SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    439201 5zuu:B (1.95) BS01 rna 3.1.21.- GO:0003723 ... A9LNK9 33515769
    439202 5zuu:C (1.95) BS01 rna 3.1.21.- GO:0003723 ... A9LNK9 33515769
    439203 5zuu:D (1.95) BS01 rna 3.1.21.- GO:0003723 ... A9LNK9 33515769
    439204 5zux:A (-1.00) BS01 dna ? N/A O34857 30252102
    439205 5zux:A (-1.00) BS02 dna ? N/A O34857 30252102
    439206 5zv2:A (2.86) BS01 LEV 2.7.10.1 GO:0004672 ... P11362 29733511
    439207 5zv2:B (2.86) BS01 LEV 2.7.10.1 GO:0004672 ... P11362 29733511
    439208 5zv3:H (2.093) BS01 peptide N/A N/A N/A 29855358
    439209 5zv3:L (2.093) BS01 peptide N/A N/A N/A 29855358
    439210 5zv5:A (2.1) BS01 FUC ? N/A A0A0E3X5I8 30333166
    439211 5zv5:B (2.1) BS01 FUC ? N/A A0A0E3X5I8 30333166
    439212 5zv5:B (2.1) BS02 FUC ? N/A A0A0E3X5I8 30333166
    439213 5zv7:A (1.95) BS01 FUC ? N/A A0A0E3X5I8 30333166
    439214 5zv7:A (1.95) BS02 FUC ? N/A A0A0E3X5I8 30333166
    439215 5zv7:B (1.95) BS01 FUC ? N/A A0A0E3X5I8 30333166
    439216 5zva:A (2.3) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439217 5zva:A (2.3) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439218 5zva:B (2.3) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439219 5zva:B (2.3) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439220 5zvb:A (2.0) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439221 5zvb:A (2.0) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439222 5zvb:B (2.0) BS01 dna 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439223 5zvb:B (2.0) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    439224 5zvc:A (1.8) BS01 GAL ? N/A A0A0D6CBA8 30333166
    439225 5zvc:B (1.8) BS01 GAL ? N/A A0A0D6CBA8 30333166
    439226 5zve:A (2.178) BS01 SAH 2.1.1.- GO:0000049 ... O57712 30541086
    439227 5zve:B (2.178) BS01 SAH 2.1.1.- GO:0000049 ... O57712 30541086
    439228 5zvg:A (2.5) BS01 SAM 2.1.1.- GO:0000049 ... O57712 30541086
    439229 5zvg:B (2.5) BS01 SAM 2.1.1.- GO:0000049 ... O57712 30541086
    439230 5zvh:A (2.5) BS01 SFG 2.1.1.- GO:0000049 ... O57712 30541086
    439231 5zvh:B (2.5) BS01 SFG 2.1.1.- GO:0000049 ... O57712 30541086
    439232 5zvm:A (3.3) BS01 peptide ? GO:0016020 ... P59594 30989115
    439233 5zvm:B (3.3) BS01 peptide ? GO:0016020 ... P59594 30989115
    439234 5zvp:A (1.42) BS01 GDP ? GO:0000148 ... A0A068C8U8 N/A
    439235 5zvp:A (1.42) BS02 MG ? GO:0000148 ... A0A068C8U8 N/A
    439236 5zvq:A (2.5) BS01 ZN ? GO:0003677 ... Q5SHY0 N/A
    439237 5zvr:A (1.93) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    439238 5zvu:A (2.2) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    439239 5zvw:A (2.292) BS01 peptide ? GO:0098689 ... P0DOE3 30323253
    439240 5zvx:A (1.7) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    439241 5zw2:A (1.803) BS01 FAD 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439242 5zw2:A (1.803) BS02 O4B 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439243 5zw2:A (1.803) BS03 O4B 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439244 5zw3:A (2.27) BS01 SAH 2.1.1.- GO:0000287 ... O32036 29982645
    439245 5zw3:A (2.27) BS02 MG 2.1.1.- GO:0000287 ... O32036 29982645
    439246 5zw3:B (2.27) BS01 SAH 2.1.1.- GO:0000287 ... O32036 29982645
    439247 5zw3:B (2.27) BS02 MG 2.1.1.- GO:0000287 ... O32036 29982645
    439248 5zw4:A (1.7) BS01 rna 2.1.1.- GO:0000287 ... O32036 29982645
    439249 5zw4:A (1.7) BS02 SAM 2.1.1.- GO:0000287 ... O32036 29982645
    439250 5zw6:A (2.05) BS01 peptide ? GO:0098689 ... O64094 30323253
    439251 5zw6:B (2.05) BS01 peptide ? GO:0098689 ... O64094 30323253
    439252 5zw7:A (1.3) BS01 FAD 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439253 5zw7:A (1.3) BS02 O4B 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439254 5zw8:A (1.689) BS01 FAD 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439255 5zw8:A (1.689) BS02 O4B 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439256 5zw8:A (1.689) BS03 O4B 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439257 5zw8:A (1.689) BS04 PRO 1.3.8.14 GO:0003995 ... Q5W271 30095206
    439258 5zw9:A (2.6) BS01 PO4 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    439259 5zwa:A (2.45) BS01 ADP 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    439260 5zwa:B (2.45) BS01 PLP 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    439261 5zwb:A (2.2) BS01 ADP 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912 MOAD: Kd=0.000000064M
    439262 5zwb:A (2.2) BS02 MG 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    439263 5zwe:A (2.72) BS01 peptide ? GO:0003677 ... P13053 29936834
    439264 5zwe:A (2.72) BS02 9K0 ? GO:0003677 ... P13053 29936834
    439265 5zwf:A (2.1) BS01 peptide ? GO:0003677 ... P13053 29936834
    439266 5zwf:A (2.1) BS02 9KR ? GO:0003677 ... P13053 29936834
    439267 5zwh:A (2.38) BS01 peptide ? GO:0003677 ... P13053 29936834
    439268 5zwh:A (2.38) BS02 9KX ? GO:0003677 ... P13053 29936834
    439269 5zwh:A (2.38) BS03 9N9 ? GO:0003677 ... P13053 29936834 MOAD: ic50=1.9nM
    439270 5zwi:A (2.4) BS01 peptide ? GO:0003677 ... P13053 29936834
    439271 5zwi:A (2.4) BS02 9KX ? GO:0003677 ... P13053 29936834 MOAD: ic50=2.3nM
    439272 5zwj:A (2.9) BS01 9LL 2.7.10.1 GO:0004672 ... P00533 29802850 BindingDB: IC50=3.0nM
    439273 5zwk:A (2.104) BS01 FBP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439274 5zwk:A (2.104) BS02 AMP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439275 5zwk:A (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439276 5zwk:A (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439277 5zwk:B (2.104) BS01 FBP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439278 5zwk:B (2.104) BS02 AMP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439279 5zwk:B (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439280 5zwk:B (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439281 5zwk:C (2.104) BS01 FBP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439282 5zwk:C (2.104) BS02 AMP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439283 5zwk:C (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439284 5zwk:C (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439285 5zwk:D (2.104) BS01 FBP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439286 5zwk:D (2.104) BS02 AMP 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439287 5zwk:D (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439288 5zwk:D (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    439289 5zwm:1 (3.4) BS01 rna ? GO:0000245 ... P49955 29794219
    439290 5zwm:1 (3.4) BS02 rna ? GO:0000245 ... P49955 29794219
    439291 5zwm:2 (3.4) BS01 rna ? GO:0000245 ... Q02554 29794219
    439292 5zwm:4 (3.4) BS01 rna ? GO:0000398 ... Q99181 29794219
    439293 5zwm:5 (3.4) BS01 rna ? GO:0000245 ... Q06835 29794219
    439294 5zwm:5 (3.4) BS02 ZN ? GO:0000245 ... Q06835 29794219
    439295 5zwm:5 (3.4) BS03 ZN ? GO:0000245 ... Q06835 29794219
    439296 5zwm:5 (3.4) BS04 ZN ? GO:0000245 ... Q06835 29794219
    439297 5zwm:A (3.4) BS01 rna ? GO:0000244 ... P33334 29794219
    439298 5zwm:A (3.4) BS02 rna ? GO:0000244 ... P33334 29794219
    439299 5zwm:A (3.4) BS03 rna ? GO:0000244 ... P33334 29794219
    439300 5zwm:C (3.4) BS01 rna ? GO:0000244 ... P36048 29794219
    439301 5zwm:C (3.4) BS02 GTP ? GO:0000244 ... P36048 29794219
    439302 5zwm:C (3.4) BS03 MG ? GO:0000244 ... P36048 29794219
    439303 5zwm:D (3.4) BS01 rna 3.6.4.13 GO:0000388 ... P32639 29794219
    439304 5zwm:E (3.4) BS01 rna ? GO:0000398 ... Q06819 29794219
    439305 5zwm:J (3.4) BS01 rna ? GO:0000245 ... Q03338 29794219
    439306 5zwm:J (3.4) BS02 rna ? GO:0000245 ... Q03338 29794219
    439307 5zwm:K (3.4) BS01 rna ? GO:0000245 ... P20053 29794219
    439308 5zwm:L (3.4) BS01 rna ? GO:0000244 ... P49704 29794219
    439309 5zwm:L (3.4) BS02 rna ? GO:0000244 ... P49704 29794219
    439310 5zwm:M (3.4) BS01 rna ? GO:0000245 ... P39990 29794219
    439311 5zwm:M (3.4) BS02 rna ? GO:0000245 ... P39990 29794219
    439312 5zwm:N (3.4) BS01 rna ? GO:0000244 ... P19735 29794219
    439313 5zwm:P (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    439314 5zwm:Q (3.4) BS01 rna ? GO:0000243 ... Q02260 29794219
    439315 5zwm:R (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    439316 5zwm:S (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    439317 5zwm:T (3.4) BS01 rna ? GO:0000243 ... Q12330 29794219
    439318 5zwm:U (3.4) BS01 rna ? GO:0000243 ... P54999 29794219
    439319 5zwm:V (3.4) BS01 rna ? GO:0000243 ... P40204 29794219
    439320 5zwm:X (3.4) BS01 rna ? GO:0000245 ... P40565 29794219
    439321 5zwm:X (3.4) BS02 peptide ? GO:0000245 ... P40565 29794219
    439322 5zwm:a (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    439323 5zwm:c (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    439324 5zwm:d (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    439325 5zwm:h (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    439326 5zwm:i (3.4) BS01 rna ? GO:0000243 ... Q12330 29794219
    439327 5zwm:j (3.4) BS01 rna ? GO:0000243 ... P54999 29794219
    439328 5zwm:k (3.4) BS01 rna ? GO:0000243 ... P40204 29794219
    439329 5zwm:l (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    439330 5zwm:m (3.4) BS01 rna ? GO:0000243 ... Q02260 29794219
    439331 5zwm:n (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    439332 5zwm:p (3.4) BS01 rna ? GO:0000398 ... P40567 29794219
    439333 5zwm:u (3.4) BS01 rna ? GO:0000395 ... P19736 29794219
    439334 5zwm:u (3.4) BS02 ZN ? GO:0000395 ... P19736 29794219
    439335 5zwm:u (3.4) BS03 ZN ? GO:0000395 ... P19736 29794219
    439336 5zwm:v (3.4) BS01 rna ? GO:0000245 ... Q07350 29794219
    439337 5zwm:v (3.4) BS02 rna ? GO:0000245 ... Q07350 29794219
    439338 5zwm:v (3.4) BS03 ZN ? GO:0000245 ... Q07350 29794219
    439339 5zwn:Q (3.4) BS01 rna ? GO:0000243 ... Q00916 29794219
    439340 5zwn:R (3.4) BS01 rna ? GO:0000243 ... Q05900 29794219
    439341 5zwn:R (3.4) BS02 rna ? GO:0000243 ... Q05900 29794219
    439342 5zwn:R (3.4) BS03 ZN ? GO:0000243 ... Q05900 29794219
    439343 5zwn:S (3.4) BS01 rna ? GO:0000243 ... P32605 29794219
    439344 5zwn:T (3.4) BS01 rna ? GO:0000243 ... Q03776 29794219
    439345 5zwn:U (3.4) BS01 rna ? GO:0000243 ... P39682 29794219
    439346 5zwn:W (3.4) BS01 rna ? GO:0000243 ... Q03782 29794219
    439347 5zwn:Y (3.4) BS01 rna ? GO:0000243 ... Q07508 29794219
    439348 5zwn:Y (3.4) BS02 rna ? GO:0000243 ... Q07508 29794219
    439349 5zwn:Y (3.4) BS03 ZN ? GO:0000243 ... Q07508 29794219
    439350 5zwn:a (3.4) BS01 rna ? GO:0000243 ... P40018 29794219
    439351 5zwn:b (3.4) BS01 rna ? GO:0000243 ... Q02260 29794219
    439352 5zwn:c (3.4) BS01 rna ? GO:0000243 ... Q06217 29794219
    439353 5zwn:d (3.4) BS01 rna ? GO:0000243 ... P43321 29794219
    439354 5zwn:e (3.4) BS01 rna ? GO:0000243 ... Q12330 29794219
    439355 5zwn:f (3.4) BS01 rna ? GO:0000243 ... P54999 29794219
    439356 5zwn:g (3.4) BS01 rna ? GO:0000243 ... P40204 29794219
    439357 5zwo:1 (3.9) BS01 rna ? GO:0000245 ... P49955 29794219
    439358 5zwo:1 (3.9) BS02 rna ? GO:0000245 ... P49955 29794219
    439359 5zwo:A (3.9) BS01 rna ? GO:0000244 ... P33334 29794219
    439360 5zwo:A (3.9) BS02 rna ? GO:0000244 ... P33334 29794219
    439361 5zwo:A (3.9) BS03 rna ? GO:0000244 ... P33334 29794219
    439362 5zwo:C (3.9) BS01 rna ? GO:0000244 ... P36048 29794219
    439363 5zwo:C (3.9) BS02 GTP ? GO:0000244 ... P36048 29794219
    439364 5zwo:C (3.9) BS03 MG ? GO:0000244 ... P36048 29794219
    439365 5zwo:D (3.9) BS01 rna 3.6.4.13 GO:0000388 ... P32639 29794219
    439366 5zwo:E (3.9) BS01 rna ? GO:0000398 ... Q06819 29794219
    439367 5zwo:J (3.9) BS01 rna ? GO:0000245 ... Q03338 29794219
    439368 5zwo:J (3.9) BS02 rna ? GO:0000245 ... Q03338 29794219
    439369 5zwo:K (3.9) BS01 rna ? GO:0000245 ... P20053 29794219
    439370 5zwo:L (3.9) BS01 rna ? GO:0000244 ... P49704 29794219
    439371 5zwo:L (3.9) BS02 rna ? GO:0000244 ... P49704 29794219
    439372 5zwo:M (3.9) BS01 rna ? GO:0000245 ... P39990 29794219
    439373 5zwo:N (3.9) BS01 rna ? GO:0000244 ... P19735 29794219
    439374 5zwo:P (3.9) BS01 rna ? GO:0000243 ... P40018 29794219
    439375 5zwo:Q (3.9) BS01 rna ? GO:0000243 ... Q02260 29794219
    439376 5zwo:R (3.9) BS01 rna ? GO:0000243 ... Q06217 29794219
    439377 5zwo:S (3.9) BS01 rna ? GO:0000243 ... P43321 29794219
    439378 5zwo:T (3.9) BS01 rna ? GO:0000243 ... Q12330 29794219
    439379 5zwo:U (3.9) BS01 rna ? GO:0000243 ... P54999 29794219
    439380 5zwo:a (3.9) BS01 rna ? GO:0000243 ... P40018 29794219
    439381 5zwo:c (3.9) BS01 rna ? GO:0000243 ... Q06217 29794219
    439382 5zwo:d (3.9) BS01 rna ? GO:0000243 ... P43321 29794219
    439383 5zwo:i (3.9) BS01 rna ? GO:0000243 ... Q12330 29794219
    439384 5zwo:j (3.9) BS01 rna ? GO:0000243 ... P54999 29794219
    439385 5zwo:k (3.9) BS01 rna ? GO:0000243 ... P40204 29794219
    439386 5zwo:m (3.9) BS01 rna ? GO:0000243 ... Q02260 29794219
    439387 5zwo:n (3.9) BS01 rna ? GO:0000243 ... Q06217 29794219
    439388 5zwo:p (3.9) BS01 rna ? GO:0000398 ... P40567 29794219
    439389 5zwo:v (3.9) BS01 rna ? GO:0000245 ... Q07350 29794219
    439390 5zwo:z (3.9) BS01 rna ? GO:0000398 ... P47093 29794219
    439391 5zwp:A (1.4) BS01 GSH 2.5.1.18 GO:0003824 ... P28338 29803675
    439392 5zwp:B (1.4) BS01 GSH 2.5.1.18 GO:0003824 ... P28338 29803675
    439393 5zwq:A (1.797) BS01 9KF N/A N/A N/A N/A
    439394 5zwq:B (1.797) BS01 9KF N/A N/A N/A N/A
    439395 5zwr:A (1.69) BS01 9KL N/A N/A N/A N/A
    439396 5zwr:B (1.69) BS01 9KL N/A N/A N/A N/A
    439397 5zwx:A (1.9) BS01 peptide ? N/A A0A493R6M0 30382101
    439398 5zwx:A (1.9) BS02 peptide ? N/A A0A493R6M0 30382101
    439399 5zwx:B (1.9) BS01 peptide ? N/A A0A493R6M0 30382101
    439400 5zwx:B (1.9) BS02 peptide ? N/A A0A493R6M0 30382101

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).