SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435801 5zb4:B (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435802 5zb4:B (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435803 5zb4:B (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435804 5zb4:B (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435805 5zb4:B (1.92) BS07 TMP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    435806 5zb8:A (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    435807 5zb8:A (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    435808 5zb8:A (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    435809 5zb8:B (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    435810 5zb8:B (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    435811 5zb8:B (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    435812 5zb8:C (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    435813 5zb8:C (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    435814 5zb8:C (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    435815 5zb8:D (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    435816 5zb8:D (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    435817 5zb8:D (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    435818 5zb8:E (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    435819 5zb8:E (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    435820 5zb8:E (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    435821 5zba:A (3.5) BS01 COA 2.3.1.48 GO:0004402 ... Q4WUS9 30057113
    435822 5zbc:A (2.2) BS01 FAD 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435823 5zbc:B (2.2) BS01 FAD 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435824 5zbd:A (1.8) BS01 TRP 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435825 5zbd:A (1.8) BS02 FAD 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435826 5zbd:B (1.8) BS01 TRP 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435827 5zbd:B (1.8) BS02 FAD 1.4.3.23 GO:0016491 ... Q9S3V1 30053101
    435828 5zbe:A (1.6) BS01 FE2 N/A N/A N/A 30742895
    435829 5zbf:A (1.6) BS01 ENO N/A N/A N/A 30742895
    435830 5zbf:A (1.6) BS02 FE2 N/A N/A N/A 30742895
    435831 5zbh:A (3.0) BS01 9AF 3.2.1.17 GO:0003796 ... P00720
    P25929
    29670288
    435832 5zbk:A (2.3) BS01 AMP 3.2.2.4
    3.2.2.n1
    GO:0005829 ... P48636 29901273
    435833 5zbl:C (2.3) BS01 AMP 3.2.2.n1 GO:0000166 ... Q8NN34 29901273
    435834 5zbl:D (2.3) BS01 AMP 3.2.2.n1 GO:0000166 ... Q8NN34 29901273
    435835 5zbm:A (2.8) BS01 FMN 1.1.3.15 GO:0000166 ... E1AXT8 30143257
    435836 5zbm:B (2.8) BS01 FMN 1.1.3.15 GO:0000166 ... E1AXT8 30143257
    435837 5zbq:A (2.7) BS01 9AO 3.2.1.17 GO:0001601 ... P00720
    P25929
    29670288
    435838 5zbr:A (2.0) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435839 5zbr:B (2.0) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435840 5zbr:B (2.0) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    435841 5zbr:C (2.0) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435842 5zbr:C (2.0) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    435843 5zbs:A (2.203) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435844 5zbs:A (2.203) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    435845 5zbs:B (2.203) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435846 5zbs:C (2.203) BS01 ANP ? GO:0003777 ... A0A0G2K8Z9 29752968
    435847 5zbs:C (2.203) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    435848 5zbu:A (3.2) BS01 ZN 2.3.2.27 N/A O43567 N/A
    435849 5zbu:A (3.2) BS02 ZN 2.3.2.27 N/A O43567 N/A
    435850 5zbu:D (3.2) BS01 ZN 2.3.2.27 N/A O43567 N/A
    435851 5zbu:D (3.2) BS02 ZN 2.3.2.27 N/A O43567 N/A
    435852 5zbx:A (2.58) BS01 dna ? GO:0000786 ... P49450
    P68431
    30718488
    435853 5zbx:A (2.58) BS02 dna ? GO:0000786 ... P49450
    P68431
    30718488
    435854 5zbx:B (2.58) BS01 dna ? GO:0000781 ... P62805 30718488
    435855 5zbx:B (2.58) BS02 dna ? GO:0000781 ... P62805 30718488
    435856 5zbx:C (2.58) BS01 dna ? GO:0000786 ... P04908 30718488
    435857 5zbx:C (2.58) BS02 dna ? GO:0000786 ... P04908 30718488
    435858 5zbx:D (2.58) BS01 dna ? GO:0000786 ... P06899 30718488
    435859 5zbx:D (2.58) BS02 dna ? GO:0000786 ... P06899 30718488
    435860 5zbx:E (2.58) BS01 dna ? GO:0000786 ... P49450
    P68431
    30718488
    435861 5zbx:E (2.58) BS02 dna ? GO:0000786 ... P49450
    P68431
    30718488
    435862 5zbx:F (2.58) BS01 dna ? GO:0000781 ... P62805 30718488
    435863 5zbx:F (2.58) BS02 dna ? GO:0000781 ... P62805 30718488
    435864 5zbx:G (2.58) BS01 dna ? GO:0000786 ... P04908 30718488
    435865 5zbx:G (2.58) BS02 dna ? GO:0000786 ... P04908 30718488
    435866 5zbx:H (2.58) BS01 dna ? GO:0000786 ... P06899 30718488
    435867 5zbx:H (2.58) BS02 dna ? GO:0000786 ... P06899 30718488
    435868 5zbz:A (1.3086) BS01 SAU 3.6.4.13 GO:0003676 ... P60842 31402318 MOAD: Kd=12.5uM
    435869 5zc0:A (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435870 5zc0:A (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435871 5zc0:B (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435872 5zc0:B (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435873 5zc0:C (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435874 5zc0:C (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435875 5zc0:D (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435876 5zc0:D (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435877 5zc0:E (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435878 5zc0:E (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435879 5zc0:F (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    435880 5zc0:F (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    435881 5zc2:A (2.898) BS01 FMN 1.5.1.36 GO:0009056 ... Q6Q271 29940152
    435882 5zc2:B (2.898) BS01 FMN 1.5.1.36 GO:0009056 ... Q6Q271 29940152
    435883 5zc4:A (1.906) BS01 ZN 2.3.2.27 N/A O43567 N/A
    435884 5zc4:A (1.906) BS02 ZN 2.3.2.27 N/A O43567 N/A
    435885 5zc4:D (1.906) BS01 ZN 2.3.2.27 N/A O43567 N/A
    435886 5zc4:D (1.906) BS02 ZN 2.3.2.27 N/A O43567 N/A
    435887 5zc5:U (1.9) BS01 09I 3.4.21.73 GO:0004252 ... P00749 30130401 MOAD: Ki=88nM
    BindingDB: Ki=88nM, IC50=430nM
    435888 5zc6:A (-1.00) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30141910
    435889 5zc6:A (-1.00) BS02 KBF 3.6.5.2 GO:0003924 ... P01112 30141910
    435890 5zc7:A (2.0) BS01 ADE 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    435891 5zc7:B (2.0) BS01 ADE 2.4.2.7 GO:0003999 ... Q66DQ2 N/A
    435892 5zc9:A (2.0) BS01 rna 3.6.4.13 GO:0000339 ... P60842 30595437
    435893 5zc9:A (2.0) BS02 ANP 3.6.4.13 GO:0000339 ... P60842 30595437
    435894 5zc9:A (2.0) BS03 RCG 3.6.4.13 GO:0000339 ... P60842 30595437 BindingDB: IC50=47nM, Kd=156nM
    435895 5zca:A (1.801) BS01 GLC ? GO:0005515 ... P03034
    P0AEX9
    N/A
    435896 5zca:A (1.801) BS02 GLC ? GO:0005515 ... P03034
    P0AEX9
    N/A
    435897 5zcb:A (2.5) BS01 CA N/A GO:0005975 ... N/A 29870070
    435898 5zcb:A (2.5) BS02 CA N/A GO:0005975 ... N/A 29870070
    435899 5zcc:A (1.704) BS01 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435900 5zcc:A (1.704) BS02 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435901 5zcc:A (1.704) BS03 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435902 5zcc:A (1.704) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435903 5zcd:A (1.707) BS01 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435904 5zcd:A (1.707) BS02 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435905 5zcd:A (1.707) BS03 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435906 5zcd:A (1.707) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435907 5zcd:A (1.707) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435908 5zce:A (1.555) BS01 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435909 5zce:A (1.555) BS02 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435910 5zce:A (1.555) BS03 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435911 5zce:A (1.555) BS04 GLC ? GO:0004556 ... A0A2Z5WH92 29870070
    435912 5zce:A (1.555) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435913 5zce:A (1.555) BS06 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    435914 5zcg:A (2.1) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435915 5zcg:A (2.1) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435916 5zcg:B (2.1) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435917 5zcg:B (2.1) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435918 5zcg:C (2.1) BS01 A8S ? N/A Q6EN42 31541388
    435919 5zcg:D (2.1) BS01 A8S ? N/A Q6EN42 31541388
    435920 5zch:A (2.474) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435921 5zch:A (2.474) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435922 5zch:B (2.474) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435923 5zch:B (2.474) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435924 5zch:C (2.474) BS01 A8S ? N/A Q6EN42 31541388
    435925 5zch:D (2.474) BS01 A8S ? N/A Q6EN42 31541388
    435926 5zcl:A (2.661) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435927 5zcl:A (2.661) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435928 5zcl:B (2.661) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435929 5zcl:B (2.661) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    435930 5zcl:C (2.661) BS01 A8S ? N/A Q6EN42 31541388
    435931 5zcl:D (2.661) BS01 A8S ? N/A Q6EN42 31541388
    435932 5zcm:A (1.7) BS01 NDP 1.1.1.307 GO:0000166 ... A0A0M4HL56 30269423
    435933 5zco:A (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435934 5zco:A (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435935 5zco:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435936 5zco:A (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435937 5zco:A (1.9) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435938 5zco:A (1.9) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435939 5zco:B (1.9) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435940 5zco:C (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435941 5zco:C (1.9) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435942 5zco:C (1.9) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435943 5zco:F (1.9) BS01 ZN ? GO:0005740 ... P00428 30077971
    435944 5zco:J (1.9) BS01 DMU ? GO:0006123 ... P07470 30077971
    435945 5zco:J (1.9) BS02 DMU ? GO:0006123 ... P07470 30077971
    435946 5zco:M (1.9) BS01 DMU ? GO:0006123 ... P10175 30077971
    435947 5zco:N (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435948 5zco:N (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435949 5zco:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435950 5zco:N (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435951 5zco:N (1.9) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435952 5zco:N (1.9) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435953 5zco:O (1.9) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435954 5zco:P (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435955 5zco:P (1.9) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435956 5zco:P (1.9) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435957 5zco:S (1.9) BS01 ZN ? GO:0005740 ... P00428 30077971
    435958 5zco:W (1.9) BS01 DMU ? GO:0006123 ... P07470 30077971
    435959 5zco:Z (1.9) BS01 DMU ? GO:0006123 ... P10175 30077971
    435960 5zcp:A (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435961 5zcp:A (1.65) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435962 5zcp:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435963 5zcp:A (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435964 5zcp:A (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435965 5zcp:A (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435966 5zcp:B (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435967 5zcp:B (1.65) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435968 5zcp:C (1.65) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435969 5zcp:C (1.65) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435970 5zcp:C (1.65) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435971 5zcp:F (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    435972 5zcp:J (1.65) BS01 DMU ? GO:0006123 ... P07470 30077971
    435973 5zcp:J (1.65) BS02 DMU ? GO:0006123 ... P07470 30077971
    435974 5zcp:M (1.65) BS01 DMU ? GO:0006123 ... P10175 30077971
    435975 5zcp:N (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435976 5zcp:N (1.65) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435977 5zcp:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435978 5zcp:N (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435979 5zcp:N (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435980 5zcp:N (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435981 5zcp:O (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 30077971
    435982 5zcp:O (1.65) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435983 5zcp:P (1.65) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435984 5zcp:P (1.65) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435985 5zcp:P (1.65) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435986 5zcp:S (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    435987 5zcp:W (1.65) BS01 DMU ? GO:0006123 ... P07470 30077971
    435988 5zcp:Z (1.65) BS01 DMU ? GO:0006123 ... P10175 30077971
    435989 5zcq:A (1.65) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435990 5zcq:A (1.65) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 30077971
    435991 5zcq:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    435992 5zcq:A (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    435993 5zcq:A (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435994 5zcq:A (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    435995 5zcq:B (1.65) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 30077971
    435996 5zcq:C (1.65) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435997 5zcq:C (1.65) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435998 5zcq:C (1.65) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 30077971
    435999 5zcq:F (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    436000 5zcq:J (1.65) BS01 DMU ? GO:0006123 ... P07470 30077971

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).