SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    436201 5ze3:B (2.4) BS02 ZN 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    436202 5ze4:A (2.11) BS01 FES 4.2.1.9 GO:0003824 ... Q9LIR4 29995859
    436203 5ze4:A (2.11) BS02 MG 4.2.1.9 GO:0003824 ... Q9LIR4 29995859
    436204 5ze6:A (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436205 5ze6:B (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436206 5ze6:B (2.5) BS02 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436207 5ze6:B (2.5) BS03 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436208 5ze6:C (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436209 5ze6:D (2.5) BS01 HJX 2.5.1.90 GO:0004659 ... P0AD57 30730737
    436210 5ze8:A (1.6) BS01 HEC ? N/A A0A2P1N6U9 29691716
    436211 5ze8:A (1.6) BS02 HEC ? N/A A0A2P1N6U9 29691716
    436212 5ze8:A (1.6) BS03 HEC ? N/A A0A2P1N6U9 29691716
    436213 5ze8:A (1.6) BS04 HEC ? N/A A0A2P1N6U9 29691716
    436214 5ze8:A (1.6) BS05 HEC ? N/A A0A2P1N6U9 29691716
    436215 5ze9:A (2.102) BS01 ANP 7.2.2.1 GO:0005515 ... Q08636 30729160
    436216 5ze9:B (2.102) BS01 ANP 7.2.2.1 GO:0005515 ... Q08636 30729160
    436217 5ze9:C (2.102) BS01 ANP 7.2.2.1 GO:0005515 ... Q08636 30729160
    436218 5ze9:D (2.102) BS01 ANP ? GO:0005515 ... Q08637 30729160
    436219 5ze9:E (2.102) BS01 ANP ? GO:0005515 ... Q08637 30729160
    436220 5ze9:F (2.102) BS01 ANP ? GO:0005515 ... Q08637 30729160
    436221 5zeb:1 (3.4) BS01 rna ? GO:0003735 ... A0QSG7 30206241
    436222 5zeb:1 (3.4) BS02 rna ? GO:0003735 ... A0QSG7 30206241
    436223 5zeb:2 (3.4) BS01 rna ? GO:0003735 ... A0R215 30206241
    436224 5zeb:3 (3.4) BS01 rna ? GO:0003735 ... A0R3I9 30206241
    436225 5zeb:4 (3.4) BS01 rna ? GO:0003735 ... A0QS39 30206241
    436226 5zeb:5 (3.4) BS01 rna ? GO:0003735 ... A0R7K0 30206241
    436227 5zeb:6 (3.4) BS01 rna ? GO:0003735 ... A0QYU7 30206241
    436228 5zeb:7 (3.4) BS01 rna ? GO:0003735 ... A0QSL4 30206241
    436229 5zeb:C (3.4) BS01 rna ? GO:0002181 ... A0QSD4 30206241
    436230 5zeb:C (3.4) BS02 rna ? GO:0002181 ... A0QSD4 30206241
    436231 5zeb:D (3.4) BS01 rna ? GO:0003735 ... A0QSD1 30206241
    436232 5zeb:E (3.4) BS01 rna ? GO:0003735 ... A0QSD2 30206241
    436233 5zeb:F (3.4) BS01 rna ? GO:0000049 ... A0QSG1 30206241
    436234 5zeb:F (3.4) BS02 rna ? GO:0000049 ... A0QSG1 30206241
    436235 5zeb:F (3.4) BS03 rna ? GO:0000049 ... A0QSG1 30206241
    436236 5zeb:G (3.4) BS01 rna ? GO:0002181 ... A0QSG4 30206241
    436237 5zeb:H (3.4) BS01 rna ? GO:0003735 ... A0R7F6 30206241
    436238 5zeb:I (3.4) BS01 rna ? GO:0003735 ... A0QS62 30206241
    436239 5zeb:J (3.4) BS01 rna ? GO:0003735 ... A0QS45 30206241
    436240 5zeb:K (3.4) BS01 rna ? GO:0003729 ... A0QSP8 30206241
    436241 5zeb:L (3.4) BS01 rna ? GO:0003735 ... A0QSF9 30206241
    436242 5zeb:L (3.4) BS02 rna ? GO:0003735 ... A0QSF9 30206241
    436243 5zeb:M (3.4) BS01 rna ? GO:0003735 ... A0QSG8 30206241
    436244 5zeb:N (3.4) BS01 rna ? GO:0000049 ... A0QSD8 30206241
    436245 5zeb:O (3.4) BS01 rna ? GO:0003735 ... A0QSL9 30206241
    436246 5zeb:P (3.4) BS01 rna ? GO:0003735 ... A0QSG5 30206241
    436247 5zeb:P (3.4) BS02 rna ? GO:0003735 ... A0QSG5 30206241
    436248 5zeb:Q (3.4) BS01 rna ? GO:0003735 ... A0QV42 30206241
    436249 5zeb:Q (3.4) BS02 rna ? GO:0003735 ... A0QV42 30206241
    436250 5zeb:R (3.4) BS01 rna ? GO:0000027 ... A0QYU6 30206241
    436251 5zeb:S (3.4) BS01 rna ? GO:0003723 ... A0R151 30206241
    436252 5zeb:T (3.4) BS01 rna ? GO:0003735 ... A0QSD6 30206241
    436253 5zeb:U (3.4) BS01 rna ? GO:0003735 ... A0QSD3 30206241
    436254 5zeb:V (3.4) BS01 rna ? GO:0003723 ... A0QSG0 30206241
    436255 5zeb:W (3.4) BS01 rna ? GO:0003723 ... A0R3D2 30206241
    436256 5zeb:X (3.4) BS01 rna ? GO:0003735 ... A0R150 30206241
    436257 5zeb:X (3.4) BS02 rna ? GO:0003735 ... A0R150 30206241
    436258 5zeb:Y (3.4) BS01 rna ? GO:0003735 ... A0QV03 30206241
    436259 5zeb:Z (3.4) BS01 rna ? GO:0003735 ... A0QSD9 30206241
    436260 5zeb:b (3.4) BS01 rna ? GO:0003735 ... A0QVB8 30206241
    436261 5zeb:c (3.4) BS01 rna ? GO:0003676 ... A0QSD7 30206241
    436262 5zeb:d (3.4) BS01 rna ? GO:0003723 ... A0QSL7 30206241
    436263 5zeb:e (3.4) BS01 rna ? GO:0003723 ... A0QSG6 30206241
    436264 5zeb:f (3.4) BS01 rna N/A GO:0003735 ... N/A 30206241
    436265 5zeb:g (3.4) BS01 rna ? GO:0000049 ... A0QS97 30206241
    436266 5zeb:h (3.4) BS01 rna ? GO:0003735 ... A0QSG3 30206241
    436267 5zeb:i (3.4) BS01 rna ? GO:0003723 ... A0QSP9 30206241
    436268 5zeb:j (3.4) BS01 rna ? GO:0000049 ... A0QSD0 30206241
    436269 5zeb:k (3.4) BS01 rna ? GO:0003735 ... A0QSL6 30206241
    436270 5zeb:l (3.4) BS01 rna ? GO:0000049 ... A0QS96 30206241
    436271 5zeb:m (3.4) BS01 rna ? GO:0000049 ... A0QSL5 30206241
    436272 5zeb:n (3.4) BS01 rna ? GO:0003735 ... A0QSG2 30206241
    436273 5zeb:o (3.4) BS01 rna ? GO:0003735 ... A0QVQ3 30206241
    436274 5zeb:o (3.4) BS02 rna ? GO:0003735 ... A0QVQ3 30206241
    436275 5zeb:p (3.4) BS01 rna ? GO:0003735 ... A0QV37 30206241
    436276 5zeb:q (3.4) BS01 rna ? GO:0003735 ... A0QSE0 30206241
    436277 5zeb:r (3.4) BS01 rna ? GO:0003735 ... A0R7F7 30206241
    436278 5zeb:s (3.4) BS01 rna ? GO:0000028 ... A0QSD5 30206241
    436279 5zeb:t (3.4) BS01 rna ? GO:0003723 ... A0R102 30206241
    436280 5zeb:u (3.4) BS01 rna ? N/A A0QR10 30206241
    436281 5zeb:u (3.4) BS02 rna ? N/A A0QR10 30206241
    436282 5zec:A (1.779) BS01 NAP ? GO:0000166 ... A7TM80 30247889
    436283 5zec:B (1.779) BS01 NAP ? GO:0000166 ... A7TM80 30247889
    436284 5zed:A (2.199) BS01 NAP ? GO:0000166 ... A7TM80 30247889
    436285 5zed:B (2.199) BS01 NAP ? GO:0000166 ... A7TM80 30247889
    436286 5zee:A (1.74) BS01 HAR 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436287 5zee:A (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436288 5zee:A (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436289 5zee:B (1.74) BS01 HAR 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436290 5zee:B (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436291 5zee:B (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436292 5zef:A (2.01) BS01 NVA 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436293 5zef:A (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436294 5zef:A (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436295 5zef:B (2.01) BS01 NVA 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436296 5zef:B (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436297 5zef:B (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436298 5zeh:A (2.36) BS01 ORN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436299 5zeh:A (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436300 5zeh:A (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436301 5zeh:B (2.36) BS01 ORN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436302 5zeh:B (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436303 5zeh:B (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    436304 5zen:A (2.75) BS01 dna 5.6.2.2 GO:0003677 ... Q02880 30082834
    436305 5zen:A (2.75) BS02 dna 5.6.2.2 GO:0003677 ... Q02880 30082834
    436306 5zen:A (2.75) BS03 MN 5.6.2.2 GO:0003677 ... Q02880 30082834
    436307 5zeo:A (1.77) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 29645029
    436308 5zep:0 (3.4) BS01 rna N/A N/A N/A 30206241
    436309 5zep:1 (3.4) BS01 rna ? GO:0003735 ... A0QS39 30206241
    436310 5zep:2 (3.4) BS01 rna ? GO:0003735 ... A0R7K0 30206241
    436311 5zep:3 (3.4) BS01 rna ? GO:0003735 ... A0QYU7 30206241
    436312 5zep:4 (3.4) BS01 rna ? GO:0003735 ... A0QSL4 30206241
    436313 5zep:C (3.4) BS01 rna ? GO:0002181 ... A0QSD4 30206241
    436314 5zep:D (3.4) BS01 rna ? GO:0003735 ... A0QSD1 30206241
    436315 5zep:E (3.4) BS01 rna ? GO:0003735 ... A0QSD2 30206241
    436316 5zep:F (3.4) BS01 rna ? GO:0000049 ... A0QSG1 30206241
    436317 5zep:F (3.4) BS02 rna ? GO:0000049 ... A0QSG1 30206241
    436318 5zep:G (3.4) BS01 rna ? GO:0002181 ... A0QSG4 30206241
    436319 5zep:H (3.4) BS01 rna ? GO:0003735 ... A0R7F6 30206241
    436320 5zep:I (3.4) BS01 rna ? GO:0003735 ... A0QS62 30206241
    436321 5zep:J (3.4) BS01 rna ? GO:0003735 ... A0QS45 30206241
    436322 5zep:K (3.4) BS01 rna ? GO:0003729 ... A0QSP8 30206241
    436323 5zep:L (3.4) BS01 rna ? GO:0003735 ... A0QSF9 30206241
    436324 5zep:L (3.4) BS02 rna ? GO:0003735 ... A0QSF9 30206241
    436325 5zep:M (3.4) BS01 rna ? GO:0003735 ... A0QSG8 30206241
    436326 5zep:N (3.4) BS01 rna ? GO:0000049 ... A0QSD8 30206241
    436327 5zep:O (3.4) BS01 rna ? GO:0003735 ... A0QSL9 30206241
    436328 5zep:P (3.4) BS01 rna ? GO:0003735 ... A0QSG5 30206241
    436329 5zep:P (3.4) BS02 rna ? GO:0003735 ... A0QSG5 30206241
    436330 5zep:Q (3.4) BS01 rna ? GO:0003735 ... A0QV42 30206241
    436331 5zep:Q (3.4) BS02 rna ? GO:0003735 ... A0QV42 30206241
    436332 5zep:R (3.4) BS01 rna ? GO:0000027 ... A0QYU6 30206241
    436333 5zep:S (3.4) BS01 rna ? GO:0003723 ... A0R151 30206241
    436334 5zep:T (3.4) BS01 rna ? GO:0003735 ... A0QSD6 30206241
    436335 5zep:U (3.4) BS01 rna ? GO:0003735 ... A0QSD3 30206241
    436336 5zep:V (3.4) BS01 rna ? GO:0003723 ... A0QSG0 30206241
    436337 5zep:W (3.4) BS01 rna ? GO:0003723 ... A0R3D2 30206241
    436338 5zep:X (3.4) BS01 rna ? GO:0003735 ... A0R150 30206241
    436339 5zep:Y (3.4) BS01 rna ? GO:0003735 ... A0QV03 30206241
    436340 5zep:Z (3.4) BS01 rna ? GO:0003735 ... A0QSD9 30206241
    436341 5zep:b (3.4) BS01 rna ? GO:0003735 ... A0QVB8 30206241
    436342 5zep:c (3.4) BS01 rna ? GO:0003676 ... A0QSD7 30206241
    436343 5zep:d (3.4) BS01 rna ? GO:0003723 ... A0QSL7 30206241
    436344 5zep:e (3.4) BS01 rna ? GO:0003723 ... A0QSG6 30206241
    436345 5zep:f (3.4) BS01 rna N/A GO:0003735 ... N/A 30206241
    436346 5zep:g (3.4) BS01 rna ? GO:0000049 ... A0QS97 30206241
    436347 5zep:g (3.4) BS02 rna ? GO:0000049 ... A0QS97 30206241
    436348 5zep:h (3.4) BS01 rna ? GO:0003735 ... A0QSG3 30206241
    436349 5zep:i (3.4) BS01 rna ? GO:0003723 ... A0QSP9 30206241
    436350 5zep:j (3.4) BS01 rna ? GO:0000049 ... A0QSD0 30206241
    436351 5zep:k (3.4) BS01 rna ? GO:0003735 ... A0QSL6 30206241
    436352 5zep:l (3.4) BS01 rna ? GO:0000049 ... A0QS96 30206241
    436353 5zep:m (3.4) BS01 rna ? GO:0000049 ... A0QSL5 30206241
    436354 5zep:n (3.4) BS01 rna ? GO:0003735 ... A0QSG2 30206241
    436355 5zep:o (3.4) BS01 rna ? GO:0003735 ... A0QVQ3 30206241
    436356 5zep:o (3.4) BS02 rna ? GO:0003735 ... A0QVQ3 30206241
    436357 5zep:p (3.4) BS01 rna ? GO:0003735 ... A0QV37 30206241
    436358 5zep:q (3.4) BS01 rna ? GO:0003735 ... A0QSE0 30206241
    436359 5zep:r (3.4) BS01 rna ? GO:0003735 ... A0R7F7 30206241
    436360 5zep:s (3.4) BS01 rna ? GO:0000028 ... A0QSD5 30206241
    436361 5zep:t (3.4) BS01 rna ? GO:0003723 ... A0R102 30206241
    436362 5zep:u (3.4) BS01 rna ? N/A A0QR10 30206241
    436363 5zep:u (3.4) BS02 rna ? N/A A0QR10 30206241
    436364 5zep:v (3.4) BS01 rna ? GO:0003735 ... A0QSG7 30206241
    436365 5zep:v (3.4) BS02 rna ? GO:0003735 ... A0QSG7 30206241
    436366 5zep:x (3.4) BS01 rna ? GO:0005737 ... A0QTK6 30206241
    436367 5zep:x (3.4) BS02 rna ? GO:0005737 ... A0QTK6 30206241
    436368 5zep:y (3.4) BS01 rna ? GO:0003735 ... A0R215 30206241
    436369 5zep:z (3.4) BS01 rna ? GO:0003735 ... A0R3I9 30206241
    436370 5zeq:A (1.9) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    436371 5zeq:A (1.9) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    436372 5zeq:A (1.9) BS03 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    436373 5zeq:A (1.9) BS04 9B3 3.4.17.2 GO:0004181 ... P09955 29859906
    436374 5zeq:A (1.9) BS05 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    436375 5zer:A (2.39) BS01 HBI ? GO:0000166 ... Q31LX1 N/A
    436376 5zer:B (2.39) BS01 HBI ? GO:0000166 ... Q31LX1 N/A
    436377 5zes:A (2.03) BS01 UDP ? GO:0000166 ... Q31LX1 N/A
    436378 5zet:1 (3.2) BS01 rna ? GO:0003735 ... A0QSG7 30206241
    436379 5zet:1 (3.2) BS02 rna ? GO:0003735 ... A0QSG7 30206241
    436380 5zet:2 (3.2) BS01 rna ? GO:0003735 ... A0R215 30206241
    436381 5zet:3 (3.2) BS01 rna ? GO:0003735 ... A0R3I9 30206241
    436382 5zet:4 (3.2) BS01 rna ? GO:0003735 ... A0QS39 30206241
    436383 5zet:5 (3.2) BS01 rna ? GO:0003735 ... A0R7K0 30206241
    436384 5zet:6 (3.2) BS01 rna ? GO:0003735 ... A0QYU7 30206241
    436385 5zet:7 (3.2) BS01 rna ? GO:0003735 ... A0QSL4 30206241
    436386 5zet:C (3.2) BS01 rna ? GO:0002181 ... A0QSD4 30206241
    436387 5zet:D (3.2) BS01 rna ? GO:0003735 ... A0QSD1 30206241
    436388 5zet:E (3.2) BS01 rna ? GO:0003735 ... A0QSD2 30206241
    436389 5zet:F (3.2) BS01 rna ? GO:0000049 ... A0QSG1 30206241
    436390 5zet:F (3.2) BS02 rna ? GO:0000049 ... A0QSG1 30206241
    436391 5zet:G (3.2) BS01 rna ? GO:0002181 ... A0QSG4 30206241
    436392 5zet:H (3.2) BS01 rna ? GO:0003735 ... A0R7F6 30206241
    436393 5zet:I (3.2) BS01 rna ? GO:0003735 ... A0QS62 30206241
    436394 5zet:J (3.2) BS01 rna ? GO:0003735 ... A0QS45 30206241
    436395 5zet:K (3.2) BS01 rna ? GO:0003729 ... A0QSP8 30206241
    436396 5zet:L (3.2) BS01 rna ? GO:0003735 ... A0QSF9 30206241
    436397 5zet:M (3.2) BS01 rna ? GO:0003735 ... A0QSG8 30206241
    436398 5zet:N (3.2) BS01 rna ? GO:0000049 ... A0QSD8 30206241
    436399 5zet:O (3.2) BS01 rna ? GO:0003735 ... A0QSL9 30206241
    436400 5zet:P (3.2) BS01 rna ? GO:0003735 ... A0QSG5 30206241

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).