SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    437801 5zh4:B (2.6) BS01 LYS 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437802 5zh4:B (2.6) BS02 9CC 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437803 5zh5:A (3.08) BS01 LYS 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437804 5zh5:A (3.08) BS02 9CX 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437805 5zh5:B (3.08) BS01 LYS 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437806 5zh5:B (3.08) BS02 9CX 6.1.1.6 GO:0000049 ... W7JP72 29779382
    437807 5zh6:A (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    437808 5zh6:A (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    437809 5zh6:B (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    437810 5zh6:B (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    437811 5zha:A (1.84) BS01 MN ? GO:0007155 ... C6XF58 30125692
    437812 5zhe:B (2.18) BS01 HJX 2.5.1.31 GO:0000287 ... P60472 30730737
    437813 5zhf:A (1.65) BS01 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    437814 5zhf:B (1.65) BS01 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    437815 5zhj:A (1.75) BS01 SAH 2.1.1.228 GO:0002939 ... P9WFY7 31442049 MOAD: Kd=10.1uM
    BindingDB: Kd=10100nM
    437816 5zhk:A (2.3) BS01 9D6 2.1.1.228 GO:0002939 ... P9WFY7 31442049
    437817 5zhl:A (2.25) BS01 9D0 2.1.1.228 GO:0002939 ... P9WFY7 31442049 MOAD: Kd=0.19uM
    BindingDB: Kd=190nM
    437818 5zhm:A (2.76) BS01 9D3 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437819 5zhm:A (2.76) BS02 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437820 5zhm:B (2.76) BS01 SAM 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437821 5zhn:A (2.65) BS01 9D0 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437822 5zhn:B (2.65) BS01 9D0 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437823 5zhn:B (2.65) BS02 9D0 2.1.1.228 GO:0002939 ... Q02RL6 31442049
    437824 5zho:A (1.401) BS01 FUC ? N/A Q82040 29593033
    437825 5zhp:A (3.1) BS01 GLC 3.2.1.17 GO:0003796 ... P00720
    P08483
    30404914
    437826 5zhp:A (3.1) BS02 9EC 3.2.1.17 GO:0003796 ... P00720
    P08483
    30404914
    437827 5zhp:B (3.1) BS01 9EC 3.2.1.17 GO:0003796 ... P00720
    P08483
    30404914
    437828 5zhr:A (1.45) BS01 KOK 3.1.-.- N/A Q10QA5 30391752
    437829 5zhr:B (1.45) BS01 KOK 3.1.-.- N/A Q10QA5 30391752
    437830 5zhs:A (1.49) BS01 KAT 3.1.-.- N/A Q10QA5 30391752
    437831 5zht:A (1.532) BS01 9GU 3.1.-.- N/A Q10QA5 30391752
    437832 5zhv:A (2.4) BS01 ZN ? GO:0003677 ... I6X7F9 30266832
    437833 5zhv:A (2.4) BS02 ZN ? GO:0003677 ... I6X7F9 30266832
    437834 5zhv:B (2.4) BS01 ZN ? GO:0003677 ... I6X7F9 30266832
    437835 5zhw:A (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    437836 5zhw:A (2.18) BS02 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    437837 5zhw:A (2.18) BS03 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    437838 5zhw:B (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    437839 5zhw:B (2.18) BS02 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    437840 5zhw:B (2.18) BS03 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    437841 5zhx:A (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    437842 5zhx:B (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    437843 5zhx:C (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    437844 5zhx:D (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    437845 5zhz:A (1.18) BS01 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    437846 5zhz:A (1.18) BS02 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    437847 5zhz:A (1.18) BS03 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    437848 5zi2:A (2.0) BS01 NAD 1.1.1.37 GO:0003729 ... P32419 30279312
    437849 5zi2:B (2.0) BS01 ADP 1.1.1.37 GO:0003729 ... P32419 30279312
    437850 5zi4:A (2.1) BS01 OAA 1.1.1.37 GO:0003729 ... P32419 30279312
    437851 5zi4:A (2.1) BS02 NAD 1.1.1.37 GO:0003729 ... P32419 30279312
    437852 5zi4:B (2.1) BS01 OAA 1.1.1.37 GO:0003729 ... P32419 30279312
    437853 5zi4:B (2.1) BS02 NAD 1.1.1.37 GO:0003729 ... P32419 30279312
    437854 5zi5:A (2.6) BS01 ZN 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437855 5zi5:B (2.6) BS01 ZN 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437856 5zi6:A (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437857 5zi6:A (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437858 5zi6:B (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437859 5zi6:B (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437860 5zi6:C (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437861 5zi6:C (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437862 5zi6:D (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437863 5zi6:D (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437864 5zi6:E (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437865 5zi6:E (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437866 5zi6:F (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437867 5zi6:F (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437868 5zi6:G (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437869 5zi6:G (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437870 5zi6:H (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437871 5zi6:H (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    437872 5zi7:A (1.86) BS01 GLU 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437873 5zi7:B (1.86) BS01 GLU 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437874 5zi8:A (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    437875 5zi8:B (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    437876 5zia:A (2.603) BS01 peptide N/A N/A N/A 30318466
    437877 5zia:B (2.603) BS01 peptide N/A N/A N/A 30318466
    437878 5zia:D (2.603) BS01 peptide N/A N/A N/A 30318466
    437879 5zia:E (2.603) BS01 peptide N/A N/A N/A 30318466
    437880 5zia:G (2.603) BS01 peptide N/A N/A N/A 30318466
    437881 5zia:H (2.603) BS01 peptide N/A N/A N/A 30318466
    437882 5zia:I (2.603) BS01 peptide N/A N/A N/A 30318466
    437883 5zia:K (2.603) BS01 peptide N/A N/A N/A 30318466
    437884 5zia:L (2.603) BS01 peptide N/A N/A N/A 30318466
    437885 5zia:M (2.603) BS01 peptide N/A N/A N/A 30318466
    437886 5zia:O (2.603) BS01 peptide N/A N/A N/A 30318466
    437887 5zia:P (2.603) BS01 peptide N/A N/A N/A 30318466
    437888 5zic:B (2.1) BS01 Z4Y 2.4.1.155 GO:0030144 ... Q09328 30140003
    437889 5zid:A (3.0) BS01 9EL 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Kd=1.8nM, IC50=2.00nM
    437890 5zid:B (3.0) BS01 9EL 3.4.14.5 GO:0001618 ... P27487 N/A BindingDB: Kd=1.8nM, IC50=2.00nM
    437891 5zie:A (2.0) BS01 ASP 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437892 5zie:B (2.0) BS01 ASP 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    437893 5zii:A (1.3) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    437894 5zii:A (1.3) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    437895 5zil:A (1.29) BS01 RET ? GO:0005216 ... P02945 30177765
    437896 5zim:A (1.25) BS01 RET ? GO:0005216 ... P02945 30177765
    437897 5zin:A (1.27) BS01 RET ? GO:0005216 ... P02945 30177765
    437898 5zio:A (0.98) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437899 5zio:A (0.98) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437900 5zio:A (0.98) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 N/A BindingDB: Kd=14000nM, IC50=50119nM
    437901 5ziq:A (1.5) BS01 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437902 5ziq:A (1.5) BS02 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437903 5ziq:B (1.5) BS01 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437904 5ziq:C (1.5) BS01 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437905 5ziq:D (1.5) BS01 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437906 5ziq:D (1.5) BS02 HEM ? GO:0019825 ... A0A1D1V896 30506636
    437907 5zis:A (3.1) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    437908 5zis:B (3.1) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    437909 5zis:C (3.1) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    437910 5zis:D (3.1) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    437911 5zit:A (3.196) BS01 NDP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... I6TFG7 32353513
    437912 5zix:A (2.57) BS01 NAP 1.1.1.169 GO:0005737 ... Q9HW09 31136784
    437913 5zix:B (2.57) BS01 NAP 1.1.1.169 GO:0005737 ... Q9HW09 31136784
    437914 5zj1:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437915 5zj1:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437916 5zj1:A (0.96) BS03 YT4 3.5.2.6 GO:0008270 ... C7C422 N/A
    437917 5zj2:A (1.1) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437918 5zj2:A (1.1) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437919 5zj2:A (1.1) BS03 MCO 3.5.2.6 GO:0008270 ... C7C422 N/A
    437920 5zj5:A (1.56811) BS01 NAI 2.4.2.- GO:0005576 ... Q9L1E4 30072382
    437921 5zj5:A (1.56811) BS02 GDP 2.4.2.- GO:0005576 ... Q9L1E4 30072382
    437922 5zj5:B (1.56811) BS01 NAI 2.4.2.- GO:0005576 ... Q9L1E4 30072382
    437923 5zj6:A (1.696) BS01 VSE 2.7.10.2 GO:0004672 ... P08631 29793032 BindingDB: IC50=0.426580nM
    437924 5zj6:B (1.696) BS01 VSE 2.7.10.2 GO:0004672 ... P08631 29793032 BindingDB: IC50=0.426580nM
    437925 5zj7:A (0.96) BS01 9DU 3.5.2.6 GO:0008270 ... C7C422 N/A
    437926 5zj7:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437927 5zj7:A (0.96) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437928 5zj8:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437929 5zj8:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437930 5zj8:A (0.96) BS03 9DC 3.5.2.6 GO:0008270 ... C7C422 N/A
    437931 5zj9:A (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437932 5zj9:A (2.6) BS02 9E6 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=36nM
    437933 5zj9:B (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437934 5zj9:B (2.6) BS02 9E6 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=36nM
    437935 5zj9:C (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437936 5zj9:C (2.6) BS02 9E6 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=36nM
    437937 5zj9:D (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437938 5zj9:D (2.6) BS02 9E6 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=36nM
    437939 5zja:A (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437940 5zja:A (2.6) BS02 9E9 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=720nM
    437941 5zja:B (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437942 5zja:B (2.6) BS02 9E9 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=720nM
    437943 5zja:C (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437944 5zja:C (2.6) BS02 9E9 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=720nM
    437945 5zja:D (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P14920 30265959
    437946 5zja:D (2.6) BS02 9E9 1.4.3.3 GO:0003884 ... P14920 30265959 BindingDB: IC50=720nM
    437947 5zjc:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437948 5zjc:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    437949 5zjc:A (0.96) BS03 9EX 3.5.2.6 GO:0008270 ... C7C422 N/A
    437950 5zjd:A (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437951 5zjd:B (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437952 5zjd:C (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437953 5zjd:D (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437954 5zjd:E (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437955 5zjd:F (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437956 5zjd:G (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437957 5zjd:H (2.394) BS01 NAI 1.1.1.27 GO:0003824 ... P00338 31324019
    437958 5zjf:A (2.602) BS01 9G9 1.1.1.27 GO:0003824 ... P00338 31324019
    437959 5zjf:C (2.602) BS01 9G9 1.1.1.27 GO:0003824 ... P00338 31324019
    437960 5zjg:B (1.702) BS01 GLY N/A N/A N/A 30507352
    437961 5zjg:B (1.702) BS02 GLY N/A N/A N/A 30507352
    437962 5zjg:B (1.702) BS03 GLY N/A N/A N/A 30507352
    437963 5zjg:D (1.702) BS01 GLY N/A N/A N/A 30507352
    437964 5zji:1 (3.3) BS01 CHL ? GO:0009416 ... B6SSN3 29880686
    437965 5zji:1 (3.3) BS02 CLA ? GO:0009416 ... B6SSN3 29880686
    437966 5zji:1 (3.3) BS03 CLA ? GO:0009416 ... B6SSN3 29880686
    437967 5zji:1 (3.3) BS04 CLA ? GO:0009416 ... B6SSN3 29880686
    437968 5zji:1 (3.3) BS05 CLA ? GO:0009416 ... B6SSN3 29880686
    437969 5zji:1 (3.3) BS06 CHL ? GO:0009416 ... B6SSN3 29880686
    437970 5zji:1 (3.3) BS07 CLA ? GO:0009416 ... B6SSN3 29880686
    437971 5zji:1 (3.3) BS08 CLA ? GO:0009416 ... B6SSN3 29880686
    437972 5zji:1 (3.3) BS09 CLA ? GO:0009416 ... B6SSN3 29880686
    437973 5zji:1 (3.3) BS10 CLA ? GO:0009416 ... B6SSN3 29880686
    437974 5zji:1 (3.3) BS11 CLA ? GO:0009416 ... B6SSN3 29880686
    437975 5zji:1 (3.3) BS12 CLA ? GO:0009416 ... B6SSN3 29880686
    437976 5zji:1 (3.3) BS13 CLA ? GO:0009416 ... B6SSN3 29880686
    437977 5zji:1 (3.3) BS14 CLA ? GO:0009416 ... B6SSN3 29880686
    437978 5zji:1 (3.3) BS15 CLA ? GO:0009416 ... B6SSN3 29880686
    437979 5zji:2 (3.3) BS01 CHL ? GO:0009416 ... B6T892 29880686
    437980 5zji:2 (3.3) BS02 CLA ? GO:0009416 ... B6T892 29880686
    437981 5zji:2 (3.3) BS03 CLA ? GO:0009416 ... B6T892 29880686
    437982 5zji:2 (3.3) BS04 CLA ? GO:0009416 ... B6T892 29880686
    437983 5zji:2 (3.3) BS05 CHL ? GO:0009416 ... B6T892 29880686
    437984 5zji:2 (3.3) BS06 CHL ? GO:0009416 ... B6T892 29880686
    437985 5zji:2 (3.3) BS07 CHL ? GO:0009416 ... B6T892 29880686
    437986 5zji:2 (3.3) BS08 CLA ? GO:0009416 ... B6T892 29880686
    437987 5zji:2 (3.3) BS09 CLA ? GO:0009416 ... B6T892 29880686
    437988 5zji:2 (3.3) BS10 CLA ? GO:0009416 ... B6T892 29880686
    437989 5zji:2 (3.3) BS11 CLA ? GO:0009416 ... B6T892 29880686
    437990 5zji:2 (3.3) BS12 CLA ? GO:0009416 ... B6T892 29880686
    437991 5zji:2 (3.3) BS13 CHL ? GO:0009416 ... B6T892 29880686
    437992 5zji:2 (3.3) BS14 CLA ? GO:0009416 ... B6T892 29880686
    437993 5zji:2 (3.3) BS15 CLA ? GO:0009416 ... B6T892 29880686
    437994 5zji:3 (3.3) BS01 CHL ? GO:0009507 ... B6SUC4 29880686
    437995 5zji:3 (3.3) BS02 CLA ? GO:0009507 ... B6SUC4 29880686
    437996 5zji:3 (3.3) BS03 CLA ? GO:0009507 ... B6SUC4 29880686
    437997 5zji:3 (3.3) BS04 CLA ? GO:0009507 ... B6SUC4 29880686
    437998 5zji:3 (3.3) BS05 CLA ? GO:0009507 ... B6SUC4 29880686
    437999 5zji:3 (3.3) BS06 CLA ? GO:0009507 ... B6SUC4 29880686
    438000 5zji:3 (3.3) BS07 CLA ? GO:0009507 ... B6SUC4 29880686

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).