SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    440001 6a3n:A (2.6) BS02 9Q9 3.1.4.35 GO:0004114 ... O76083 30916555 BindingDB: IC50=8.7nM
    440002 6a3n:B (2.6) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 30916555
    440003 6a3n:B (2.6) BS02 9Q9 3.1.4.35 GO:0004114 ... O76083 30916555 BindingDB: IC50=8.7nM
    440004 6a3t:A (2.511) BS01 9Q0 1.1.3.46 GO:0010181 ... O52792 31588923
    440005 6a3x:A (1.75) BS01 SNE ? GO:0000287 ... A0A0A0RDR2 N/A
    440006 6a3z:A (-1.00) BS01 ZN 2.3.2.27 N/A Q86TM6 N/A
    440007 6a3z:A (-1.00) BS02 ZN 2.3.2.27 N/A Q86TM6 N/A
    440008 6a40:A (1.8) BS01 LGU N/A N/A N/A 31004719
    440009 6a40:A (1.8) BS02 LGU N/A N/A N/A 31004719
    440010 6a40:A (1.8) BS03 LGU N/A N/A N/A 31004719
    440011 6a40:A (1.8) BS04 LGU N/A N/A N/A 31004719
    440012 6a46:A (2.0) BS01 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440013 6a46:A (2.0) BS02 DCM 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440014 6a46:A (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440015 6a46:B (2.0) BS01 DCM 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440016 6a46:B (2.0) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440017 6a46:B (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440018 6a47:A (1.9) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440019 6a47:A (1.9) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440020 6a47:B (1.9) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440021 6a47:B (1.9) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440022 6a48:A (2.0) BS01 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    440023 6a48:A (2.0) BS02 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    440024 6a48:A (2.0) BS03 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    440025 6a48:A (2.0) BS04 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    440026 6a48:A (2.0) BS05 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    440027 6a4b:A (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440028 6a4b:A (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440029 6a4b:A (2.7) BS03 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440030 6a4b:B (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440031 6a4b:B (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440032 6a4b:C (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440033 6a4b:C (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440034 6a4b:D (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440035 6a4b:D (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440036 6a4b:E (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440037 6a4b:E (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440038 6a4b:E (2.7) BS03 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440039 6a4b:F (2.7) BS01 dna 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440040 6a4b:F (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    440041 6a4d:A (2.19) BS01 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440042 6a4d:A (2.19) BS02 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440043 6a4d:A (2.19) BS03 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440044 6a4d:B (2.19) BS01 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440045 6a4d:B (2.19) BS02 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440046 6a4d:B (2.19) BS03 9RC 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440047 6a4e:A (2.45) BS01 rna 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440048 6a4e:A (2.45) BS02 rna 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440049 6a4e:C (2.45) BS01 rna 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440050 6a4e:C (2.45) BS02 rna 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440051 6a4f:A (2.21) BS01 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440052 6a4f:A (2.21) BS02 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440053 6a4f:A (2.21) BS03 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440054 6a4f:B (2.21) BS01 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440055 6a4f:B (2.21) BS02 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440056 6a4f:B (2.21) BS03 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    440057 6a4g:A (2.04) BS01 9Q6 1.1.3.46 GO:0010181 ... O52792 32362037
    440058 6a4h:A (1.99) BS01 9QF 1.1.3.46 GO:0010181 ... O52792 32362037
    440059 6a4i:A (2.65) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 N/A
    440060 6a4i:A (2.65) BS02 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440061 6a4i:A (2.65) BS03 TRP 1.13.11.11 GO:0004833 ... P48775 N/A
    440062 6a4i:A (2.65) BS04 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440063 6a4i:B (2.65) BS01 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440064 6a4i:B (2.65) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 N/A
    440065 6a4i:B (2.65) BS03 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440066 6a4i:B (2.65) BS04 TRP 1.13.11.11 GO:0004833 ... P48775 N/A
    440067 6a4i:C (2.65) BS01 HEM 1.13.11.11 GO:0004833 ... P48775 N/A
    440068 6a4i:C (2.65) BS02 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440069 6a4i:C (2.65) BS03 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440070 6a4i:D (2.65) BS01 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440071 6a4i:D (2.65) BS02 HEM 1.13.11.11 GO:0004833 ... P48775 N/A
    440072 6a4i:D (2.65) BS03 9R9 1.13.11.11 GO:0004833 ... P48775 N/A
    440073 6a4i:D (2.65) BS04 TRP 1.13.11.11 GO:0004833 ... P48775 N/A
    440074 6a4j:A (3.4) BS01 FAD 1.18.1.2 GO:0004324 ... Q2FVP8 30710560
    440075 6a4j:B (3.4) BS01 FAD 1.18.1.2 GO:0004324 ... Q2FVP8 30710560
    440076 6a4j:B (3.4) BS02 FAD 1.18.1.2 GO:0004324 ... Q2FVP8 30710560
    440077 6a4n:A (1.75) BS01 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440078 6a4n:A (1.75) BS02 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440079 6a4n:A (1.75) BS03 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440080 6a4n:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440081 6a4n:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440082 6a4n:A (1.75) BS06 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440083 6a4o:A (1.75) BS01 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440084 6a4o:A (1.75) BS02 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440085 6a4o:A (1.75) BS03 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440086 6a4o:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440087 6a4o:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440088 6a4p:A (1.76) BS01 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440089 6a4p:A (1.76) BS02 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440090 6a4p:A (1.76) BS03 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440091 6a4p:A (1.76) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440092 6a4q:A (1.75) BS01 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440093 6a4q:A (1.75) BS02 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440094 6a4q:A (1.75) BS03 GAI 3.2.1.17 GO:0003796 ... P00698 30412756
    440095 6a4q:A (1.75) BS04 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440096 6a4q:A (1.75) BS05 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440097 6a4q:A (1.75) BS06 CL 3.2.1.17 GO:0003796 ... P00698 30412756
    440098 6a4r:A (1.828) BS01 ASP 3.4.13.21 GO:0005737 ... P36936 30194851
    440099 6a4r:B (1.828) BS01 ASP 3.4.13.21 GO:0005737 ... P36936 30194851
    440100 6a4u:C (1.16) BS01 MG 1.16.3.1 GO:0004322 ... T2B7E1 30099791
    440101 6a4u:D (1.16) BS01 MG 1.16.3.1 GO:0004322 ... T2B7E1 30099791
    440102 6a4x:A (1.63) BS01 FE2 ? GO:0046872 ... A0A124H109 30067334
    440103 6a4y:A (1.92) BS01 HEM 1.11.1.7 GO:0004601 ... P80025 N/A
    440104 6a4y:A (1.92) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    440105 6a4y:A (1.92) BS03 OSM 1.11.1.7 GO:0004601 ... P80025 N/A
    440106 6a4z:A (1.7) BS01 FE2 ? GO:0004462 ... Q4R0L3 30067334
    440107 6a4z:B (1.7) BS01 FE2 ? GO:0004462 ... Q4R0L3 30067334
    440108 6a50:A (1.8) BS01 MG N/A GO:0000287 ... N/A N/A
    440109 6a50:A (1.8) BS02 TPP N/A GO:0000287 ... N/A N/A
    440110 6a50:A (1.8) BS03 MG N/A GO:0000287 ... N/A N/A
    440111 6a50:A (1.8) BS04 TPP N/A GO:0000287 ... N/A N/A
    440112 6a50:B (1.8) BS01 TPP N/A GO:0000287 ... N/A N/A
    440113 6a50:B (1.8) BS02 MG N/A GO:0000287 ... N/A N/A
    440114 6a50:B (1.8) BS03 MG N/A GO:0000287 ... N/A N/A
    440115 6a50:B (1.8) BS04 TPP N/A GO:0000287 ... N/A N/A
    440116 6a52:A (2.0) BS01 FE2 ? GO:0046872 ... A0A3F2YLV5 30067334
    440117 6a52:B (2.0) BS01 FE2 ? GO:0046872 ... A0A3F2YLV5 30067334
    440118 6a53:A (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440119 6a53:B (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440120 6a54:A (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440121 6a54:B (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440122 6a55:A (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440123 6a55:A (1.6) BS02 DQY ? GO:0046872 ... Q4FNM4 30770407
    440124 6a55:B (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    440125 6a55:B (1.6) BS02 DQY ? GO:0046872 ... Q4FNM4 30770407
    440126 6a56:A (1.2) BS01 GAL ? GO:0030246 ... A0A2Z5WLM1 30068923
    440127 6a56:A (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    440128 6a56:A (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    440129 6a56:B (1.2) BS01 GAL ? GO:0030246 ... A0A2Z5WLM1 30068923
    440130 6a56:B (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    440131 6a56:B (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    440132 6a57:A (2.7) BS01 dna 1.14.11.- N/A Q9STM3 32257379
    440133 6a57:A (2.7) BS02 dna 1.14.11.- N/A Q9STM3 32257379
    440134 6a57:A (2.7) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    440135 6a57:A (2.7) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    440136 6a57:A (2.7) BS05 ZN 1.14.11.- N/A Q9STM3 32257379
    440137 6a57:A (2.7) BS06 ZN 1.14.11.- N/A Q9STM3 32257379
    440138 6a58:A (1.57) BS01 ZN 1.14.11.- N/A Q9STM3 32257379
    440139 6a58:A (1.57) BS02 ZN 1.14.11.- N/A Q9STM3 32257379
    440140 6a58:A (1.57) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    440141 6a58:A (1.57) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    440142 6a59:A (1.82) BS01 ZN 1.14.11.- N/A Q9STM3 32257379
    440143 6a59:A (1.82) BS02 ZN 1.14.11.- N/A Q9STM3 32257379
    440144 6a59:A (1.82) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    440145 6a59:A (1.82) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    440146 6a5d:A (1.401) BS01 FUC ? GO:0005515 ... Q9FKT1 31291642
    440147 6a5d:B (1.401) BS01 FUC ? GO:0005515 ... Q9FKT1 31291642
    440148 6a5e:A (2.766) BS01 peptide 2.7.11.1 GO:0004714 ... Q9SCZ4 31291642
    440149 6a5e:B (2.766) BS01 peptide 2.7.11.1 GO:0004714 ... Q9SCZ4 31291642
    440150 6a5e:C (2.766) BS01 peptide ? N/A Q6NLF4 31291642
    440151 6a5e:D (2.766) BS01 peptide ? N/A Q6NLF4 31291642
    440152 6a5k:A (1.9) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440153 6a5k:A (1.9) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440154 6a5k:A (1.9) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440155 6a5k:A (1.9) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440156 6a5k:A (1.9) BS05 SAM 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440157 6a5l:A (5.6) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440158 6a5l:A (5.6) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440159 6a5l:A (5.6) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440160 6a5l:A (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440161 6a5l:A (5.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440162 6a5l:A (5.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440163 6a5l:B (5.6) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440164 6a5l:B (5.6) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440165 6a5l:B (5.6) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440166 6a5l:B (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440167 6a5l:C (5.6) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440168 6a5l:I (5.6) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440169 6a5l:I (5.6) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440170 6a5l:J (5.6) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440171 6a5l:a (5.6) BS01 dna ? GO:0000775 ... P84243 30287617
    440172 6a5l:a (5.6) BS02 dna ? GO:0000775 ... P84243 30287617
    440173 6a5l:b (5.6) BS01 dna ? GO:0000781 ... P62805 30287617
    440174 6a5l:b (5.6) BS02 dna ? GO:0000781 ... P62805 30287617
    440175 6a5l:c (5.6) BS01 dna ? GO:0000786 ... P04908 30287617
    440176 6a5l:c (5.6) BS02 dna ? GO:0000786 ... P04908 30287617
    440177 6a5l:d (5.6) BS01 dna ? GO:0000786 ... P06899 30287617
    440178 6a5l:d (5.6) BS02 dna ? GO:0000786 ... P06899 30287617
    440179 6a5l:e (5.6) BS01 dna ? GO:0000775 ... P84243 30287617
    440180 6a5l:e (5.6) BS02 dna ? GO:0000775 ... P84243 30287617
    440181 6a5l:f (5.6) BS01 dna ? GO:0000781 ... P62805 30287617
    440182 6a5l:f (5.6) BS02 dna ? GO:0000781 ... P62805 30287617
    440183 6a5l:g (5.6) BS01 dna ? GO:0000786 ... P04908 30287617
    440184 6a5l:g (5.6) BS02 dna ? GO:0000786 ... P04908 30287617
    440185 6a5l:h (5.6) BS01 dna ? GO:0000786 ... P06899 30287617
    440186 6a5m:A (2.301) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440187 6a5m:A (2.301) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440188 6a5m:A (2.301) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440189 6a5m:A (2.301) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440190 6a5m:A (2.301) BS05 SAM 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440191 6a5n:A (2.4) BS01 dna 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440192 6a5n:A (2.4) BS02 dna 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440193 6a5n:A (2.4) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440194 6a5n:A (2.4) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440195 6a5n:A (2.4) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    440196 6a5o:A (9.9) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440197 6a5o:A (9.9) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440198 6a5o:A (9.9) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440199 6a5o:A (9.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440200 6a5o:A (9.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).