B (1.76) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435679 5z9f:B (1.76) BS02 0R0 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435680 5z9i:A (2.199) BS01 HEM ? GO:0004497 ... G0LWB2 32243060
    435681 5z9j:A (2.0) BS01 HEM ? GO:0004497 ... G0LWB2 32243060
    435682 5z9j:B (2.0) BS01 HEM ? GO:0004497 ... G0LWB2 32243060
    435683 5z9j:C (2.0) BS01 HEM ? GO:0004497 ... G0LWB2 32243060
    435684 5z9j:D (2.0) BS01 HEM ? GO:0004497 ... G0LWB2 32243060
    435685 5z9k:A (1.89) BS01 99X ? N/A O60885 N/A
    435686 5z9l:A (1.6) BS01 8H8 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435687 5z9l:A (1.6) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435688 5z9l:B (1.6) BS01 8H8 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435689 5z9l:B (1.6) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435690 5z9m:A (2.74) BS01 BZ2 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435691 5z9m:B (2.74) BS01 BZ2 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435692 5z9n:A (2.54) BS01 HX5 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435693 5z9o:A (2.7) BS01 CO3 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    435694 5z9o:A (2.7) BS02 EPH 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    435695 5z9o:B (2.7) BS01 CO3 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    435696 5z9o:B (2.7) BS02 EPH 2.1.1.79 GO:0006629 ... Q5FJM0 30828715
    435697 5z9p:A (1.45) BS01 AX7 5.6.2.2 GO:0003677 ... P0A0K8 30429968
    435698 5z9p:B (1.45) BS01 AX7 5.6.2.2 GO:0003677 ... P0A0K8 30429968
    435699 5z9q:A (1.8) BS01 HX4 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435700 5z9q:A (1.8) BS02 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435701 5z9q:B (1.8) BS01 AX7 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435702 5z9q:B (1.8) BS02 HX4 5.6.2.2 GO:0003677 ... P0AES6 30429968
    435703 5z9s:A (2.3) BS01 BGC 3.2.1.21 GO:0004553 ... A0A133LV16 29421652
    435704 5z9s:B (2.3) BS01 BGC 3.2.1.21 GO:0004553 ... A0A133LV16 29421652
    435705 5z9t:A (1.8) BS01 LGU N/A N/A N/A 31004719
    435706 5z9t:A (1.8) BS02 LGU N/A N/A N/A 31004719
    435707 5z9t:A (1.8) BS03 LGU N/A N/A N/A 31004719
    435708 5z9t:B (1.8) BS01 LGU N/A N/A N/A 31004719
    435709 5z9t:B (1.8) BS02 LGU N/A N/A N/A 31004719
    435710 5z9t:B (1.8) BS03 LGU N/A N/A N/A 31004719
    435711 5z9w:A (3.6) BS01 rna ? GO:0019013 ... P18272 30333622
    435712 5z9x:A (2.8) BS01 rna 3.1.-.- GO:0000175 ... A3KPE8 30181559
    435713 5z9x:A (2.8) BS02 MG 3.1.-.- GO:0000175 ... A3KPE8 30181559
    435714 5z9y:A (1.48) BS01 DXP 2.8.1.10 GO:0005737 ... P9WG73 29428731
    435715 5z9y:B (1.48) BS01 DXP 2.8.1.10 GO:0005737 ... P9WG73 29428731
    435716 5za0:A (2.0) BS01 GLC 1.2.1.12 GO:0000166 ... P0A9B2 29717994
    435717 5za1:A (2.52) BS01 9A0 ? GO:0003677 ... P51449 30301676 BindingDB: IC50=14nM
    435718 5za1:B (2.52) BS01 9A0 ? GO:0003677 ... P51449 30301676 BindingDB: IC50=14nM
    435719 5za2:A (1.503) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L387 29439972 MOAD: Kd=1700nM
    435720 5za2:B (1.503) BS01 NXL 3.5.2.6 GO:0008800 ... Q9L387 29439972 MOAD: Kd=1700nM
    435721 5za7:U (1.7) BS01 HMX 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=1356nM
    435722 5za8:U (1.9) BS01 27I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=508nM
    BindingDB: Ki=508nM
    435723 5za9:U (1.62) BS01 50I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=183nM
    BindingDB: Ki=183nM, IC50=530nM
    435724 5zab:A (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435725 5zab:B (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435726 5zab:C (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435727 5zab:D (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435728 5zab:E (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435729 5zab:F (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435730 5zab:G (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435731 5zab:H (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435732 5zab:I (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435733 5zab:J (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435734 5zab:K (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435735 5zab:L (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435736 5zab:M (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435737 5zab:N (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435738 5zab:O (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435739 5zab:P (2.147) BS01 9A3 ? GO:0005509 ... P02592 29796619
    435740 5zac:A (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    435741 5zac:A (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    435742 5zac:B (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    435743 5zac:B (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    435744 5zac:C (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    435745 5zac:C (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    435746 5zac:C (2.59) BS03 MAN ? GO:0030246 ... P02866 N/A
    435747 5zac:D (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    435748 5zac:D (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    435749 5zac:D (2.59) BS03 CA ? GO:0030246 ... P02866 N/A
    435750 5zac:D (2.59) BS04 MAN ? GO:0030246 ... P02866 N/A
    435751 5zad:A (2.54) BS01 dna 5.6.2.2 GO:0003677 ... Q02880 30297860
    435752 5zad:A (2.54) BS02 dna 5.6.2.2 GO:0003677 ... Q02880 30297860
    435753 5zad:B (2.54) BS01 dna 5.6.2.2 GO:0003677 ... Q02880 30297860
    435754 5zad:B (2.54) BS02 dna 5.6.2.2 GO:0003677 ... Q02880 30297860
    435755 5zae:U (1.73) BS01 EAU 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=156nM
    BindingDB: Ki=156nM
    435756 5zaf:U (1.65) BS01 28I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=166nM
    BindingDB: Ki=166nM
    435757 5zag:U (1.95) BS01 94I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=108nM
    BindingDB: Ki=108nM
    435758 5zah:U (2.98) BS01 30I 3.4.21.73 GO:0004252 ... P00749 30130401 BindingDB: Ki=53nM, IC50=39nM
    435759 5zai:A (1.8) BS01 COA 4.2.1.116 GO:0003824 ... A4YI89 30013155
    435760 5zai:B (1.8) BS01 COA 4.2.1.116 GO:0003824 ... A4YI89 30013155
    435761 5zai:C (1.8) BS01 COA 4.2.1.116 GO:0003824 ... A4YI89 30013155
    435762 5zai:C (1.8) BS02 COA 4.2.1.116 GO:0003824 ... A4YI89 30013155
    435763 5zai:E (1.8) BS01 COA 4.2.1.116 GO:0003824 ... A4YI89 30013155
    435764 5zaj:U (1.65) BS01 32I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=42nM
    BindingDB: Ki=42nM
    435765 5zal:A (4.7) BS01 rna 3.1.26.3 GO:0000122 ... Q9UPY3 29706542
    435766 5zam:A (5.7) BS01 rna 3.1.26.3 GO:0000122 ... Q9UPY3 29706542
    435767 5zan:A (2.85) BS01 9A6 2.7.11.1 GO:0000212 ... O14965 N/A
    435768 5zax:A (2.36) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435769 5zax:A (2.36) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435770 5zax:A (2.36) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435771 5zax:A (2.36) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435772 5zax:A (2.36) BS05 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435773 5zax:B (2.36) BS01 TMP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435774 5zax:B (2.36) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435775 5zax:B (2.36) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435776 5zax:B (2.36) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435777 5zb0:A (1.19) BS01 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435778 5zb0:A (1.19) BS02 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435779 5zb0:A (1.19) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435780 5zb0:A (1.19) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435781 5zb0:A (1.19) BS05 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435782 5zb0:B (1.19) BS01 TYD 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435783 5zb0:B (1.19) BS02 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435784 5zb0:B (1.19) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435785 5zb0:B (1.19) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435786 5zb0:B (1.19) BS05 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435787 5zb1:A (3.061) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    435788 5zb2:A (2.30001) BS01 9FO ? N/A P06779 30840920
    435789 5zb3:A (3.506) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    435790 5zb3:B (3.506) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    435791 5zb4:A (1.92) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435792 5zb4:A (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435793 5zb4:A (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435794 5zb4:A (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435795 5zb4:A (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435796 5zb4:A (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435797 5zb4:A (1.92) BS07 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435798 5zb4:A (1.92) BS08 TMP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435799 5zb4:B (1.92) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435800 5zb4:B (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).