SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    444601 6bbx:B (2.2) BS02 D77 ? GO:0046872 ... A0A125SA29 29937405
    444602 6bbz:A (1.9) BS01 SIS 2.3.1.81 GO:0016746 ... Q47030 29632894
    444603 6bc0:F (2.198) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29196061
    444604 6bc0:F (2.198) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29196061
    444605 6bc1:A (2.9) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 29196061
    444606 6bc1:A (2.9) BS02 MG 3.6.5.2 GO:0001764 ... P63000 29196061
    444607 6bc1:B (2.9) BS01 GSP 3.6.5.2 GO:0001764 ... P63000 29196061
    444608 6bc1:B (2.9) BS02 MG 3.6.5.2 GO:0001764 ... P63000 29196061
    444609 6bc2:A (2.195) BS01 DVM 2.3.1.81 GO:0008080 ... Q47030 29632894
    444610 6bc3:A (2.047) BS01 COA 2.3.1.81 GO:0008080 ... Q47030 29632894
    444611 6bc3:A (2.047) BS02 SIS 2.3.1.81 GO:0008080 ... Q47030 29632894
    444612 6bc4:A (2.049) BS01 ACO 2.3.1.81 GO:0008080 ... Q47030 29632894
    444613 6bc5:A (2.2) BS01 COA 2.3.1.81 GO:0008080 ... Q47030 29632894
    444614 6bc7:A (1.8) BS01 SIS 2.3.1.81 GO:0008080 ... Q47030 29632894
    444615 6bc8:A (1.68) BS01 peptide ? GO:0000122 ... Q9UI95 30111544
    444616 6bc9:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29429876
    444617 6bc9:A (1.8) BS02 ETS 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29429876 BindingDB: Ki=9nM, IC50=26.61nM, Kd=0.043000nM
    444618 6bca:C (1.995) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    444619 6bca:C (1.995) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    444620 6bca:F (1.995) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    444621 6bca:F (1.995) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    444622 6bcb:F (1.401) BS01 GSP 3.6.5.2 GO:0000902 ... P61586 29876405
    444623 6bcb:F (1.401) BS02 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    444624 6bcc:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29429876
    444625 6bcc:A (1.8) BS02 EZL 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29429876 BindingDB: Ki=8nM, IC50=3nM, Kd=0.71nM
    444626 6bcd:A (1.43) BS01 peptide ? GO:0000122 ... Q9UI95 30111544
    444627 6bce:A (1.75) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444628 6bce:A (1.75) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444629 6bce:A (1.75) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444630 6bce:A (1.75) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444631 6bce:A (1.75) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444632 6bcf:A (2.92) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444633 6bcf:A (2.92) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444634 6bcf:A (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444635 6bcf:A (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444636 6bcf:A (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444637 6bcf:D (2.92) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444638 6bcf:D (2.92) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444639 6bcf:D (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444640 6bcf:D (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444641 6bcf:D (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444642 6bcf:G (2.92) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444643 6bcf:G (2.92) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444644 6bcf:G (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444645 6bcf:G (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444646 6bcf:G (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444647 6bcf:J (2.92) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444648 6bcf:J (2.92) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444649 6bcf:J (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444650 6bcf:J (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444651 6bcg:A (2.9) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444652 6bcg:A (2.9) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444653 6bcg:A (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444654 6bcg:D (2.9) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444655 6bcg:D (2.9) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444656 6bcg:D (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444657 6bcg:G (2.9) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444658 6bcg:G (2.9) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444659 6bcg:G (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444660 6bcg:J (2.9) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444661 6bcg:J (2.9) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444662 6bcg:J (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444663 6bch:A (3.0) BS01 dna ? GO:0004519 ... C7SWF3 N/A
    444664 6bch:A (3.0) BS02 dna ? GO:0004519 ... C7SWF3 N/A
    444665 6bch:A (3.0) BS03 dna ? GO:0004519 ... C7SWF3 N/A
    444666 6bch:D (3.0) BS01 dna ? GO:0004519 ... C7SWF3 N/A
    444667 6bch:D (3.0) BS02 dna ? GO:0004519 ... C7SWF3 N/A
    444668 6bch:D (3.0) BS03 dna ? GO:0004519 ... C7SWF3 N/A
    444669 6bch:H (3.0) BS01 dna ? GO:0004519 ... C7SWF3 N/A
    444670 6bch:H (3.0) BS02 dna ? GO:0004519 ... C7SWF3 N/A
    444671 6bch:H (3.0) BS03 dna ? GO:0004519 ... C7SWF3 N/A
    444672 6bch:L (3.0) BS01 dna ? GO:0004519 ... C7SWF3 N/A
    444673 6bch:L (3.0) BS02 dna ? GO:0004519 ... C7SWF3 N/A
    444674 6bch:L (3.0) BS03 dna ? GO:0004519 ... C7SWF3 N/A
    444675 6bci:A (2.28) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444676 6bci:A (2.28) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444677 6bci:A (2.28) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444678 6bci:A (2.28) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444679 6bci:A (2.28) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444680 6bcn:A (2.5) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444681 6bcn:A (2.5) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444682 6bcn:A (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444683 6bcn:A (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444684 6bcn:A (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444685 6bcn:C (2.5) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444686 6bcn:C (2.5) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444687 6bcn:C (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444688 6bcn:C (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444689 6bcn:C (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444690 6bcn:G (2.5) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444691 6bcn:G (2.5) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444692 6bcn:G (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444693 6bcn:G (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444694 6bcn:J (2.5) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444695 6bcn:J (2.5) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444696 6bcn:J (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444697 6bcn:J (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444698 6bcn:J (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444699 6bco:A (2.88) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444700 6bco:A (2.88) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444701 6bco:B (2.88) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444702 6bco:B (2.88) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444703 6bco:C (2.88) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444704 6bco:C (2.88) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444705 6bco:D (2.88) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444706 6bco:D (2.88) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444707 6bcq:A (3.25) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444708 6bcq:A (3.25) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444709 6bcq:B (3.25) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444710 6bcq:B (3.25) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444711 6bcq:C (3.25) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444712 6bcq:C (3.25) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444713 6bcq:D (3.25) BS01 ATP ? GO:0002250 ... Q7TN37 29211714
    444714 6bcq:D (3.25) BS02 ATP ? GO:0002250 ... Q7TN37 29211714
    444715 6bcr:A (1.986) BS01 peptide ? GO:0005515 ... P27348 30696821
    444716 6bcr:A (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    444717 6bcr:B (1.986) BS01 peptide ? GO:0005515 ... P27348 30696821
    444718 6bcr:B (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    444719 6bcr:E (1.986) BS01 peptide ? GO:0005515 ... P27348 30696821
    444720 6bcr:E (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    444721 6bcr:F (1.986) BS01 peptide ? GO:0005515 ... P27348 30696821
    444722 6bcr:F (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    444723 6bct:A (2.73) BS01 dna ? GO:0004519 ... C7SWF3 30357419
    444724 6bct:A (2.73) BS02 dna ? GO:0004519 ... C7SWF3 30357419
    444725 6bct:A (2.73) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    444726 6bct:A (2.73) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    444727 6bct:A (2.73) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    444728 6bcu:A (3.8) BS01 ATP 2.7.11.1 GO:0000139 ... P42345 29236692
    444729 6bcu:B (3.8) BS01 ATP 2.7.11.1 GO:0000139 ... P42345 29236692
    444730 6bcu:R (3.8) BS01 GTP 3.6.5.- GO:0000139 ... Q15382 29236692
    444731 6bcu:R (3.8) BS02 MG 3.6.5.- GO:0000139 ... Q15382 29236692
    444732 6bcu:S (3.8) BS01 GTP 3.6.5.- GO:0000139 ... Q15382 29236692
    444733 6bcu:S (3.8) BS02 MG 3.6.5.- GO:0000139 ... Q15382 29236692
    444734 6bcu:W (3.8) BS01 peptide ? GO:0001558 ... Q8N122 29236692
    444735 6bcu:Y (3.8) BS01 peptide ? GO:0001558 ... Q8N122 29236692
    444736 6bcx:A (3.23) BS01 ATP 2.7.11.1 GO:0000139 ... P42345 29236692
    444737 6bcx:B (3.23) BS01 ATP 2.7.11.1 GO:0000139 ... P42345 29236692
    444738 6bcx:W (3.23) BS01 peptide ? GO:0001558 ... Q8N122 29236692
    444739 6bcx:Y (3.23) BS01 peptide ? GO:0001558 ... Q8N122 29236692
    444740 6bcy:A (2.3) BS01 peptide ? GO:0005515 ... P27348 30696821
    444741 6bcy:B (2.3) BS01 peptide ? GO:0005515 ... P27348 30696821
    444742 6bcy:E (2.3) BS01 peptide ? GO:0005515 ... P27348 30696821
    444743 6bcy:F (2.3) BS01 peptide ? GO:0005515 ... P27348 30696821
    444744 6bcz:A (2.23) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444745 6bcz:A (2.23) BS02 D7Y 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444746 6bd0:A (1.45) BS01 dna ? GO:0004519 ... Q4VWW5 N/A
    444747 6bd0:A (1.45) BS02 dna ? GO:0004519 ... Q4VWW5 N/A
    444748 6bd0:A (1.45) BS03 CA ? GO:0004519 ... Q4VWW5 N/A
    444749 6bd0:A (1.45) BS04 CA ? GO:0004519 ... Q4VWW5 N/A
    444750 6bd1:A (2.35) BS01 peptide ? GO:0005515 ... P27348 30696821
    444751 6bd1:A (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    444752 6bd1:B (2.35) BS01 peptide ? GO:0005515 ... P27348 30696821
    444753 6bd1:B (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    444754 6bd1:E (2.35) BS01 peptide ? GO:0005515 ... P27348 30696821
    444755 6bd1:F (2.35) BS01 peptide ? GO:0005515 ... P27348 30696821
    444756 6bd1:F (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    444757 6bd2:A (2.9) BS01 peptide ? GO:0005515 ... P27348 30696821
    444758 6bd2:B (2.9) BS01 peptide ? GO:0005515 ... P27348 30696821
    444759 6bd3:A (2.28) BS01 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    444760 6bd3:A (2.28) BS02 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444761 6bd3:A (2.28) BS03 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444762 6bd3:A (2.28) BS04 FAD 2.2.1.6 GO:0000287 ... P07342 N/A
    444763 6bd3:A (2.28) BS05 HTL 2.2.1.6 GO:0000287 ... P07342 N/A
    444764 6bd3:B (2.28) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444765 6bd3:B (2.28) BS02 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    444766 6bd3:B (2.28) BS03 HTL 2.2.1.6 GO:0000287 ... P07342 N/A
    444767 6bd3:B (2.28) BS04 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444768 6bd3:B (2.28) BS05 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444769 6bd3:B (2.28) BS06 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444770 6bd3:B (2.28) BS07 FAD 2.2.1.6 GO:0000287 ... P07342 N/A
    444771 6bd4:A (2.4) BS01 ZN ? GO:0004888 ... P00268
    Q9ULV1
    30135577
    444772 6bd5:A (2.5) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444773 6bd5:A (2.5) BS02 D7M 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444774 6bd6:A (2.5) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444775 6bd6:A (2.5) BS02 80K 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 29232137
    444776 6bd7:A (2.42) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 N/A
    444777 6bd7:A (2.42) BS02 D7J 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 N/A
    444778 6bd8:A (2.38) BS01 HEM 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 N/A
    444779 6bd8:A (2.38) BS02 D81 1.14.14.1
    1.14.14.55
    1.14.14.56
    1.14.14.73
    GO:0002933 ... P08684 N/A
    444780 6bd9:A (1.982) BS01 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    444781 6bd9:A (1.982) BS02 FAD 2.2.1.6 GO:0000287 ... P07342 N/A
    444782 6bd9:A (1.982) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444783 6bd9:A (1.982) BS04 PYR 2.2.1.6 GO:0000287 ... P07342 N/A
    444784 6bd9:A (1.982) BS05 PYR 2.2.1.6 GO:0000287 ... P07342 N/A
    444785 6bd9:A (1.982) BS06 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444786 6bd9:A (1.982) BS07 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444787 6bd9:A (1.982) BS08 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444788 6bd9:B (1.982) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444789 6bd9:B (1.982) BS02 FAD 2.2.1.6 GO:0000287 ... P07342 N/A
    444790 6bd9:B (1.982) BS03 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    444791 6bd9:B (1.982) BS04 TPP 2.2.1.6 GO:0000287 ... P07342 N/A
    444792 6bd9:B (1.982) BS05 PYR 2.2.1.6 GO:0000287 ... P07342 N/A
    444793 6bd9:B (1.982) BS06 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444794 6bd9:B (1.982) BS07 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444795 6bd9:B (1.982) BS08 OXY 2.2.1.6 GO:0000287 ... P07342 N/A
    444796 6bda:A (1.88) BS01 dna ? GO:0004519 ... Q4VWW5 N/A
    444797 6bda:A (1.88) BS02 dna ? GO:0004519 ... Q4VWW5 N/A
    444798 6bda:A (1.88) BS03 dna ? GO:0004519 ... Q4VWW5 N/A
    444799 6bda:A (1.88) BS04 dna ? GO:0004519 ... Q4VWW5 N/A
    444800 6bda:A (1.88) BS05 MG ? GO:0004519 ... Q4VWW5 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).