SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    439001 5zsa:A (2.5) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439002 5zsa:B (2.5) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439003 5zsa:B (2.5) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439004 5zsa:B (2.5) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439005 5zsb:A (2.7) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439006 5zsb:A (2.7) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439007 5zsb:A (2.7) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439008 5zsb:B (2.7) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439009 5zsb:B (2.7) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439010 5zsb:B (2.7) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439011 5zsc:A (2.2) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439012 5zsc:A (2.2) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439013 5zsc:A (2.2) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439014 5zsc:B (2.2) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439015 5zsc:B (2.2) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439016 5zsc:B (2.2) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439017 5zsd:A (2.603) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439018 5zsd:A (2.603) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439019 5zsd:A (2.603) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439020 5zsd:B (2.603) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439021 5zsd:B (2.603) BS02 IDQ ? GO:0002224 ... B3Y653 30566863
    439022 5zsd:B (2.603) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439023 5zse:A (2.201) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439024 5zse:A (2.201) BS02 rna ? GO:0002224 ... B3Y653 30566863
    439025 5zse:A (2.201) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439026 5zse:A (2.201) BS04 IDQ ? GO:0002224 ... B3Y653 30566863
    439027 5zse:B (2.201) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439028 5zse:B (2.201) BS02 rna ? GO:0002224 ... B3Y653 30566863
    439029 5zse:B (2.201) BS03 IDQ ? GO:0002224 ... B3Y653 30566863
    439030 5zse:B (2.201) BS04 IDQ ? GO:0002224 ... B3Y653 30566863
    439031 5zsf:A (2.1) BS01 6T0 ? GO:0002224 ... B3Y653 30566863
    439032 5zsf:A (2.1) BS02 6T0 ? GO:0002224 ... B3Y653 30566863
    439033 5zsf:B (2.1) BS01 6T0 ? GO:0002224 ... B3Y653 30566863
    439034 5zsf:B (2.1) BS02 6T0 ? GO:0002224 ... B3Y653 30566863
    439035 5zsg:A (2.3) BS01 9K3 ? GO:0002224 ... G7NS93 30566863
    439036 5zsg:A (2.3) BS02 9K3 ? GO:0002224 ... G7NS93 30566863
    439037 5zsg:B (2.3) BS01 9K3 ? GO:0002224 ... G7NS93 30566863
    439038 5zsg:B (2.3) BS02 9K3 ? GO:0002224 ... G7NS93 30566863
    439039 5zsh:A (2.6) BS01 L07 ? GO:0002224 ... B3Y653 30566863
    439040 5zsh:A (2.6) BS02 L07 ? GO:0002224 ... B3Y653 30566863
    439041 5zsh:B (2.6) BS01 L07 ? GO:0002224 ... B3Y653 30566863
    439042 5zsh:B (2.6) BS02 L07 ? GO:0002224 ... B3Y653 30566863
    439043 5zsi:A (2.7) BS01 C09 ? GO:0002224 ... B3Y653 30566863
    439044 5zsi:A (2.7) BS02 C09 ? GO:0002224 ... B3Y653 30566863
    439045 5zsi:B (2.7) BS01 C09 ? GO:0002224 ... B3Y653 30566863
    439046 5zsi:B (2.7) BS02 C09 ? GO:0002224 ... B3Y653 30566863
    439047 5zsj:A (2.4) BS01 9JR ? GO:0002224 ... B3Y653 30566863
    439048 5zsj:A (2.4) BS02 9JR ? GO:0002224 ... B3Y653 30566863
    439049 5zsj:B (2.4) BS01 9JR ? GO:0002224 ... B3Y653 30566863
    439050 5zsj:B (2.4) BS02 9JR ? GO:0002224 ... B3Y653 30566863
    439051 5zsk:A (3.24) BS01 PDA 2.8.1.7 GO:0005515 ... O32164 31587510
    439052 5zsl:A (2.3) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439053 5zsl:A (2.3) BS02 9K9 ? GO:0002224 ... B3Y653 30566863
    439054 5zsl:A (2.3) BS03 9K9 ? GO:0002224 ... B3Y653 30566863
    439055 5zsl:B (2.3) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439056 5zsl:B (2.3) BS02 9K9 ? GO:0002224 ... B3Y653 30566863
    439057 5zsl:B (2.3) BS03 9K9 ? GO:0002224 ... B3Y653 30566863
    439058 5zsm:A (2.5) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439059 5zsm:A (2.5) BS02 rna ? GO:0002224 ... B3Y653 30566863
    439060 5zsm:A (2.5) BS03 9K9 ? GO:0002224 ... B3Y653 30566863
    439061 5zsm:A (2.5) BS04 9K9 ? GO:0002224 ... B3Y653 30566863
    439062 5zsm:B (2.5) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439063 5zsm:B (2.5) BS02 rna ? GO:0002224 ... B3Y653 30566863
    439064 5zsm:B (2.5) BS03 9K9 ? GO:0002224 ... B3Y653 30566863
    439065 5zsm:B (2.5) BS04 9K9 ? GO:0002224 ... B3Y653 30566863
    439066 5zsn:A (2.4) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439067 5zsn:A (2.4) BS02 ACK ? GO:0002224 ... B3Y653 30566863
    439068 5zsn:A (2.4) BS03 ACK ? GO:0002224 ... B3Y653 30566863
    439069 5zsn:B (2.4) BS01 rna ? GO:0002224 ... B3Y653 30566863
    439070 5zsn:B (2.4) BS02 ACK ? GO:0002224 ... B3Y653 30566863
    439071 5zsn:B (2.4) BS03 PO4 ? GO:0002224 ... B3Y653 30566863
    439072 5zsn:B (2.4) BS04 ACK ? GO:0002224 ... B3Y653 30566863
    439073 5zso:A (2.7) BS01 C6P 2.8.1.7 GO:0005515 ... O32164 31587510
    439074 5zss:A (3.17) BS01 C6P ? GO:0006534 ... A0A1I5NEH3 N/A
    439075 5zsx:A (2.2) BS01 CA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    439076 5zsx:A (2.2) BS02 FE 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    439077 5zsx:A (2.2) BS03 3FA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    439078 5zsz:A (2.4) BS01 CA 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    439079 5zsz:A (2.4) BS02 FE 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    439080 5zt0:A (3.32043) BS01 peptide 3.1.3.16 GO:0016787 ... P62137 30422398
    439081 5zt0:A (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439082 5zt0:A (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439083 5zt0:B (3.32043) BS01 peptide 3.1.3.16 GO:0016787 ... P62137 30422398
    439084 5zt0:B (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439085 5zt0:B (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439086 5zt0:C (3.32043) BS01 peptide 3.1.3.16 GO:0016787 ... P62137 30422398
    439087 5zt0:C (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439088 5zt0:C (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439089 5zt0:D (3.32043) BS01 peptide 3.1.3.16 GO:0016787 ... P62137 30422398
    439090 5zt0:D (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439091 5zt0:D (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439092 5zt0:E (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439093 5zt0:E (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439094 5zt0:F (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439095 5zt0:F (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    439096 5zt1:A (3.114) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439097 5zt1:A (3.114) BS02 AGS 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439098 5zt1:A (3.114) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439099 5zt1:A (3.114) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439100 5zt1:A (3.114) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439101 5zt1:A (3.114) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439102 5zt1:A (3.114) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439103 5zt1:A (3.114) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439104 5zt1:A (3.114) BS09 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439105 5zt1:A (3.114) BS10 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439106 5zt1:B (3.114) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439107 5zt1:B (3.114) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439108 5zt1:B (3.114) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439109 5zt1:B (3.114) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439110 5zt1:B (3.114) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439111 5zt1:B (3.114) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439112 5zt1:B (3.114) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439113 5zt1:B (3.114) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439114 5zt1:B (3.114) BS09 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439115 5zt1:B (3.114) BS10 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439116 5zt1:B (3.114) BS11 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439117 5zt1:B (3.114) BS12 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439118 5zt1:B (3.114) BS13 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439119 5zt1:B (3.114) BS14 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    439120 5zt7:A (2.94) BS01 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439121 5zt7:A (2.94) BS02 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439122 5zt7:A (2.94) BS03 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439123 5zt7:A (2.94) BS04 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439124 5zt7:B (2.94) BS01 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439125 5zt7:B (2.94) BS02 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439126 5zt7:B (2.94) BS03 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439127 5zt7:B (2.94) BS04 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    439128 5zta:A (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    439129 5zta:B (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    439130 5ztb:A (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439131 5ztb:A (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439132 5ztb:A (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439133 5ztb:A (2.2) BS04 ATP 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439134 5ztb:B (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439135 5ztb:B (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439136 5ztb:B (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439137 5ztb:B (2.2) BS04 ATP 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439138 5ztb:C (2.2) BS01 SF4 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439139 5ztb:C (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439140 5ztb:C (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439141 5ztb:C (2.2) BS04 ATP 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    439142 5ztd:A (1.05) BS01 CU ? GO:0005507 ... P19567 N/A
    439143 5ztd:B (1.05) BS01 CU ? GO:0005507 ... P19567 N/A
    439144 5ztf:A (3.45) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 31018135
    439145 5ztf:A (3.45) BS02 MG 7.2.2.10 GO:0000045 ... P16615 31018135
    439146 5ztf:A (3.45) BS03 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    439147 5ztf:A (3.45) BS04 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    439148 5zth:A (3.24) BS01 rna 2.1.1.- GO:0006396 ... Q97R12 30388185
    439149 5zth:A (3.24) BS02 SAH 2.1.1.- GO:0006396 ... Q97R12 30388185
    439150 5ztk:A (1.75) BS01 CL ? GO:0007602 ... W8VZW3 30455349
    439151 5ztk:A (1.75) BS02 RET ? GO:0007602 ... W8VZW3 30455349
    439152 5ztl:A (1.85) BS01 CL ? GO:0007602 ... W8VZW3 30455349
    439153 5ztl:A (1.85) BS02 RET ? GO:0007602 ... W8VZW3 30455349
    439154 5ztm:A (2.899) BS01 rna 3.6.4.13 GO:0003725 ... P24785 30649456
    439155 5ztm:B (2.899) BS01 rna 3.6.4.13 GO:0003725 ... P24785 30649456
    439156 5ztn:A (2.496) BS01 CUR 2.7.12.1 GO:0004672 ... Q92630 29987021 MOAD: ic50=5nM
    439157 5ztn:B (2.496) BS01 CUR 2.7.12.1 GO:0004672 ... Q92630 29987021 MOAD: ic50=5nM
    439158 5zto:A (2.649) BS01 9JO 2.7.10.1 GO:0004672 ... P00533 N/A BindingDB: IC50=6.8nM
    439159 5zty:A (2.8) BS01 9JU 3.2.1.17 GO:0003796 ... D9IEF7
    P34972
    30639103
    439160 5zu0:A (2.76) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439161 5zu0:B (2.76) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439162 5zu0:C (2.76) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439163 5zu1:A (3.009) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439164 5zu1:B (3.009) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439165 5zu1:C (3.009) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439166 5zu1:D (3.009) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439167 5zu2:A (2.441) BS01 FAD ? GO:0000166 ... Q2UD26 30715389
    439168 5zu2:B (2.441) BS01 FAD ? GO:0000166 ... Q2UD26 30715389
    439169 5zu2:C (2.441) BS01 FAD ? GO:0000166 ... Q2UD26 30715389
    439170 5zu3:A (2.4) BS01 FAY ? GO:0000166 ... Q2UD26 30715389
    439171 5zu3:B (2.4) BS01 FAY ? GO:0000166 ... Q2UD26 30715389
    439172 5zu3:C (2.4) BS01 FAY ? GO:0000166 ... Q2UD26 30715389
    439173 5zu7:A (1.705) BS01 AMP 3.4.19.12 N/A T2B9G2 N/A
    439174 5zu9:A (1.499) BS01 ADP 3.4.19.12 N/A T2B9G2 N/A
    439175 5zua:A (2.471) BS01 ATP 3.4.19.12 N/A T2B9G2 N/A
    439176 5zub:A (1.677) BS01 NAD 3.4.19.12 N/A T2B9G2 N/A
    439177 5zue:A (2.7) BS01 GTP ? GO:0000287 ... P9WN95 29889022
    439178 5zui:A (2.701) BS01 ADP ? GO:0005524 ... G0S4G4 33651974
    439179 5zui:A (2.701) BS02 ADP ? GO:0005524 ... G0S4G4 33651974
    439180 5zuj:A (2.6) BS01 peptide 2.3.2.27 GO:0004842 ... Q9Y4K3 30378729
    439181 5zum:A (1.9) BS01 ZN ? GO:0005737 ... A0A5H1ZR28 N/A
    439182 5zum:B (1.9) BS01 ZN ? GO:0005737 ... A0A5H1ZR28 N/A
    439183 5zun:A (1.35) BS01 9JX 3.1.1.23 GO:0004622 ... Q99685 30251836 MOAD: ic50=0.64nM
    BindingDB: IC50=0.640000nM
    439184 5zuo:A (2.902) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439185 5zuo:B (2.902) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439186 5zuo:C (2.902) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439187 5zuo:D (2.902) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439188 5zup:A (2.9) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439189 5zup:B (2.9) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439190 5zup:C (2.9) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439191 5zup:C (2.9) BS02 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439192 5zup:D (2.9) BS01 dna 3.5.4.37 GO:0003723 ... P55265 30184200
    439193 5zur:A (1.95) BS01 HEM ? GO:0004322 ... A0A3F2YLV4 30198888
    439194 5zur:A (1.95) BS02 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    439195 5zur:B (1.95) BS01 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    439196 5zur:B (1.95) BS02 HEM ? GO:0004322 ... A0A3F2YLV4 30198888
    439197 5zur:C (1.95) BS01 HEM ? GO:0004322 ... A0A3F2YLV4 30198888
    439198 5zur:C (1.95) BS02 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    439199 5zut:A (2.82) BS01 peptide ? GO:0000278 ... P15873 N/A
    439200 5zuu:A (1.95) BS01 rna 3.1.21.- GO:0003723 ... A9LNK9 33515769

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).