SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    440201 6a5o:A (9.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440202 6a5o:B (9.9) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440203 6a5o:B (9.9) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440204 6a5o:B (9.9) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440205 6a5o:C (9.9) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440206 6a5o:I (9.9) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440207 6a5o:I (9.9) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440208 6a5o:J (9.9) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440209 6a5o:L (9.9) BS01 ZN ? GO:0001054 ... F2QMI1 30287617
    440210 6a5o:a (9.9) BS01 dna ? GO:0000775 ... P84243 30287617
    440211 6a5o:a (9.9) BS02 dna ? GO:0000775 ... P84243 30287617
    440212 6a5o:b (9.9) BS01 dna ? GO:0000781 ... P62805 30287617
    440213 6a5o:b (9.9) BS02 dna ? GO:0000781 ... P62805 30287617
    440214 6a5o:c (9.9) BS01 dna ? GO:0000786 ... P04908 30287617
    440215 6a5o:c (9.9) BS02 dna ? GO:0000786 ... P04908 30287617
    440216 6a5o:d (9.9) BS01 dna ? GO:0000786 ... P06899 30287617
    440217 6a5o:d (9.9) BS02 dna ? GO:0000786 ... P06899 30287617
    440218 6a5o:e (9.9) BS01 dna ? GO:0000775 ... P84243 30287617
    440219 6a5o:e (9.9) BS02 dna ? GO:0000775 ... P84243 30287617
    440220 6a5o:f (9.9) BS01 dna ? GO:0000781 ... P62805 30287617
    440221 6a5o:f (9.9) BS02 dna ? GO:0000781 ... P62805 30287617
    440222 6a5o:g (9.9) BS01 dna ? GO:0000786 ... P04908 30287617
    440223 6a5o:g (9.9) BS02 dna ? GO:0000786 ... P04908 30287617
    440224 6a5o:h (9.9) BS01 dna ? GO:0000786 ... P06899 30287617
    440225 6a5o:h (9.9) BS02 dna ? GO:0000786 ... P06899 30287617
    440226 6a5p:A (7.0) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440227 6a5p:A (7.0) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440228 6a5p:A (7.0) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440229 6a5p:A (7.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440230 6a5p:A (7.0) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440231 6a5p:A (7.0) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440232 6a5p:B (7.0) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440233 6a5p:B (7.0) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440234 6a5p:B (7.0) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440235 6a5p:C (7.0) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440236 6a5p:E (7.0) BS01 dna ? GO:0001054 ... C4R3P8 30287617
    440237 6a5p:I (7.0) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440238 6a5p:I (7.0) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440239 6a5p:J (7.0) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440240 6a5p:L (7.0) BS01 ZN ? GO:0001054 ... F2QMI1 30287617
    440241 6a5p:a (7.0) BS01 dna ? GO:0000775 ... P84243 30287617
    440242 6a5p:a (7.0) BS02 dna ? GO:0000775 ... P84243 30287617
    440243 6a5p:b (7.0) BS01 dna ? GO:0000781 ... P62805 30287617
    440244 6a5p:b (7.0) BS02 dna ? GO:0000781 ... P62805 30287617
    440245 6a5p:c (7.0) BS01 dna ? GO:0000786 ... P04908 30287617
    440246 6a5p:c (7.0) BS02 dna ? GO:0000786 ... P04908 30287617
    440247 6a5p:d (7.0) BS01 dna ? GO:0000786 ... P06899 30287617
    440248 6a5p:e (7.0) BS01 dna ? GO:0000775 ... P84243 30287617
    440249 6a5p:e (7.0) BS02 dna ? GO:0000775 ... P84243 30287617
    440250 6a5p:f (7.0) BS01 dna ? GO:0000781 ... P62805 30287617
    440251 6a5p:f (7.0) BS02 dna ? GO:0000781 ... P62805 30287617
    440252 6a5p:g (7.0) BS01 dna ? GO:0000786 ... P04908 30287617
    440253 6a5p:g (7.0) BS02 dna ? GO:0000786 ... P04908 30287617
    440254 6a5p:h (7.0) BS01 dna ? GO:0000786 ... P06899 30287617
    440255 6a5p:h (7.0) BS02 dna ? GO:0000786 ... P06899 30287617
    440256 6a5q:A (2.0) BS01 peptide ? GO:0004860 ... P31946 30653408
    440257 6a5q:B (2.0) BS01 peptide ? GO:0004860 ... P31946 30653408
    440258 6a5q:C (2.0) BS01 peptide ? GO:0004860 ... P31946 30653408
    440259 6a5r:A (8.7) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440260 6a5r:A (8.7) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440261 6a5r:A (8.7) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440262 6a5r:A (8.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440263 6a5r:A (8.7) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440264 6a5r:A (8.7) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440265 6a5r:B (8.7) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440266 6a5r:B (8.7) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440267 6a5r:B (8.7) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440268 6a5r:B (8.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440269 6a5r:C (8.7) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440270 6a5r:I (8.7) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440271 6a5r:I (8.7) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440272 6a5r:J (8.7) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440273 6a5r:a (8.7) BS01 dna ? GO:0000775 ... P84243 30287617
    440274 6a5r:a (8.7) BS02 dna ? GO:0000775 ... P84243 30287617
    440275 6a5r:b (8.7) BS01 dna ? GO:0000781 ... P62805 30287617
    440276 6a5r:b (8.7) BS02 dna ? GO:0000781 ... P62805 30287617
    440277 6a5r:c (8.7) BS01 dna ? GO:0000786 ... P04908 30287617
    440278 6a5r:c (8.7) BS02 dna ? GO:0000786 ... P04908 30287617
    440279 6a5r:d (8.7) BS01 dna ? GO:0000786 ... P06899 30287617
    440280 6a5r:e (8.7) BS01 dna ? GO:0000775 ... P84243 30287617
    440281 6a5r:e (8.7) BS02 dna ? GO:0000775 ... P84243 30287617
    440282 6a5r:f (8.7) BS01 dna ? GO:0000781 ... P62805 30287617
    440283 6a5r:f (8.7) BS02 dna ? GO:0000781 ... P62805 30287617
    440284 6a5s:A (2.099) BS01 peptide ? GO:0002842 ... P61981 30653408
    440285 6a5s:B (2.099) BS01 peptide ? GO:0002842 ... P61981 30653408
    440286 6a5s:B (2.099) BS02 MG ? GO:0002842 ... P61981 30653408
    440287 6a5s:D (2.099) BS01 peptide ? GO:0002842 ... P61981 30653408
    440288 6a5s:G (2.099) BS01 peptide ? GO:0002842 ... P61981 30653408
    440289 6a5t:A (6.7) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440290 6a5t:A (6.7) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440291 6a5t:A (6.7) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440292 6a5t:A (6.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440293 6a5t:A (6.7) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440294 6a5t:A (6.7) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440295 6a5t:B (6.7) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440296 6a5t:B (6.7) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440297 6a5t:B (6.7) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440298 6a5t:B (6.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440299 6a5t:C (6.7) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440300 6a5t:I (6.7) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440301 6a5t:I (6.7) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440302 6a5t:J (6.7) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440303 6a5t:a (6.7) BS01 dna ? GO:0000775 ... P84243 30287617
    440304 6a5t:a (6.7) BS02 dna ? GO:0000775 ... P84243 30287617
    440305 6a5t:b (6.7) BS01 dna ? GO:0000781 ... P62805 30287617
    440306 6a5t:b (6.7) BS02 dna ? GO:0000781 ... P62805 30287617
    440307 6a5t:c (6.7) BS01 dna ? GO:0000786 ... P04908 30287617
    440308 6a5t:c (6.7) BS02 dna ? GO:0000786 ... P04908 30287617
    440309 6a5t:d (6.7) BS01 dna ? GO:0000786 ... P06899 30287617
    440310 6a5t:d (6.7) BS02 dna ? GO:0000786 ... P06899 30287617
    440311 6a5t:e (6.7) BS01 dna ? GO:0000775 ... P84243 30287617
    440312 6a5t:e (6.7) BS02 dna ? GO:0000775 ... P84243 30287617
    440313 6a5t:f (6.7) BS01 dna ? GO:0000781 ... P62805 30287617
    440314 6a5u:A (7.6) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440315 6a5u:A (7.6) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440316 6a5u:A (7.6) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440317 6a5u:A (7.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440318 6a5u:A (7.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440319 6a5u:A (7.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    440320 6a5u:B (7.6) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440321 6a5u:B (7.6) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440322 6a5u:B (7.6) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440323 6a5u:B (7.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    440324 6a5u:C (7.6) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    440325 6a5u:I (7.6) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    440326 6a5u:I (7.6) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    440327 6a5u:J (7.6) BS01 ZN ? GO:0000428 ... C4R009 30287617
    440328 6a5u:a (7.6) BS01 dna ? GO:0000775 ... P84243 30287617
    440329 6a5u:a (7.6) BS02 dna ? GO:0000775 ... P84243 30287617
    440330 6a5u:b (7.6) BS01 dna ? GO:0000781 ... P62805 30287617
    440331 6a5u:b (7.6) BS02 dna ? GO:0000781 ... P62805 30287617
    440332 6a5u:c (7.6) BS01 dna ? GO:0000786 ... P04908 30287617
    440333 6a5u:c (7.6) BS02 dna ? GO:0000786 ... P04908 30287617
    440334 6a5u:d (7.6) BS01 dna ? GO:0000786 ... P06899 30287617
    440335 6a5u:d (7.6) BS02 dna ? GO:0000786 ... P06899 30287617
    440336 6a5u:e (7.6) BS01 dna ? GO:0000775 ... P84243 30287617
    440337 6a5u:e (7.6) BS02 dna ? GO:0000775 ... P84243 30287617
    440338 6a5u:f (7.6) BS01 dna ? GO:0000781 ... P62805 30287617
    440339 6a5u:f (7.6) BS02 dna ? GO:0000781 ... P62805 30287617
    440340 6a5u:g (7.6) BS01 dna ? GO:0000786 ... P04908 30287617
    440341 6a5u:g (7.6) BS02 dna ? GO:0000786 ... P04908 30287617
    440342 6a5u:h (7.6) BS01 dna ? GO:0000786 ... P06899 30287617
    440343 6a5w:A (2.88) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440344 6a5w:A (2.88) BS02 9R0 ? GO:0003677 ... Q96RI1 30275017
    440345 6a5w:C (2.88) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440346 6a5w:C (2.88) BS02 9R0 ? GO:0003677 ... Q96RI1 30275017
    440347 6a5x:A (2.6) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440348 6a5x:A (2.6) BS02 9R3 ? GO:0003677 ... Q96RI1 30275017
    440349 6a5y:A (2.1) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440350 6a5y:A (2.1) BS02 9R0 ? GO:0003677 ... Q96RI1 30275017
    440351 6a5y:D (2.1) BS01 peptide ? GO:0003677 ... P19793 30275017
    440352 6a5y:D (2.1) BS02 9CR ? GO:0003677 ... P19793 30275017 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    440353 6a5z:A (2.95) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440354 6a5z:A (2.95) BS02 9R3 ? GO:0003677 ... Q96RI1 30275017
    440355 6a5z:D (2.95) BS01 peptide ? GO:0003677 ... P19793 30275017
    440356 6a5z:D (2.95) BS02 9CR ? GO:0003677 ... P19793 30275017 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    440357 6a5z:H (2.95) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440358 6a5z:H (2.95) BS02 9R3 ? GO:0003677 ... Q96RI1 30275017
    440359 6a5z:L (2.95) BS01 peptide ? GO:0003677 ... P19793 30275017
    440360 6a5z:L (2.95) BS02 9CR ? GO:0003677 ... P19793 30275017 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    440361 6a60:A (3.05) BS01 peptide ? GO:0003677 ... Q96RI1 30275017
    440362 6a60:A (3.05) BS02 064 ? GO:0003677 ... Q96RI1 30275017 BindingDB: EC50=65nM, IC50=20nM
    440363 6a60:D (3.05) BS01 peptide ? GO:0003677 ... P19793 30275017
    440364 6a60:D (3.05) BS02 9CR ? GO:0003677 ... P19793 30275017 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    440365 6a62:A (2.03) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    440366 6a63:A (1.63) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    440367 6a64:A (1.63) BS01 GAL ? GO:0004622 ... Q9UHV8 30413611
    440368 6a6a:A (2.26) BS01 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    440369 6a6a:A (2.26) BS02 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    440370 6a6a:B (2.26) BS01 DAL 3.4.17.- GO:0006508 ... Q47746 30016658
    440371 6a6a:B (2.26) BS02 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    440372 6a6d:A (2.9) BS01 COD 2.7.7.3 GO:0003824 ... B2HUN5 N/A
    440373 6a6e:A (2.09) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440374 6a6e:B (2.09) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440375 6a6e:C (2.09) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440376 6a6e:D (2.09) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440377 6a6f:A (2.1) BS01 ZN N/A GO:0005506 ... N/A 33320434
    440378 6a6f:B (2.1) BS01 ZN N/A GO:0005506 ... N/A 33320434
    440379 6a6g:A (2.49) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440380 6a6g:B (2.49) BS01 PLP N/A GO:0006534 ... N/A 33320434
    440381 6a6g:C (2.49) BS01 ZN N/A GO:0005506 ... N/A 33320434
    440382 6a6g:C (2.49) BS02 ZN N/A GO:0005506 ... N/A 33320434
    440383 6a6g:D (2.49) BS01 ZN N/A GO:0005506 ... N/A 33320434
    440384 6a6h:A (2.31) BS01 peptide ? N/A Q8MHU4 31760318
    440385 6a6j:A (2.255) BS01 rna ? GO:0003676 ... P67809 31399345
    440386 6a6j:A (2.255) BS02 ZN ? GO:0003676 ... P67809 31399345
    440387 6a6j:C (2.255) BS01 rna ? GO:0003676 ... P67809 31399345
    440388 6a6j:C (2.255) BS02 ZN ? GO:0003676 ... P67809 31399345
    440389 6a6k:A (2.9) BS01 9S6 ? N/A P62508 30657313 BindingDB: IC50=35.0nM
    440390 6a6k:B (2.9) BS01 9S6 ? N/A P62508 30657313 BindingDB: IC50=35.0nM
    440391 6a6k:C (2.9) BS01 9S6 ? N/A P62508 30657313 BindingDB: IC50=35.0nM
    440392 6a6l:A (1.78) BS01 rna ? GO:0003676 ... P67809 N/A
    440393 6a6m:A (1.9) BS01 ANP ? GO:0005524 ... M1VAN7 30622258
    440394 6a6m:A (1.9) BS02 MG ? GO:0005524 ... M1VAN7 30622258
    440395 6a6m:A (1.9) BS03 DMU ? GO:0005524 ... M1VAN7 30622258
    440396 6a6p:A (2.1) BS01 9RF ? GO:0003677 ... Q03181 N/A
    440397 6a6p:A (2.1) BS02 B7G ? GO:0003677 ... Q03181 N/A
    440398 6a6p:B (2.1) BS01 9RF ? GO:0003677 ... Q03181 N/A
    440399 6a6p:B (2.1) BS02 B7G ? GO:0003677 ... Q03181 N/A
    440400 6a6q:A (1.67) BS01 HEB 1.11.1.14 GO:0000302 ... P06181 30555531

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).