SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    439601 5zzn:C (2.1) BS12 CLA ? GO:0005737 ... Q8DIF8 30076221
    439602 5zzn:C (2.1) BS13 CLA ? GO:0005737 ... Q8DIF8 30076221
    439603 5zzn:C (2.1) BS14 CLA ? GO:0005737 ... Q8DIF8 30076221
    439604 5zzn:C (2.1) BS15 GOL ? GO:0005737 ... Q8DIF8 30076221
    439605 5zzn:D (2.1) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439606 5zzn:D (2.1) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439607 5zzn:D (2.1) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439608 5zzn:D (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439609 5zzn:D (2.1) BS05 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439610 5zzn:D (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439611 5zzn:D (2.1) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439612 5zzn:D (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439613 5zzn:E (2.1) BS01 HEM ? GO:0005506 ... Q8DIP0 30076221
    439614 5zzn:F (2.1) BS01 HEM ? GO:0009523 ... Q8DIN9 30076221
    439615 5zzn:H (2.1) BS01 CLA ? GO:0009523 ... Q8DJ43 30076221
    439616 5zzn:H (2.1) BS02 CLA ? GO:0009523 ... Q8DJ43 30076221
    439617 5zzn:H (2.1) BS03 CLA ? GO:0009523 ... Q8DJ43 30076221
    439618 5zzn:H (2.1) BS04 RRX ? GO:0009523 ... Q8DJ43 30076221
    439619 5zzn:I (2.1) BS01 CLA ? GO:0005737 ... Q8DJZ6 30076221
    439620 5zzn:J (2.1) BS01 MG ? GO:0009523 ... P59087 30076221
    439621 5zzn:K (2.1) BS01 peptide ? GO:0009523 ... Q9F1K9 30076221
    439622 5zzn:K (2.1) BS02 CLA ? GO:0009523 ... Q9F1K9 30076221
    439623 5zzn:K (2.1) BS03 CLA ? GO:0009523 ... Q9F1K9 30076221
    439624 5zzn:K (2.1) BS04 MG ? GO:0009523 ... Q9F1K9 30076221
    439625 5zzn:O (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    439626 5zzn:V (2.1) BS01 HEC ? GO:0005506 ... P0A386 30076221
    439627 5zzn:Z (2.1) BS01 peptide ? GO:0009523 ... Q8DHJ2 30076221
    439628 5zzn:a (2.1) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 30076221
    439629 5zzn:a (2.1) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 30076221
    439630 5zzn:a (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    439631 5zzn:a (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    439632 5zzn:a (2.1) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 30076221
    439633 5zzn:a (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    439634 5zzn:a (2.1) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    439635 5zzn:a (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    439636 5zzn:a (2.1) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 30076221
    439637 5zzn:b (2.1) BS01 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439638 5zzn:b (2.1) BS02 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439639 5zzn:b (2.1) BS03 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439640 5zzn:b (2.1) BS04 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439641 5zzn:b (2.1) BS05 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439642 5zzn:b (2.1) BS06 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439643 5zzn:b (2.1) BS07 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439644 5zzn:b (2.1) BS08 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439645 5zzn:b (2.1) BS09 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439646 5zzn:b (2.1) BS10 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439647 5zzn:b (2.1) BS11 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439648 5zzn:b (2.1) BS12 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439649 5zzn:b (2.1) BS13 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439650 5zzn:b (2.1) BS14 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439651 5zzn:b (2.1) BS15 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439652 5zzn:b (2.1) BS16 CLA ? GO:0009521 ... Q8DIQ1 30076221
    439653 5zzn:c (2.1) BS01 OEX ? GO:0005737 ... Q8DIF8 30076221
    439654 5zzn:c (2.1) BS02 CA ? GO:0005737 ... Q8DIF8 30076221
    439655 5zzn:c (2.1) BS03 CLA ? GO:0005737 ... Q8DIF8 30076221
    439656 5zzn:c (2.1) BS04 CLA ? GO:0005737 ... Q8DIF8 30076221
    439657 5zzn:c (2.1) BS05 CLA ? GO:0005737 ... Q8DIF8 30076221
    439658 5zzn:c (2.1) BS06 CLA ? GO:0005737 ... Q8DIF8 30076221
    439659 5zzn:c (2.1) BS07 CLA ? GO:0005737 ... Q8DIF8 30076221
    439660 5zzn:c (2.1) BS08 CLA ? GO:0005737 ... Q8DIF8 30076221
    439661 5zzn:c (2.1) BS09 CLA ? GO:0005737 ... Q8DIF8 30076221
    439662 5zzn:c (2.1) BS10 CLA ? GO:0005737 ... Q8DIF8 30076221
    439663 5zzn:c (2.1) BS11 CLA ? GO:0005737 ... Q8DIF8 30076221
    439664 5zzn:c (2.1) BS12 CLA ? GO:0005737 ... Q8DIF8 30076221
    439665 5zzn:c (2.1) BS13 CLA ? GO:0005737 ... Q8DIF8 30076221
    439666 5zzn:c (2.1) BS14 CLA ? GO:0005737 ... Q8DIF8 30076221
    439667 5zzn:c (2.1) BS15 CLA ? GO:0005737 ... Q8DIF8 30076221
    439668 5zzn:c (2.1) BS16 GOL ? GO:0005737 ... Q8DIF8 30076221
    439669 5zzn:d (2.1) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439670 5zzn:d (2.1) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439671 5zzn:d (2.1) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439672 5zzn:d (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439673 5zzn:d (2.1) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439674 5zzn:d (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439675 5zzn:d (2.1) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439676 5zzn:d (2.1) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439677 5zzn:d (2.1) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    439678 5zzn:e (2.1) BS01 HEM ? GO:0005506 ... Q8DIP0 30076221
    439679 5zzn:f (2.1) BS01 HEM ? GO:0009523 ... Q8DIN9 30076221
    439680 5zzn:h (2.1) BS01 CLA ? GO:0009523 ... Q8DJ43 30076221
    439681 5zzn:h (2.1) BS02 CLA ? GO:0009523 ... Q8DJ43 30076221
    439682 5zzn:h (2.1) BS03 CLA ? GO:0009523 ... Q8DJ43 30076221
    439683 5zzn:h (2.1) BS04 RRX ? GO:0009523 ... Q8DJ43 30076221
    439684 5zzn:i (2.1) BS01 CLA ? GO:0005737 ... Q8DJZ6 30076221
    439685 5zzn:j (2.1) BS01 MG ? GO:0009523 ... P59087 30076221
    439686 5zzn:k (2.1) BS01 peptide ? GO:0009523 ... Q9F1K9 30076221
    439687 5zzn:k (2.1) BS02 CLA ? GO:0009523 ... Q9F1K9 30076221
    439688 5zzn:k (2.1) BS03 CLA ? GO:0009523 ... Q9F1K9 30076221
    439689 5zzn:k (2.1) BS04 MG ? GO:0009523 ... Q9F1K9 30076221
    439690 5zzn:o (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    439691 5zzn:v (2.1) BS01 HEC ? GO:0005506 ... P0A386 30076221
    439692 5zzn:x (2.1) BS01 CLA ? GO:0009523 ... Q9F1R6 30076221
    439693 5zzn:x (2.1) BS02 RRX ? GO:0009523 ... Q9F1R6 30076221
    439694 5zzn:z (2.1) BS01 peptide ? GO:0009523 ... Q8DHJ2 30076221
    439695 5zzo:A (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439696 5zzo:B (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439697 5zzo:C (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439698 5zzo:D (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439699 5zzo:E (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439700 5zzo:F (2.5) BS01 FLC ? N/A A0A0D1IHL7 30252448
    439701 5zzp:A (1.39) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439702 5zzq:A (1.32) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439703 5zzq:A (1.32) BS02 HHH 1.1.3.46 GO:0010181 ... O52792 31373572
    439704 5zzr:A (1.31) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439705 5zzr:A (1.31) BS02 SMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439706 5zzr:A (1.31) BS03 SMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439707 5zzs:A (1.398) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439708 5zzt:A (1.35) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 32362037
    439709 5zzt:A (1.35) BS02 9NL 1.1.3.46 GO:0010181 ... O52792 32362037
    439710 5zzu:A (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    439711 5zzu:B (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    439712 5zzu:C (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    439713 5zzw:A (2.6) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439714 5zzw:B (2.6) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439715 5zzw:C (2.6) BS01 SAH 2.1.1.320 N/A Q54S83 30134162
    439716 5zzx:A (1.49) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439717 5zzx:A (1.49) BS02 RMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439718 5zzy:A (1.5) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439719 5zzz:A (1.446) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439720 5zzz:A (1.446) BS02 173 1.1.3.46 GO:0010181 ... O52792 31588923
    439721 621p:A (2.4) BS01 MG 3.6.5.2 GO:0003924 ... P01112 2199064
    439722 621p:A (2.4) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 2199064
    439723 6a00:A (1.59) BS01 MG 1.1.3.46 GO:0010181 ... O52792 31373572
    439724 6a00:A (1.59) BS02 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439725 6a00:A (1.59) BS03 9RW 1.1.3.46 GO:0010181 ... O52792 31373572
    439726 6a01:A (1.868) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 32362037
    439727 6a01:A (1.868) BS02 9NO 1.1.3.46 GO:0010181 ... O52792 32362037
    439728 6a03:A (2.597) BS01 2BA ? GO:0002218 ... B8XX90 31167783
    439729 6a03:B (2.597) BS01 2BA ? GO:0002218 ... B8XX90 31167783
    439730 6a04:A (1.9) BS01 C2E ? GO:0002218 ... B8XX90 31167783
    439731 6a04:B (1.9) BS01 C2E ? GO:0002218 ... B8XX90 31167783 MOAD: Kd~6uM
    439732 6a05:A (2.2) BS01 1YD ? GO:0002218 ... B8XX90 31167783 MOAD: Kd=12.8nM
    439733 6a05:B (2.2) BS01 1YD ? GO:0002218 ... B8XX90 31167783
    439734 6a06:A (1.792) BS01 1SY ? GO:0002218 ... B8XX90 31167783
    439735 6a06:B (1.792) BS01 1SY ? GO:0002218 ... B8XX90 31167783 MOAD: Kd=3.4nM
    439736 6a08:A (1.547) BS01 MG 1.1.3.46 GO:0010181 ... O52792 31588923
    439737 6a08:A (1.547) BS02 FMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439738 6a08:A (1.547) BS03 173 1.1.3.46 GO:0010181 ... O52792 31588923
    439739 6a08:A (1.547) BS04 173 1.1.3.46 GO:0010181 ... O52792 31588923
    439740 6a0a:B (1.502) BS01 peptide N/A N/A N/A 30545625
    439741 6a0a:C (1.502) BS01 peptide N/A N/A N/A 30545625
    439742 6a0b:A (1.65) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 32362037
    439743 6a0b:A (1.65) BS02 9O0 1.1.3.46 GO:0010181 ... O52792 32362037
    439744 6a0c:A (1.501) BS01 peptide N/A N/A N/A 30545625
    439745 6a0c:C (1.501) BS01 peptide N/A N/A N/A 30545625
    439746 6a0d:A (1.65) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439747 6a0d:A (1.65) BS02 9RW 1.1.3.46 GO:0010181 ... O52792 31373572
    439748 6a0d:A (1.65) BS03 9RW 1.1.3.46 GO:0010181 ... O52792 31373572
    439749 6a0f:A (2.384) BS01 peptide 3.5.1.121 GO:0005515 ... Q96AB6 31968674
    439750 6a0f:B (2.384) BS01 peptide 3.5.1.121 GO:0005515 ... Q96AB6 31968674
    439751 6a0g:A (1.8) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439752 6a0g:A (1.8) BS02 HFA 1.1.3.46 GO:0010181 ... O52792 31373572
    439753 6a0g:A (1.8) BS03 HFA 1.1.3.46 GO:0010181 ... O52792 31373572
    439754 6a0h:A (3.185) BS01 peptide 3.5.1.121 GO:0005515 ... Q96AB6 31968674
    439755 6a0h:B (3.185) BS01 peptide 3.5.1.121 GO:0005515 ... Q96AB6 31968674
    439756 6a0j:A (1.6) BS01 GLC ? GO:0005975 ... D2YYE1 30181215
    439757 6a0j:A (1.6) BS02 GLC ? GO:0005975 ... D2YYE1 30181215
    439758 6a0j:A (1.6) BS03 GLC ? GO:0005975 ... D2YYE1 30181215
    439759 6a0j:A (1.6) BS04 GLC ? GO:0005975 ... D2YYE1 30181215
    439760 6a0j:A (1.6) BS05 CA ? GO:0005975 ... D2YYE1 30181215
    439761 6a0k:A (1.94) BS01 GLC ? GO:0005975 ... D2YYE1 30181215
    439762 6a0k:A (1.94) BS02 GLC ? GO:0005975 ... D2YYE1 30181215
    439763 6a0k:A (1.94) BS03 GLC ? GO:0005975 ... D2YYE1 30181215
    439764 6a0k:A (1.94) BS04 BGC ? GO:0005975 ... D2YYE1 30181215
    439765 6a0k:A (1.94) BS05 GLC ? GO:0005975 ... D2YYE1 30181215
    439766 6a0k:B (1.94) BS01 GLC ? GO:0005975 ... D2YYE1 30181215
    439767 6a0k:B (1.94) BS02 GLC ? GO:0005975 ... D2YYE1 30181215
    439768 6a0k:B (1.94) BS03 GLC ? GO:0005975 ... D2YYE1 30181215
    439769 6a0k:B (1.94) BS04 BGC ? GO:0005975 ... D2YYE1 30181215
    439770 6a0k:B (1.94) BS05 GLC ? GO:0005975 ... D2YYE1 30181215
    439771 6a0k:B (1.94) BS06 CA ? GO:0005975 ... D2YYE1 30181215
    439772 6a0l:A (2.1) BS01 GLC ? GO:0005975 ... D2YYE1 30181215
    439773 6a0l:A (2.1) BS02 GLC ? GO:0005975 ... D2YYE1 30181215
    439774 6a0m:A (1.75) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439775 6a0m:A (1.75) BS02 PAC 1.1.3.46 GO:0010181 ... O52792 31373572
    439776 6a0o:A (1.55) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439777 6a0o:A (1.55) BS02 HBX 1.1.3.46 GO:0010181 ... O52792 31373572
    439778 6a0o:A (1.55) BS03 HBX 1.1.3.46 GO:0010181 ... O52792 31373572
    439779 6a0o:A (1.55) BS04 HBX 1.1.3.46 GO:0010181 ... O52792 31373572
    439780 6a0q:B (2.2) BS01 E64 ? N/A Q5ZS97 30071124
    439781 6a0s:A (2.0) BS01 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439782 6a0s:A (2.0) BS02 NDP 1.1.1.3 GO:0000166 ... Q5SL04 30423116 MOAD: Kd=1.6uM
    439783 6a0s:B (2.0) BS01 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439784 6a0s:B (2.0) BS02 NDP 1.1.1.3 GO:0000166 ... Q5SL04 30423116 MOAD: Kd=1.6uM
    439785 6a0t:A (1.87) BS01 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439786 6a0t:A (1.87) BS02 NAP 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439787 6a0t:B (1.87) BS01 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439788 6a0t:B (1.87) BS02 NAP 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439789 6a0u:A (1.93) BS01 NAP 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439790 6a0u:A (1.93) BS02 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439791 6a0u:B (1.93) BS01 NAP 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439792 6a0u:B (1.93) BS02 HSE 1.1.1.3 GO:0000166 ... Q5SL04 30423116
    439793 6a0v:A (1.39) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439794 6a0v:A (1.39) BS02 SMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439795 6a0v:A (1.39) BS03 SMN 1.1.3.46 GO:0010181 ... O52792 31588923
    439796 6a0y:A (1.7) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439797 6a11:A (1.45) BS01 FMN 1.1.3.46 GO:0010181 ... O52792 31373572
    439798 6a11:A (1.45) BS02 PPY 1.1.3.46 GO:0010181 ... O52792 31373572
    439799 6a12:A (2.145) BS01 CA 3.1.1.3 GO:0004806 ... Q8L1V2 30471860
    439800 6a12:A (2.145) BS02 ZN 3.1.1.3 GO:0004806 ... Q8L1V2 30471860

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).