SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    443001 6az3:J (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IIA7 29150609
    443002 6az3:J (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IIA7 29150609
    443003 6az3:K (2.5) BS01 rna ? GO:0003723 ... Q25278 29150609
    443004 6az3:K (2.5) BS02 rna ? GO:0003723 ... Q25278 29150609
    443005 6az3:L (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IGI9 29150609
    443006 6az3:L (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IGI9 29150609
    443007 6az3:M (2.5) BS01 rna ? GO:0002181 ... E9BMB4 29150609
    443008 6az3:M (2.5) BS02 rna ? GO:0002181 ... E9BMB4 29150609
    443009 6az3:M (2.5) BS03 rna ? GO:0002181 ... E9BMB4 29150609
    443010 6az3:N (2.5) BS01 rna ? GO:0003735 ... A0A3S5H5C4 29150609
    443011 6az3:N (2.5) BS02 rna ? GO:0003735 ... A0A3S5H5C4 29150609
    443012 6az3:N (2.5) BS03 rna ? GO:0003735 ... A0A3S5H5C4 29150609
    443013 6az3:O (2.5) BS01 rna ? GO:0000027 ... A0A3Q8IJC5 29150609
    443014 6az3:O (2.5) BS02 rna ? GO:0000027 ... A0A3Q8IJC5 29150609
    443015 6az3:O (2.5) BS03 rna ? GO:0000027 ... A0A3Q8IJC5 29150609
    443016 6az3:P (2.5) BS01 rna ? GO:0003723 ... A0A3S7XBN1 29150609
    443017 6az3:P (2.5) BS02 rna ? GO:0003723 ... A0A3S7XBN1 29150609
    443018 6az3:P (2.5) BS03 PAR ? GO:0003723 ... A0A3S7XBN1 29150609
    443019 6az3:Q (2.5) BS01 rna ? GO:0003723 ... A0A504XXD2 29150609
    443020 6az3:Q (2.5) BS02 rna ? GO:0003723 ... A0A504XXD2 29150609
    443021 6az3:Q (2.5) BS03 rna ? GO:0003723 ... A0A504XXD2 29150609
    443022 6az3:Q (2.5) BS04 rna ? GO:0003723 ... A0A504XXD2 29150609
    443023 6az3:R (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IT55 29150609
    443024 6az3:R (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IT55 29150609
    443025 6az3:R (2.5) BS03 rna ? GO:0003735 ... A0A3Q8IT55 29150609
    443026 6az3:S (2.5) BS01 rna ? GO:0003735 ... A0A3Q8ICH0 29150609
    443027 6az3:S (2.5) BS02 rna ? GO:0003735 ... A0A3Q8ICH0 29150609
    443028 6az3:S (2.5) BS03 rna ? GO:0003735 ... A0A3Q8ICH0 29150609
    443029 6az3:T (2.5) BS01 rna ? GO:0002181 ... A0A3S7WY02 29150609
    443030 6az3:T (2.5) BS02 rna ? GO:0002181 ... A0A3S7WY02 29150609
    443031 6az3:T (2.5) BS03 rna ? GO:0002181 ... A0A3S7WY02 29150609
    443032 6az3:T (2.5) BS04 rna ? GO:0002181 ... A0A3S7WY02 29150609
    443033 6az3:T (2.5) BS05 rna ? GO:0002181 ... A0A3S7WY02 29150609
    443034 6az3:U (2.5) BS01 rna ? GO:0002181 ... A0A3Q8IJA8 29150609
    443035 6az3:U (2.5) BS02 rna ? GO:0002181 ... A0A3Q8IJA8 29150609
    443036 6az3:U (2.5) BS03 rna ? GO:0002181 ... A0A3Q8IJA8 29150609
    443037 6az3:V (2.5) BS01 rna ? GO:0003735 ... E9B8R9 29150609
    443038 6az3:V (2.5) BS02 rna ? GO:0003735 ... E9B8R9 29150609
    443039 6az3:V (2.5) BS03 rna ? GO:0003735 ... E9B8R9 29150609
    443040 6az3:W (2.5) BS01 rna N/A GO:0003723 ... N/A 29150609
    443041 6az3:W (2.5) BS02 rna N/A GO:0003723 ... N/A 29150609
    443042 6az3:X (2.5) BS01 rna N/A N/A N/A 29150609
    443043 6az3:X (2.5) BS02 rna N/A N/A N/A 29150609
    443044 6az3:X (2.5) BS03 rna N/A N/A N/A 29150609
    443045 6az3:Y (2.5) BS01 rna ? GO:0003735 ... A0A504XEJ0 29150609
    443046 6az3:Y (2.5) BS02 rna ? GO:0003735 ... A0A504XEJ0 29150609
    443047 6az3:Z (2.5) BS01 rna ? GO:0003735 ... A0A3Q8I959 29150609
    443048 6az3:a (2.5) BS01 rna ? GO:0000463 ... E9BIP6 29150609
    443049 6az3:a (2.5) BS02 rna ? GO:0000463 ... E9BIP6 29150609
    443050 6az3:b (2.5) BS01 rna ? GO:0003735 ... A0A504XJE6 29150609
    443051 6az3:b (2.5) BS02 rna ? GO:0003735 ... A0A504XJE6 29150609
    443052 6az3:c (2.5) BS01 rna ? GO:0000463 ... A0A504XVT8 29150609
    443053 6az3:c (2.5) BS02 rna ? GO:0000463 ... A0A504XVT8 29150609
    443054 6az3:d (2.5) BS01 rna ? GO:0003723 ... A0A3Q8IET6 29150609
    443055 6az3:e (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IJL7 29150609
    443056 6az3:e (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IJL7 29150609
    443057 6az3:e (2.5) BS03 rna ? GO:0003735 ... A0A3Q8IJL7 29150609
    443058 6az3:e (2.5) BS04 rna ? GO:0003735 ... A0A3Q8IJL7 29150609
    443059 6az3:f (2.5) BS01 rna ? GO:0003735 ... A0A504XZK6 29150609
    443060 6az3:g (2.5) BS01 rna ? GO:0003735 ... A0A3Q8II82 29150609
    443061 6az3:g (2.5) BS02 rna ? GO:0003735 ... A0A3Q8II82 29150609
    443062 6az3:h (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IHK2 29150609
    443063 6az3:h (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IHK2 29150609
    443064 6az3:h (2.5) BS03 rna ? GO:0003735 ... A0A3Q8IHK2 29150609
    443065 6az3:i (2.5) BS01 rna ? GO:0003735 ... A0A3Q8IDW6 29150609
    443066 6az3:i (2.5) BS02 rna ? GO:0003735 ... A0A3Q8IDW6 29150609
    443067 6az3:j (2.5) BS01 rna ? GO:0003723 ... P62885 29150609
    443068 6az3:j (2.5) BS02 rna ? GO:0003723 ... P62885 29150609
    443069 6az3:j (2.5) BS03 rna ? GO:0003723 ... P62885 29150609
    443070 6az3:k (2.5) BS01 rna ? GO:0003735 ... A0A504WZU0 29150609
    443071 6az3:k (2.5) BS02 rna ? GO:0003735 ... A0A504WZU0 29150609
    443072 6az3:k (2.5) BS03 rna ? GO:0003735 ... A0A504WZU0 29150609
    443073 6az3:l (2.5) BS01 rna ? GO:0003735 ... E9BCX6 29150609
    443074 6az3:l (2.5) BS02 rna ? GO:0003735 ... E9BCX6 29150609
    443075 6az3:l (2.5) BS03 rna ? GO:0003735 ... E9BCX6 29150609
    443076 6az3:m (2.5) BS01 rna ? GO:0003735 ... A0A3Q8ISR1 29150609
    443077 6az3:m (2.5) BS02 rna ? GO:0003735 ... A0A3Q8ISR1 29150609
    443078 6az3:m (2.5) BS03 rna ? GO:0003735 ... A0A3Q8ISR1 29150609
    443079 6az3:o (2.5) BS01 rna ? GO:0003735 ... E9BFK4 29150609
    443080 6az3:o (2.5) BS02 rna ? GO:0003735 ... E9BFK4 29150609
    443081 6az3:o (2.5) BS03 rna ? GO:0003735 ... E9BFK4 29150609
    443082 6az3:p (2.5) BS01 rna ? GO:0003735 ... E9BBL5 29150609
    443083 6az3:p (2.5) BS02 rna ? GO:0003735 ... E9BBL5 29150609
    443084 6aze:A (2.451) BS01 peptide ? GO:0006357 ... Q12830 N/A
    443085 6aze:A (2.451) BS02 ZN ? GO:0006357 ... Q12830 N/A
    443086 6aze:A (2.451) BS03 ZN ? GO:0006357 ... Q12830 N/A
    443087 6azj:A (2.53) BS01 C5V 2.4.2.12 GO:0005125 ... P43490 N/A BindingDB: IC50=<1.000000nM
    443088 6azj:A (2.53) BS02 C5V 2.4.2.12 GO:0005125 ... P43490 N/A BindingDB: IC50=<1.000000nM
    443089 6azj:B (2.53) BS01 C5V 2.4.2.12 GO:0005125 ... P43490 N/A BindingDB: IC50=<1.000000nM
    443090 6azk:A (2.477) BS01 peptide ? GO:0002250 ... P01834 29199990
    443091 6azk:B (2.477) BS01 peptide ? N/A S6B291 29199990
    443092 6azk:C (2.477) BS01 peptide ? GO:0002250 ... P01834 29199990
    443093 6azk:D (2.477) BS01 peptide ? N/A S6B291 29199990
    443094 6azl:A (2.482) BS01 peptide ? GO:0002250 ... P01834 29199990
    443095 6azl:B (2.482) BS01 peptide ? N/A S6B291 29199990
    443096 6azl:C (2.482) BS01 peptide ? GO:0002250 ... P01834 29199990
    443097 6azl:D (2.482) BS01 peptide ? N/A S6B291 29199990
    443098 6azm:A (1.6) BS01 peptide N/A N/A N/A 29195810
    443099 6azm:B (1.6) BS01 peptide N/A N/A N/A 29195810
    443100 6azm:C (1.6) BS01 peptide N/A N/A N/A 29195810
    443101 6azm:D (1.6) BS01 peptide N/A N/A N/A 29195810
    443102 6azp:A (2.291) BS01 CA 1.11.2.2 GO:0004601 ... P05164 29306874
    443103 6azq:A (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443104 6azq:B (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443105 6azq:C (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443106 6azq:D (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443107 6azq:E (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443108 6azq:G (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443109 6azq:G (2.22) BS02 CA 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443110 6azq:H (2.22) BS01 C5J 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443111 6azr:A (3.628) BS01 ANP 2.7.13.3 GO:0000155 ... Q9WZV7 29235472
    443112 6azr:B (3.628) BS01 MG ? GO:0000160 ... Q9WYT9 29235472
    443113 6azr:C (3.628) BS01 ANP 2.7.13.3 GO:0000155 ... Q9WZV7 29235472
    443114 6azr:D (3.628) BS01 MG ? GO:0000160 ... Q9WYT9 29235472
    443115 6azs:B (1.59) BS01 C5S 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443116 6azs:D (1.59) BS01 C5S 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    443117 6azt:A (1.8) BS01 peptide 3.4.22.34 GO:0004197 ... A0A251RPF5 29384475
    443118 6azu:A (2.822) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 29531094
    443119 6azu:B (2.822) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 29531094
    443120 6azu:C (2.822) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 29531094
    443121 6azu:D (2.822) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 29531094
    443122 6azv:A (2.755) BS01 C4V 1.13.11.52 GO:0002376 ... P14902 29531094
    443123 6azv:B (2.755) BS01 C4V 1.13.11.52 GO:0002376 ... P14902 29531094
    443124 6azv:C (2.755) BS01 C4V 1.13.11.52 GO:0002376 ... P14902 29531094
    443125 6azv:D (2.755) BS01 C4V 1.13.11.52 GO:0002376 ... P14902 29531094
    443126 6azw:A (2.78) BS01 C51 1.13.11.52 GO:0002376 ... P14902 29531094
    443127 6azw:B (2.78) BS01 C51 1.13.11.52 GO:0002376 ... P14902 29531094
    443128 6azy:A (2.7) BS01 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    443129 6azy:A (2.7) BS02 ADP ? GO:0005524 ... A0A452CSQ7 30595457
    443130 6b00:A (0.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29139171
    443131 6b03:A (2.7) BS01 peptide ? GO:0004222 ... Q6D8U3 30071011
    443132 6b04:A (1.83) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443133 6b04:A (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443134 6b04:A (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443135 6b04:B (1.83) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443136 6b04:B (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443137 6b04:B (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443138 6b04:C (1.83) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443139 6b04:C (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443140 6b04:C (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443141 6b05:A (1.9) BS01 peptide ? GO:0046872 ... Q6D8U3 30071011
    443142 6b05:A (1.9) BS02 ZN ? GO:0046872 ... Q6D8U3 30071011
    443143 6b06:A (2.6) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443144 6b06:A (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443145 6b06:A (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443146 6b06:A (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443147 6b06:B (2.6) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443148 6b06:B (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443149 6b06:B (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443150 6b06:B (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443151 6b06:C (2.6) BS01 C6J 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443152 6b06:C (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443153 6b06:C (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443154 6b06:C (2.6) BS04 IPE 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443155 6b07:A (1.98) BS01 C6M 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443156 6b07:A (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443157 6b07:A (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443158 6b07:B (1.98) BS01 C6M 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443159 6b07:B (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443160 6b07:B (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443161 6b07:C (1.98) BS01 C6M 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443162 6b07:C (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443163 6b07:C (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    443164 6b09:A (3.2) BS01 C7G 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    443165 6b09:A (3.2) BS02 MG 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    443166 6b09:A (3.2) BS03 C7G 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    443167 6b09:B (3.2) BS01 C7G 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    443168 6b09:B (3.2) BS02 MG 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    443169 6b0b:A (3.28006) BS01 rna 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443170 6b0b:A (3.28006) BS02 rna 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443171 6b0b:A (3.28006) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443172 6b0b:E (3.28006) BS01 rna 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443173 6b0b:E (3.28006) BS02 rna 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443174 6b0b:E (3.28006) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    443175 6b0c:A (3.51) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29695795
    443176 6b0c:B (3.51) BS01 GDP ? GO:0000226 ... P02554 29695795
    443177 6b0c:C (3.51) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29695795
    443178 6b0c:D (3.51) BS01 GDP ? GO:0000226 ... P02554 29695795
    443179 6b0c:D (3.51) BS02 TA1 ? GO:0000226 ... P02554 29695795 BindingDB: EC50=520nM
    443180 6b0c:K (3.51) BS01 MG ? GO:0003777 ... Q960Z0 29695795
    443181 6b0c:K (3.51) BS02 ANP ? GO:0003777 ... Q960Z0 29695795
    443182 6b0f:A (2.86) BS01 C6V ? N/A P03372 29562737 BindingDB: IC50=6.0nM
    443183 6b0f:B (2.86) BS01 C6V ? N/A P03372 29562737 BindingDB: IC50=6.0nM
    443184 6b0i:A (3.78) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29695795
    443185 6b0i:B (3.78) BS01 GDP ? GO:0000226 ... P02554 29695795
    443186 6b0i:B (3.78) BS02 TA1 ? GO:0000226 ... P02554 29695795 BindingDB: EC50=520nM
    443187 6b0j:A (2.5) BS01 G4S N/A N/A N/A 29681469
    443188 6b0j:A (2.5) BS02 DGS N/A N/A N/A 29681469
    443189 6b0j:A (2.5) BS03 G4S N/A N/A N/A 29681469
    443190 6b0j:A (2.5) BS04 G4S N/A N/A N/A 29681469
    443191 6b0j:A (2.5) BS05 CA N/A N/A N/A 29681469
    443192 6b0j:A (2.5) BS06 9RN N/A N/A N/A 29681469
    443193 6b0j:B (2.5) BS01 G4S N/A N/A N/A 29681469
    443194 6b0j:B (2.5) BS02 DGS N/A N/A N/A 29681469
    443195 6b0j:B (2.5) BS03 G4S N/A N/A N/A 29681469
    443196 6b0j:B (2.5) BS04 G4S N/A N/A N/A 29681469
    443197 6b0j:B (2.5) BS05 CA N/A N/A N/A 29681469
    443198 6b0j:B (2.5) BS06 9RN N/A N/A N/A 29681469
    443199 6b0j:C (2.5) BS01 G4S N/A N/A N/A 29681469
    443200 6b0j:C (2.5) BS02 DGS N/A N/A N/A 29681469

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).