SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 1b85:A (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    4202 1b85:A (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    4203 1b85:B (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    4204 1b85:B (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    4205 1b85:B (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    4206 1b86:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    4207 1b86:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    4208 1b86:B (2.5) BS02 DG2 ? GO:0004601 ... P68871 8377203
    4209 1b86:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    4210 1b86:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    4211 1b87:A (2.7) BS01 ACO ? GO:0016747 ... Q47764 10378269
    4212 1b8a:A (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    4213 1b8a:A (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    4214 1b8a:B (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    4215 1b8a:B (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    4216 1b8c:A (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    4217 1b8c:B (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    4218 1b8d:A (1.9) BS01 PEB ? GO:0009535 ... O36005 10388620
    4219 1b8d:A (1.9) BS02 PEB ? GO:0009535 ... O36005 10388620
    4220 1b8d:A (1.9) BS03 PEB ? GO:0009535 ... O36005 10388620
    4221 1b8d:A (1.9) BS04 PEB ? GO:0009535 ... O36005 10388620
    4222 1b8d:B (1.9) BS01 PEB ? GO:0009535 ... O36004 10388620
    4223 1b8d:B (1.9) BS02 PEB ? GO:0009535 ... O36004 10388620
    4224 1b8d:B (1.9) BS03 PUB ? GO:0009535 ... O36004 10388620
    4225 1b8d:K (1.9) BS01 PEB ? GO:0009535 ... O36005 10388620
    4226 1b8d:K (1.9) BS02 PEB ? GO:0009535 ... O36005 10388620
    4227 1b8d:K (1.9) BS03 PEB ? GO:0009535 ... O36005 10388620
    4228 1b8d:L (1.9) BS01 PEB ? GO:0009535 ... O36004 10388620
    4229 1b8d:L (1.9) BS02 PEB ? GO:0009535 ... O36004 10388620
    4230 1b8d:L (1.9) BS03 PUB ? GO:0009535 ... O36004 10388620
    4231 1b8g:A (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    4232 1b8g:B (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    4233 1b8h:B (3.0) BS01 peptide ? GO:0006260 ... O80164 10535734
    4234 1b8i:A (2.4) BS01 dna ? GO:0000981 ... P83949 10067897
    4235 1b8i:A (2.4) BS02 dna ? GO:0000981 ... P83949 10067897
    4236 1b8i:B (2.4) BS01 dna ? GO:0000981 ... P40427 10067897
    4237 1b8i:B (2.4) BS02 dna ? GO:0000981 ... P40427 10067897
    4238 1b8j:A (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    4239 1b8j:A (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    4240 1b8j:A (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    4241 1b8j:B (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    4242 1b8j:B (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    4243 1b8j:B (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    4244 1b8l:A (1.7) BS01 CA ? GO:0005509 ... P02618 10545326
    4245 1b8n:A (2.0) BS01 IMG 2.4.2.1 GO:0003824 ... P55859 12463747 MOAD: Ki=30pM
    BindingDB: Ki=0.030000nM
    4246 1b8o:A (1.5) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11170405
    4247 1b8o:A (1.5) BS02 IMH 2.4.2.1 GO:0003824 ... P55859 11170405 MOAD: Ki=23pM
    4248 1b8q:A (-1.00) BS01 peptide 1.14.13.39 N/A P29476 10331866
    4249 1b8r:A (1.9) BS01 CA ? GO:0005509 ... P02618 10545326
    4250 1b8r:A (1.9) BS02 CA ? GO:0005509 ... P02618 10545326
    4251 1b8s:A (1.65) BS01 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 10194345
    4252 1b8t:A (-1.00) BS01 ZN ? GO:0001725 ... P67966 10231520
    4253 1b8t:A (-1.00) BS02 ZN ? GO:0001725 ... P67966 10231520
    4254 1b8t:A (-1.00) BS03 ZN ? GO:0001725 ... P67966 10231520
    4255 1b8t:A (-1.00) BS04 ZN ? GO:0001725 ... P67966 10231520
    4256 1b8u:A (2.5) BS01 OAA 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    4257 1b8u:A (2.5) BS02 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    4258 1b8v:A (2.1) BS01 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    4259 1b8y:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    4260 1b8y:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    4261 1b8y:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4262 1b8y:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4263 1b8y:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4264 1b8y:A (2.0) BS06 IN7 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=14nM
    4265 1b90:A (2.5) BS01 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    4266 1b90:A (2.5) BS02 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    4267 1b93:B (1.9) BS01 PO4 4.2.3.3 GO:0005737 ... P0A731 10368300
    4268 1b94:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4269 1b94:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4270 1b94:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    4271 1b94:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4272 1b94:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4273 1b94:B (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    4274 1b95:A (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4275 1b95:A (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4276 1b95:B (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4277 1b95:B (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4278 1b96:A (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4279 1b96:A (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4280 1b96:B (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4281 1b96:B (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4282 1b97:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4283 1b97:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4284 1b97:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4285 1b97:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    4286 1b99:A (2.7) BS01 FUP 2.7.4.6 GO:0004550 ... P22887 10353838
    4287 1b99:C (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    4288 1b99:D (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    4289 1b99:E (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    4290 1b9a:A (2.0) BS01 CA ? GO:0005509 ... P02618 10545326
    4291 1b9a:A (2.0) BS02 CA ? GO:0005509 ... P02618 10545326
    4292 1b9e:B (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    4293 1b9e:D (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    4294 1b9h:A (2.0) BS01 PLP 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    4295 1b9i:A (2.0) BS01 PXG 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    4296 1b9j:A (1.8) BS01 peptide ? GO:0015833 ... P06202 10438628
    4297 1b9o:A (1.15) BS01 CA ? GO:0000139 ... P00709 10080897
    4298 1b9r:A (-1.00) BS01 FES ? GO:0005829 ... P33007 10220356
    4299 1b9s:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    4300 1b9s:A (2.5) BS02 FDI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50>667uM
    BindingDB: IC50=670000nM
    4301 1b9t:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    4302 1b9t:A (2.4) BS02 RAI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=8uM
    BindingDB: IC50=8000nM
    4303 1b9v:A (2.35) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    4304 1b9v:A (2.35) BS02 RA2 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=224uM
    BindingDB: IC50=271000nM
    4305 1b9z:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4306 1b9z:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4307 1b9z:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4308 1b9z:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4309 1b9z:A (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4310 1b9z:A (2.1) BS06 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4311 1b9z:A (2.1) BS07 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    4312 1b9z:A (2.1) BS08 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    4313 1b9z:A (2.1) BS09 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    4314 1ba0:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    4315 1ba1:A (1.7) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    4316 1ba3:A (2.2) BS01 MBR 1.13.12.7 GO:0005777 ... P08659 9788915
    4317 1ba3:A (2.2) BS02 MBR 1.13.12.7 GO:0005777 ... P08659 9788915
    4318 1ba8:B (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    4319 1ba8:B (1.8) BS02 0IT 3.4.21.5 GO:0004252 ... P00734 9724521
    4320 1ba9:A (-1.00) BS01 ZN 1.15.1.1 GO:0000303 ... P00441 9718300
    4321 1ba9:A (-1.00) BS02 CU1 1.15.1.1 GO:0000303 ... P00441 9718300
    4322 1bab:A (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    4323 1bab:B (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    4324 1bab:C (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    4325 1bab:D (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    4326 1baf:L (2.9) BS01 NPP N/A N/A N/A 1920408
    4327 1bag:A (2.5) BS01 BGC 3.2.1.1 GO:0003824 ... P00691 9514750
    4328 1bag:A (2.5) BS02 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    4329 1bag:A (2.5) BS03 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    4330 1bag:A (2.5) BS04 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    4331 1bag:A (2.5) BS05 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    4332 1bag:A (2.5) BS06 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    4333 1bag:A (2.5) BS07 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    4334 1bag:A (2.5) BS08 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    4335 1bai:A (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772 MOAD: Ki=20nM
    4336 1bai:B (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772
    4337 1bap:A (1.75) BS01 ARA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    4338 1bap:A (1.75) BS02 ARB ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    4339 1bav:A (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    4340 1bav:A (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    4341 1bav:B (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    4342 1bav:B (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    4343 1bav:C (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    4344 1bav:C (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    4345 1bav:D (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    4346 1bav:D (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    4347 1baw:A (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    4348 1baw:A (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    4349 1baw:B (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    4350 1baw:B (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    4351 1baw:C (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    4352 1baw:C (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    4353 1bb0:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    4354 1bb0:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    4355 1bb0:B (2.1) BS03 0IV 3.4.21.5 GO:0004252 ... P00734 9724521 BindingDB: IC50=28.8nM
    4356 1bb6:A (2.0) BS01 UMG 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=500000M^-1
    4357 1bb7:A (2.0) BS01 GUM 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=15000M^-1
    4358 1bbb:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    4359 1bbb:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    4360 1bbb:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    4361 1bbb:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    4362 1bbh:A (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    4363 1bbh:B (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    4364 1bbo:A (-1.00) BS01 ZN ? N/A P15822 1567844
    4365 1bbo:A (-1.00) BS02 ZN ? N/A P15822 1567844
    4366 1bbp:A (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    4367 1bbp:B (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    4368 1bbp:C (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    4369 1bbp:D (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    4370 1bbr:E (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    4371 1bbr:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    4372 1bbr:K (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    4373 1bbr:N (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    4374 1bbu:A (2.7) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N3 11041850
    4375 1bbx:C (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    4376 1bbx:C (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    4377 1bbx:D (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    4378 1bbx:D (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    4379 1bbz:A (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    4380 1bbz:A (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    4381 1bbz:C (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    4382 1bbz:E (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    4383 1bbz:E (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    4384 1bbz:G (1.65) BS01 peptide 2.7.10.2 N/A P00519 9698566
    4385 1bbz:G (1.65) BS02 peptide 2.7.10.2 N/A P00519 9698566
    4386 1bc0:A (2.0) BS01 CA ? GO:0001786 ... P14668 9609693
    4387 1bc0:A (2.0) BS02 CA ? GO:0001786 ... P14668 9609693
    4388 1bc0:A (2.0) BS03 CA ? GO:0001786 ... P14668 9609693
    4389 1bc0:A (2.0) BS04 CA ? GO:0001786 ... P14668 9609693
    4390 1bc0:A (2.0) BS05 CA ? GO:0001786 ... P14668 9609693
    4391 1bc1:A (2.05) BS01 CA ? GO:0001786 ... P14668 9609693
    4392 1bc1:A (2.05) BS02 CA ? GO:0001786 ... P14668 9609693
    4393 1bc1:A (2.05) BS03 CA ? GO:0001786 ... P14668 9609693
    4394 1bc1:A (2.05) BS04 CA ? GO:0001786 ... P14668 9609693
    4395 1bc1:A (2.05) BS05 CA ? GO:0001786 ... P14668 9609693
    4396 1bc2:A (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    4397 1bc2:A (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    4398 1bc2:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    4399 1bc2:B (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    4400 1bc3:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).