SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    438201 5zji:Z (3.3) BS04 CLA ? GO:0009765 ... P12329 29880686
    438202 5zji:Z (3.3) BS05 CLA ? GO:0009765 ... P12329 29880686
    438203 5zji:Z (3.3) BS06 CHL ? GO:0009765 ... P12329 29880686
    438204 5zji:Z (3.3) BS07 CHL ? GO:0009765 ... P12329 29880686
    438205 5zji:Z (3.3) BS08 CHL ? GO:0009765 ... P12329 29880686
    438206 5zji:Z (3.3) BS09 CHL ? GO:0009765 ... P12329 29880686
    438207 5zji:Z (3.3) BS10 CHL ? GO:0009765 ... P12329 29880686
    438208 5zji:Z (3.3) BS11 CLA ? GO:0009765 ... P12329 29880686
    438209 5zji:Z (3.3) BS12 CLA ? GO:0009765 ... P12329 29880686
    438210 5zji:Z (3.3) BS13 CLA ? GO:0009765 ... P12329 29880686
    438211 5zji:Z (3.3) BS14 CLA ? GO:0009765 ... P12329 29880686
    438212 5zji:Z (3.3) BS15 CLA ? GO:0009765 ... P12329 29880686
    438213 5zjk:A (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438214 5zjk:B (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438215 5zjk:C (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438216 5zjk:D (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438217 5zjk:E (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438218 5zjk:F (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438219 5zjk:G (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438220 5zjk:H (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438221 5zjk:I (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438222 5zjk:J (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438223 5zjk:K (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438224 5zjk:L (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438225 5zjk:M (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438226 5zjk:N (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438227 5zjk:O (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438228 5zjk:P (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438229 5zjk:Q (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438230 5zjk:R (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    438231 5zjn:A (2.66) BS01 LRY 5.1.3.9 GO:0003674 ... Q9KR62 29969107
    438232 5zjn:B (2.66) BS01 LRY 5.1.3.9 GO:0003674 ... Q9KR62 29969107
    438233 5zjp:A (2.66) BS01 RFW 5.1.3.9 GO:0003674 ... Q9KR62 29969107
    438234 5zjp:B (2.66) BS01 RFW 5.1.3.9 GO:0003674 ... Q9KR62 29969107
    438235 5zjq:A (2.443) BS01 dna ? GO:0000981 ... P09087 30157419
    438236 5zjq:A (2.443) BS02 dna ? GO:0000981 ... P09087 30157419
    438237 5zjq:B (2.443) BS01 dna ? GO:0000981 ... P40427 30157419
    438238 5zjq:B (2.443) BS02 dna ? GO:0000981 ... P40427 30157419
    438239 5zjr:A (3.03) BS01 dna ? GO:0000981 ... P09087 30157419
    438240 5zjr:A (3.03) BS02 dna ? GO:0000981 ... P09087 30157419
    438241 5zjr:B (3.03) BS01 dna ? GO:0000981 ... P40427 30157419
    438242 5zjr:B (3.03) BS02 dna ? GO:0000981 ... P40427 30157419
    438243 5zjs:A (2.896) BS01 dna ? GO:0000981 ... P09087 30157419
    438244 5zjs:A (2.896) BS02 dna ? GO:0000981 ... P09087 30157419
    438245 5zjs:B (2.896) BS01 dna ? GO:0000981 ... P40427 30157419
    438246 5zjs:B (2.896) BS02 dna ? GO:0000981 ... P40427 30157419
    438247 5zjt:A (2.4) BS01 dna ? GO:0000981 ... P09087 30157419
    438248 5zjt:A (2.4) BS02 dna ? GO:0000981 ... P09087 30157419
    438249 5zjt:B (2.4) BS01 dna ? GO:0000981 ... P40427 30157419
    438250 5zjt:B (2.4) BS02 dna ? GO:0000981 ... P40427 30157419
    438251 5zjt:E (2.4) BS01 dna ? GO:0000981 ... P09087 30157419
    438252 5zjt:E (2.4) BS02 dna ? GO:0000981 ... P09087 30157419
    438253 5zjt:E (2.4) BS03 dna ? GO:0000981 ... P09087 30157419
    438254 5zjv:A (1.82) BS01 LXC 2.7.-.- GO:0016772 ... A0A0R6L508 N/A
    438255 5zjv:A (1.82) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 N/A
    438256 5zjw:A (1.798) BS01 9EO 2.7.11.1 GO:0004672 ... O96013 N/A BindingDB: IC50=25nM
    438257 5zjy:A (1.59) BS01 peptide ? GO:0003723 ... P06730 30881679
    438258 5zjy:A (1.59) BS02 MGP ? GO:0003723 ... P06730 30881679 BindingDB: Ki=28nM
    438259 5zjz:A (1.67) BS01 peptide ? GO:0003723 ... P06730 30881679
    438260 5zjz:A (1.67) BS02 MGT ? GO:0003723 ... P06730 30881679
    438261 5zk1:A (3.05) BS01 dna ? GO:0003677 ... P16220 29733854
    438262 5zk3:A (2.6) BS01 QNB ? GO:0004930 ... P08172
    P0ABE7
    30420692
    438263 5zk4:A (2.03) BS01 9EF 2.3.1.39 GO:0004314 ... Q4U443 29870659
    438264 5zk4:B (2.03) BS01 9EF 2.3.1.39 GO:0004314 ... Q4U443 29870659
    438265 5zk4:D (2.03) BS01 9EF ? GO:0031177 ... Q4U447 29870659
    438266 5zk5:A (2.25) BS01 peptide ? GO:0003723 ... P06730 30881679
    438267 5zk5:A (2.25) BS02 MGT ? GO:0003723 ... P06730 30881679
    438268 5zk6:A (3.15) BS01 ADP 6.3.2.- GO:0003824 ... P0C0U4 N/A
    438269 5zk7:A (2.12) BS01 peptide ? GO:0003723 ... P06730 30881679
    438270 5zk7:A (2.12) BS02 peptide ? GO:0003723 ... P06730 30881679
    438271 5zk7:A (2.12) BS03 MGT ? GO:0003723 ... P06730 30881679
    438272 5zk7:B (2.12) BS01 peptide ? GO:0003723 ... P06730 30881679
    438273 5zk7:B (2.12) BS02 peptide ? GO:0003723 ... P06730 30881679
    438274 5zk7:B (2.12) BS03 MGT ? GO:0003723 ... P06730 30881679
    438275 5zk8:A (3.0) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7
    30420692
    438276 5zk9:A (1.76) BS01 peptide ? GO:0003723 ... P06730 30881679
    438277 5zk9:A (1.76) BS02 MGP ? GO:0003723 ... P06730 30881679 BindingDB: Ki=28nM
    438278 5zkb:A (2.95) BS01 82F ? GO:0004930 ... P08172
    P0ABE7
    30420692
    438279 5zkc:A (2.3) BS01 3C0 ? GO:0004930 ... P08172
    P0ABE7
    30420692 MOAD: Kd=6.4nM
    438280 5zki:A (2.321) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438281 5zki:A (2.321) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438282 5zki:B (2.321) BS01 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438283 5zki:B (2.321) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438284 5zkj:A (2.798) BS01 rna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438285 5zkj:A (2.798) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438286 5zkj:B (2.798) BS01 rna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438287 5zkj:B (2.798) BS02 dna 3.1.30.- GO:0003676 ... Q9Y2C4 30949702
    438288 5zkl:A (1.951) BS01 dna ? GO:0003677 ... Q8DQG2 31713614
    438289 5zko:A (3.05) BS01 dna ? GO:0003677 ... P16220 29733854
    438290 5zko:C (3.05) BS01 dna ? GO:0003677 ... P16220 29733854
    438291 5zko:G (3.05) BS01 dna ? GO:0005634 ... Q3U182 29733854
    438292 5zko:H (3.05) BS01 dna ? GO:0005634 ... Q3U182 29733854
    438293 5zkp:A (2.81) BS01 9ER ? GO:0004930 ... P00323
    P25105
    29808000
    438294 5zkp:A (2.81) BS02 FMN ? GO:0004930 ... P00323
    P25105
    29808000
    438295 5zkq:A (2.9) BS01 9EU 3.2.1.17 GO:0003796 ... P00720
    P25105
    29808000
    438296 5zkq:A (2.9) BS02 ZN 3.2.1.17 GO:0003796 ... P00720
    P25105
    29808000
    438297 5zkq:B (2.9) BS01 9EU 3.2.1.17 GO:0003796 ... P00720
    P25105
    29808000
    438298 5zkq:B (2.9) BS02 ZN 3.2.1.17 GO:0003796 ... P00720
    P25105
    29808000
    438299 5zku:A (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438300 5zku:A (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438301 5zku:B (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438302 5zku:B (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438303 5zku:C (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438304 5zku:C (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438305 5zku:D (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438306 5zku:D (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438307 5zku:E (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438308 5zku:E (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438309 5zku:F (2.32) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438310 5zku:F (2.32) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438311 5zkv:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 N/A
    438312 5zkw:A (1.86) BS01 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438313 5zkw:B (1.86) BS01 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438314 5zkw:C (1.86) BS01 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438315 5zkw:C (1.86) BS02 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438316 5zkw:E (1.86) BS01 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438317 5zkw:F (1.86) BS01 FRU 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438318 5zkz:A (1.3) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    438319 5zkz:A (1.3) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    438320 5zl1:A (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438321 5zl1:A (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438322 5zl1:A (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438323 5zl1:B (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438324 5zl1:B (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438325 5zl1:B (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438326 5zl1:C (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438327 5zl1:C (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438328 5zl1:C (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438329 5zl1:D (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438330 5zl1:D (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438331 5zl1:D (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    438332 5zl4:A (3.0) BS01 FRU 4.2.2.17 N/A B8HDZ1 N/A
    438333 5zl6:A (2.1) BS01 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438334 5zl6:B (2.1) BS01 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438335 5zl6:B (2.1) BS02 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438336 5zl6:C (2.1) BS01 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438337 5zl6:D (2.1) BS01 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438338 5zl6:D (2.1) BS02 PLP 5.1.1.1 GO:0003824 ... Q03Z32 30377839
    438339 5zla:A (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438340 5zla:A (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438341 5zla:B (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438342 5zla:B (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438343 5zla:C (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438344 5zla:C (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438345 5zla:D (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438346 5zla:D (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438347 5zla:E (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438348 5zla:E (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438349 5zla:F (1.7) BS01 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438350 5zla:F (1.7) BS02 9F3 4.2.2.17 GO:0016740 ... B8HDZ1 N/A
    438351 5zlc:A (2.0) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    438352 5zlc:A (2.0) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    438353 5zlc:A (2.0) BS03 DGT 2.7.7.7 GO:0003677 ... Q9NP87 31067051 MOAD: Kd=0.95uM
    438354 5zle:A (2.6) BS01 HEM 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438355 5zle:A (2.6) BS02 HEM 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438356 5zlf:A (2.845) BS01 B29 2.5.1.90 GO:0004659 ... P0AD57 30730737
    438357 5zlf:A (2.845) BS02 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    438358 5zlf:B (2.845) BS01 B29 2.5.1.90 GO:0004659 ... P0AD57 30730737
    438359 5zlg:A (2.8) BS01 HEM 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438360 5zlg:A (2.8) BS02 HEM 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438361 5zlg:A (2.8) BS03 ASC 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438362 5zlg:A (2.8) BS04 ASC 7.2.1.3 GO:0005515 ... Q53TN4 30272000
    438363 5zlh:A (3.4) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    438364 5zlh:B (3.4) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    438365 5zlh:C (3.4) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    438366 5zlh:D (3.4) BS01 MNH 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 29845154
    438367 5zlj:A (1.96) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438368 5zlj:A (1.96) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438369 5zlj:A (1.96) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438370 5zlj:A (1.96) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438371 5zlk:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438372 5zlk:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438373 5zlk:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438374 5zlk:A (2.6) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438375 5zll:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438376 5zll:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438377 5zll:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438378 5zlm:A (1.7) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438379 5zlm:A (1.7) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438380 5zlm:A (1.7) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 29722464
    438381 5zln:A (2.3) BS01 dna ? N/A Q9EQU3 29961984
    438382 5zln:A (2.3) BS02 dna ? N/A Q9EQU3 29961984
    438383 5zln:A (2.3) BS03 dna ? N/A Q9EQU3 29961984
    438384 5zln:A (2.3) BS04 dna ? N/A Q9EQU3 29961984
    438385 5zln:B (2.3) BS01 dna ? N/A Q9EQU3 29961984
    438386 5zln:B (2.3) BS02 dna ? N/A Q9EQU3 29961984
    438387 5zln:B (2.3) BS03 dna ? N/A Q9EQU3 29961984
    438388 5zln:B (2.3) BS04 dna ? N/A Q9EQU3 29961984
    438389 5zlp:A (2.93) BS01 ATP 6.3.1.2 GO:0003824 ... P94845 30076387
    438390 5zlp:B (2.93) BS01 ATP 6.3.1.2 GO:0003824 ... P94845 30076387
    438391 5zlp:C (2.93) BS01 ATP 6.3.1.2 GO:0003824 ... P94845 30076387
    438392 5zlp:D (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    438393 5zlp:E (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    438394 5zlp:F (2.93) BS01 ATP 6.3.1.2 GO:0003824 ... P94845 30076387
    438395 5zlp:G (2.93) BS01 ATP 6.3.1.2 GO:0003824 ... P94845 30076387
    438396 5zlp:H (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    438397 5zlp:I (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    438398 5zlp:I (2.93) BS02 PPQ 6.3.1.2 GO:0003824 ... P94845 30076387
    438399 5zlp:I (2.93) BS03 MG 6.3.1.2 GO:0003824 ... P94845 30076387
    438400 5zlp:J (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).