SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43801 1q7y:4 (3.2) BS01 rna ? GO:0003735 ... P32411 12185246
    43802 1q7y:4 (3.2) BS02 MG ? GO:0003735 ... P32411 12185246
    43803 1q7y:C (3.2) BS01 rna ? GO:0002181 ... P20276 12185246
    43804 1q7y:C (3.2) BS02 MG ? GO:0002181 ... P20276 12185246
    43805 1q7y:D (3.2) BS01 rna ? GO:0003723 ... P20279 12185246
    43806 1q7y:E (3.2) BS01 rna ? GO:0003735 ... P12735 12185246
    43807 1q7y:F (3.2) BS01 rna ? GO:0000049 ... P14124 12185246
    43808 1q7y:F (3.2) BS02 rna ? GO:0000049 ... P14124 12185246
    43809 1q7y:G (3.2) BS01 rna ? GO:0002181 ... P14135 12185246
    43810 1q7y:H (3.2) BS01 rna ? GO:0001682 ... P12743 12185246
    43811 1q7y:J (3.2) BS01 rna ? GO:0003735 ... P60617 12185246
    43812 1q7y:K (3.2) BS01 rna ? GO:0003729 ... P29198 12185246
    43813 1q7y:L (3.2) BS01 rna ? GO:0003735 ... P22450 12185246
    43814 1q7y:M (3.2) BS01 rna ? GO:0003735 ... P12737 12185246
    43815 1q7y:N (3.2) BS01 rna ? GO:0002181 ... P60618 12185246
    43816 1q7y:O (3.2) BS01 rna ? GO:0000027 ... P14123 12185246
    43817 1q7y:O (3.2) BS02 rna ? GO:0000027 ... P14123 12185246
    43818 1q7y:P (3.2) BS01 rna ? GO:0003723 ... P12733 12185246
    43819 1q7y:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12185246
    43820 1q7y:R (3.2) BS01 rna ? GO:0003735 ... P12734 12185246
    43821 1q7y:R (3.2) BS02 rna ? GO:0003735 ... P12734 12185246
    43822 1q7y:S (3.2) BS01 rna ? GO:0002181 ... P10970 12185246
    43823 1q7y:T (3.2) BS01 rna ? GO:0003735 ... P12732 12185246
    43824 1q7y:U (3.2) BS01 rna ? GO:0003723 ... P10972 12185246
    43825 1q7y:U (3.2) BS02 MG ? GO:0003723 ... P10972 12185246
    43826 1q7y:V (3.2) BS01 rna ? GO:0003735 ... P14116 12185246
    43827 1q7y:W (3.2) BS01 rna ? GO:0003735 ... P10971 12185246
    43828 1q7y:X (3.2) BS01 rna ? GO:0000463 ... P14121 12185246
    43829 1q7y:X (3.2) BS02 rna ? GO:0000463 ... P14121 12185246
    43830 1q7y:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12185246
    43831 1q7y:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12185246
    43832 1q7y:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12185246
    43833 1q81:1 (2.95) BS01 rna ? GO:0003735 ... P60619 12185246
    43834 1q81:2 (2.95) BS01 rna ? GO:0003723 ... P32410 12185246
    43835 1q81:3 (2.95) BS01 rna ? GO:0003735 ... P22452 12185246
    43836 1q81:4 (2.95) BS01 rna ? GO:0003735 ... P32411 12185246
    43837 1q81:4 (2.95) BS02 MG ? GO:0003735 ... P32411 12185246
    43838 1q81:C (2.95) BS01 rna ? GO:0002181 ... P20276 12185246
    43839 1q81:C (2.95) BS02 MG ? GO:0002181 ... P20276 12185246
    43840 1q81:D (2.95) BS01 rna ? GO:0003723 ... P20279 12185246
    43841 1q81:E (2.95) BS01 rna ? GO:0003735 ... P12735 12185246
    43842 1q81:F (2.95) BS01 rna ? GO:0000049 ... P14124 12185246
    43843 1q81:F (2.95) BS02 rna ? GO:0000049 ... P14124 12185246
    43844 1q81:G (2.95) BS01 rna ? GO:0002181 ... P14135 12185246
    43845 1q81:H (2.95) BS01 rna ? GO:0001682 ... P12743 12185246
    43846 1q81:J (2.95) BS01 rna ? GO:0003735 ... P60617 12185246
    43847 1q81:K (2.95) BS01 rna ? GO:0003729 ... P29198 12185246
    43848 1q81:L (2.95) BS01 rna ? GO:0003735 ... P22450 12185246
    43849 1q81:M (2.95) BS01 rna ? GO:0003735 ... P12737 12185246
    43850 1q81:N (2.95) BS01 rna ? GO:0002181 ... P60618 12185246
    43851 1q81:O (2.95) BS01 rna ? GO:0000027 ... P14123 12185246
    43852 1q81:O (2.95) BS02 rna ? GO:0000027 ... P14123 12185246
    43853 1q81:P (2.95) BS01 rna ? GO:0003723 ... P12733 12185246
    43854 1q81:Q (2.95) BS01 rna ? GO:0003723 ... P14119 12185246
    43855 1q81:R (2.95) BS01 rna ? GO:0003735 ... P12734 12185246
    43856 1q81:R (2.95) BS02 rna ? GO:0003735 ... P12734 12185246
    43857 1q81:S (2.95) BS01 rna ? GO:0002181 ... P10970 12185246
    43858 1q81:T (2.95) BS01 rna ? GO:0003735 ... P12732 12185246
    43859 1q81:U (2.95) BS01 rna ? GO:0003723 ... P10972 12185246
    43860 1q81:U (2.95) BS02 MG ? GO:0003723 ... P10972 12185246
    43861 1q81:V (2.95) BS01 rna ? GO:0003735 ... P14116 12185246
    43862 1q81:W (2.95) BS01 rna ? GO:0003735 ... P10971 12185246
    43863 1q81:X (2.95) BS01 rna ? GO:0000463 ... P14121 12185246
    43864 1q81:X (2.95) BS02 rna ? GO:0000463 ... P14121 12185246
    43865 1q81:Y (2.95) BS01 rna ? GO:0002181 ... P18138 12185246
    43866 1q81:Z (2.95) BS01 rna ? GO:0000166 ... P12736 12185246
    43867 1q81:Z (2.95) BS02 MG ? GO:0000166 ... P12736 12185246
    43868 1q82:1 (2.98) BS01 rna ? GO:0003735 ... P60619 12185246
    43869 1q82:2 (2.98) BS01 rna ? GO:0003723 ... P32410 12185246
    43870 1q82:3 (2.98) BS01 rna ? GO:0003735 ... P22452 12185246
    43871 1q82:4 (2.98) BS01 rna ? GO:0003735 ... P32411 12185246
    43872 1q82:4 (2.98) BS02 MG ? GO:0003735 ... P32411 12185246
    43873 1q82:C (2.98) BS01 rna ? GO:0002181 ... P20276 12185246
    43874 1q82:C (2.98) BS02 MG ? GO:0002181 ... P20276 12185246
    43875 1q82:D (2.98) BS01 rna ? GO:0003723 ... P20279 12185246
    43876 1q82:E (2.98) BS01 rna ? GO:0003735 ... P12735 12185246
    43877 1q82:F (2.98) BS01 rna ? GO:0000049 ... P14124 12185246
    43878 1q82:F (2.98) BS02 rna ? GO:0000049 ... P14124 12185246
    43879 1q82:G (2.98) BS01 rna ? GO:0002181 ... P14135 12185246
    43880 1q82:H (2.98) BS01 rna ? GO:0001682 ... P12743 12185246
    43881 1q82:J (2.98) BS01 rna ? GO:0003735 ... P60617 12185246
    43882 1q82:K (2.98) BS01 rna ? GO:0003729 ... P29198 12185246
    43883 1q82:L (2.98) BS01 rna ? GO:0003735 ... P22450 12185246
    43884 1q82:M (2.98) BS01 rna ? GO:0003735 ... P12737 12185246
    43885 1q82:N (2.98) BS01 rna ? GO:0002181 ... P60618 12185246
    43886 1q82:O (2.98) BS01 rna ? GO:0000027 ... P14123 12185246
    43887 1q82:O (2.98) BS02 rna ? GO:0000027 ... P14123 12185246
    43888 1q82:P (2.98) BS01 rna ? GO:0003723 ... P12733 12185246
    43889 1q82:Q (2.98) BS01 rna ? GO:0003723 ... P14119 12185246
    43890 1q82:R (2.98) BS01 rna ? GO:0003735 ... P12734 12185246
    43891 1q82:R (2.98) BS02 rna ? GO:0003735 ... P12734 12185246
    43892 1q82:S (2.98) BS01 rna ? GO:0002181 ... P10970 12185246
    43893 1q82:T (2.98) BS01 rna ? GO:0003735 ... P12732 12185246
    43894 1q82:U (2.98) BS01 rna ? GO:0003723 ... P10972 12185246
    43895 1q82:U (2.98) BS02 MG ? GO:0003723 ... P10972 12185246
    43896 1q82:V (2.98) BS01 rna ? GO:0003735 ... P14116 12185246
    43897 1q82:W (2.98) BS01 rna ? GO:0003735 ... P10971 12185246
    43898 1q82:X (2.98) BS01 rna ? GO:0000463 ... P14121 12185246
    43899 1q82:X (2.98) BS02 rna ? GO:0000463 ... P14121 12185246
    43900 1q82:Y (2.98) BS01 rna ? GO:0002181 ... P18138 12185246
    43901 1q82:Z (2.98) BS01 rna ? GO:0000166 ... P12736 12185246
    43902 1q82:Z (2.98) BS02 MG ? GO:0000166 ... P12736 12185246
    43903 1q83:A (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 BindingDB: Ki=0.410nM, Kd=0.00041nM
    43904 1q83:B (2.65) BS01 TZ5 3.1.1.7 GO:0004104 ... P21836 14757816 BindingDB: Ki=0.410nM, Kd=0.00041nM
    43905 1q84:A (2.45) BS01 TZ4 3.1.1.7 GO:0004104 ... P21836 14757816 MOAD: Ki=8900fM
    43906 1q84:B (2.45) BS01 TZ4 3.1.1.7 GO:0004104 ... P21836 14757816 MOAD: Ki=8900fM
    43907 1q86:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12185246
    43908 1q86:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12185246
    43909 1q86:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12185246
    43910 1q86:4 (3.0) BS01 rna ? GO:0003735 ... P32411 12185246
    43911 1q86:4 (3.0) BS02 MG ? GO:0003735 ... P32411 12185246
    43912 1q86:C (3.0) BS01 rna ? GO:0002181 ... P20276 12185246
    43913 1q86:C (3.0) BS02 MG ? GO:0002181 ... P20276 12185246
    43914 1q86:D (3.0) BS01 rna ? GO:0003723 ... P20279 12185246
    43915 1q86:E (3.0) BS01 rna ? GO:0003735 ... P12735 12185246
    43916 1q86:F (3.0) BS01 rna ? GO:0000049 ... P14124 12185246
    43917 1q86:F (3.0) BS02 rna ? GO:0000049 ... P14124 12185246
    43918 1q86:G (3.0) BS01 rna ? GO:0002181 ... P14135 12185246
    43919 1q86:H (3.0) BS01 rna ? GO:0001682 ... P12743 12185246
    43920 1q86:J (3.0) BS01 rna ? GO:0003735 ... P60617 12185246
    43921 1q86:K (3.0) BS01 rna ? GO:0003729 ... P29198 12185246
    43922 1q86:L (3.0) BS01 rna ? GO:0003735 ... P22450 12185246
    43923 1q86:M (3.0) BS01 rna ? GO:0003735 ... P12737 12185246
    43924 1q86:N (3.0) BS01 rna ? GO:0002181 ... P60618 12185246
    43925 1q86:O (3.0) BS01 rna ? GO:0000027 ... P14123 12185246
    43926 1q86:O (3.0) BS02 rna ? GO:0000027 ... P14123 12185246
    43927 1q86:P (3.0) BS01 rna ? GO:0003723 ... P12733 12185246
    43928 1q86:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12185246
    43929 1q86:R (3.0) BS01 rna ? GO:0003735 ... P12734 12185246
    43930 1q86:R (3.0) BS02 rna ? GO:0003735 ... P12734 12185246
    43931 1q86:S (3.0) BS01 rna ? GO:0002181 ... P10970 12185246
    43932 1q86:T (3.0) BS01 rna ? GO:0003735 ... P12732 12185246
    43933 1q86:U (3.0) BS01 rna ? GO:0003723 ... P10972 12185246
    43934 1q86:U (3.0) BS02 MG ? GO:0003723 ... P10972 12185246
    43935 1q86:V (3.0) BS01 rna ? GO:0003735 ... P14116 12185246
    43936 1q86:W (3.0) BS01 rna ? GO:0003735 ... P10971 12185246
    43937 1q86:X (3.0) BS01 rna ? GO:0000463 ... P14121 12185246
    43938 1q86:X (3.0) BS02 rna ? GO:0000463 ... P14121 12185246
    43939 1q86:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12185246
    43940 1q86:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12185246
    43941 1q86:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12185246
    43942 1q8f:A (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    43943 1q8f:B (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    43944 1q8f:C (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    43945 1q8f:D (1.7) BS01 CA 3.2.2.8 GO:0005509 ... P33022 15130467
    43946 1q8h:A (2.0) BS01 CA ? GO:0001649 ... Q8HYY9 14586470
    43947 1q8h:A (2.0) BS02 CA ? GO:0001649 ... Q8HYY9 14586470
    43948 1q8j:A (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    43949 1q8j:B (1.9) BS01 C2F 2.1.1.13 GO:0042558 ... Q9WYA5 14752199
    43950 1q8m:A (2.6) BS01 GSH ? N/A Q9NP99 14656437
    43951 1q8o:A (2.2) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43952 1q8o:A (2.2) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43953 1q8o:A (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43954 1q8o:A (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43955 1q8o:B (2.2) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43956 1q8o:B (2.2) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43957 1q8o:B (2.2) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43958 1q8o:B (2.2) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43959 1q8p:A (1.75) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43960 1q8p:A (1.75) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43961 1q8p:A (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43962 1q8p:A (1.75) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43963 1q8p:B (1.75) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43964 1q8p:B (1.75) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43965 1q8p:B (1.75) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43966 1q8p:B (1.75) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43967 1q8q:A (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43968 1q8q:A (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43969 1q8q:A (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43970 1q8q:A (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43971 1q8q:B (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43972 1q8q:B (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43973 1q8q:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43974 1q8q:B (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43975 1q8s:A (2.05) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    43976 1q8s:A (2.05) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    43977 1q8s:A (2.05) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    43978 1q8s:B (2.05) BS01 MMA ? GO:0030246 ... Q8GSD2 14729339
    43979 1q8s:B (2.05) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43980 1q8s:B (2.05) BS03 MN ? GO:0030246 ... Q8GSD2 14729339
    43981 1q8s:B (2.05) BS04 CA ? GO:0030246 ... Q8GSD2 14729339
    43982 1q8t:A (2.0) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 14656443
    43983 1q8t:A (2.0) BS02 Y27 2.7.11.11 GO:0000287 ... P00517 14656443 MOAD: Kd=17.5uM
    BindingDB: IC50=42000nM
    43984 1q8u:A (1.9) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 14656443
    43985 1q8u:A (1.9) BS02 H52 2.7.11.11 GO:0000287 ... P00517 14656443 MOAD: Kd=1.1uM
    BindingDB: IC50=394nM
    43986 1q8u:A (1.9) BS03 H52 2.7.11.11 GO:0000287 ... P00517 14656443 MOAD: Kd=1.1uM
    BindingDB: IC50=394nM
    43987 1q8v:A (1.85) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    43988 1q8v:A (1.85) BS02 MN ? GO:0030246 ... Q8GSD2 14729339
    43989 1q8v:A (1.85) BS03 CA ? GO:0030246 ... Q8GSD2 14729339
    43990 1q8v:B (1.85) BS01 MAN ? GO:0030246 ... Q8GSD2 14729339
    43991 1q8v:B (1.85) BS02 MAN ? GO:0030246 ... Q8GSD2 14729339
    43992 1q8v:B (1.85) BS03 MAN ? GO:0030246 ... Q8GSD2 14729339
    43993 1q8v:B (1.85) BS04 MN ? GO:0030246 ... Q8GSD2 14729339
    43994 1q8v:B (1.85) BS05 CA ? GO:0030246 ... Q8GSD2 14729339
    43995 1q8w:A (2.2) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 14656443
    43996 1q8w:A (2.2) BS02 M77 2.7.11.11 GO:0000287 ... P00517 14656443 MOAD: Kd=5.7uM
    BindingDB: IC50=1494nM
    43997 1q8y:A (2.05) BS01 MG 2.7.11.1 GO:0004672 ... Q03656 12911299
    43998 1q8y:A (2.05) BS02 ADP 2.7.11.1 GO:0004672 ... Q03656 12911299
    43999 1q8y:B (2.05) BS01 ADE 2.7.11.1 GO:0004672 ... Q03656 12911299
    44000 1q90:A (3.1) BS01 HEC ? GO:0005506 ... P23577 14647374

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).