SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    445201 6bia:A (2.8) BS01 CA N/A N/A N/A 29681469
    445202 6bia:B (2.8) BS01 CA N/A N/A N/A 29681469
    445203 6bia:C (2.8) BS01 CA N/A N/A N/A 29681469
    445204 6bib:A (1.95) BS01 DW7 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 30883881
    445205 6bib:B (1.95) BS01 DW7 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 30883881
    445206 6bic:A (2.25) BS01 5LH 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 30883881
    445207 6bic:B (2.25) BS01 5LH 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 30883881
    445208 6bid:A (1.15) BS01 DW4 2.7.7.48
    3.4.22.66
    3.6.1.15
    GO:0004197 ... Q83883 30883881
    445209 6bie:B (1.77) BS01 ZN ? GO:0042597 ... P77754 30297779
    445210 6bif:A (1.6) BS01 DSJ 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    445211 6big:A (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    445212 6big:B (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    445213 6big:C (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    445214 6big:D (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    445215 6bih:C (6.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29038012
    445216 6bih:C (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 29038012
    445217 6bii:A (2.0) BS01 NAP 1.1.1.26 GO:0000166 ... F8AEA4 26865263 MOAD: Ki=2000uM
    445218 6bii:B (2.0) BS01 NAP 1.1.1.26 GO:0000166 ... F8AEA4 26865263 MOAD: Ki=2000uM
    445219 6bij:A (2.1) BS01 peptide ? GO:0006955 ... P01903 29317506
    445220 6bij:B (2.1) BS01 peptide ? GO:0006955 ... P01911 29317506
    445221 6bik:A (1.901) BS01 DTJ 2.7.10.2 GO:0004672 ... Q06187 30756207
    445222 6bil:A (2.4) BS01 peptide ? GO:0006955 ... P01903 29317506
    445223 6bil:B (2.4) BS01 peptide ? GO:0006955 ... P01911 29317506
    445224 6bin:A (2.50001) BS01 peptide ? GO:0006955 ... P01903 29317506
    445225 6bin:B (2.50001) BS01 peptide ? GO:0006955 ... P01911 29317506
    445226 6bir:A (2.3) BS01 peptide ? GO:0006955 ... P01903 29317506
    445227 6bir:B (2.3) BS01 peptide ? GO:0006955 ... P01911 29317506
    445228 6biv:A (2.9) BS01 peptide ? GO:0006955 ... P01911 29317506
    445229 6biv:B (2.9) BS01 peptide ? GO:0006955 ... P01903 29317506
    445230 6bix:A (2.2) BS01 peptide ? GO:0006955 ... P01903 29317506
    445231 6bix:B (2.2) BS01 peptide ? GO:0006955 ... P01911 29317506
    445232 6biy:A (2.05005) BS01 peptide ? GO:0006955 ... P01903 29317506
    445233 6biy:B (2.05005) BS01 peptide ? GO:0006955 ... P01911 29317506
    445234 6biz:A (2.1) BS01 peptide ? GO:0006955 ... P01903 29317506
    445235 6biz:B (2.1) BS01 peptide ? GO:0006955 ... P01911 29317506
    445236 6bj2:A (3.35) BS01 peptide ? N/A P01889 30053426
    445237 6bj2:D (3.35) BS01 peptide ? N/A Q6IRV4 30053426
    445238 6bj2:E (3.35) BS01 peptide ? GO:0002376 ... K7N5M4 30053426
    445239 6bj2:E (3.35) BS02 ZN ? GO:0002376 ... K7N5M4 30053426
    445240 6bj3:A (1.898) BS01 peptide ? N/A P01889 30053426
    445241 6bj3:D (1.898) BS01 peptide ? N/A Q6IRV4 30053426
    445242 6bj3:H (1.898) BS01 peptide ? GO:0002376 ... K7N5M4 30053426
    445243 6bj6:A (1.73) BS01 DTS 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    445244 6bj7:A (1.56) BS01 DU7 2.4.2.1 GO:0003824 ... A0A0U3AGT1 N/A
    445245 6bj8:A (1.75) BS01 peptide ? N/A P01889 30053426
    445246 6bj8:D (1.75) BS01 peptide ? N/A Q6IRV4 30053426
    445247 6bj8:H (1.75) BS01 peptide ? GO:0002376 ... K7N5M4 30053426
    445248 6bja:A (1.60001) BS01 COA ? GO:0003985 ... F1L3N8 29381332
    445249 6bjb:A (1.50001) BS01 1VU ? GO:0003985 ... F1KYX0 29381332
    445250 6bjb:B (1.50001) BS01 1VU ? GO:0003985 ... F1KYX0 29381332
    445251 6bjc:A (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445252 6bjc:B (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445253 6bjc:C (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445254 6bjc:D (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445255 6bjc:E (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445256 6bjc:F (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445257 6bjc:G (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445258 6bjc:H (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445259 6bjc:I (3.3) BS01 G2P ? GO:0000226 ... P02554 29120325
    445260 6bjc:J (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445261 6bjc:K (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445262 6bjc:L (3.3) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 29120325
    445263 6bjd:A (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445264 6bjd:A (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445265 6bjd:A (2.8) BS03 E64 3.4.22.54 GO:0004198 ... P20807 29382717
    445266 6bjd:B (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445267 6bjd:B (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445268 6bjd:B (2.8) BS03 E64 3.4.22.54 GO:0004198 ... P20807 29382717
    445269 6bjd:C (2.8) BS01 E64 3.4.22.54 GO:0004198 ... P20807 29382717
    445270 6bjd:C (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445271 6bjd:C (2.8) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445272 6bjd:C (2.8) BS04 E64 3.4.22.54 GO:0004198 ... P20807 29382717
    445273 6bjd:D (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445274 6bjd:D (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445275 6bjd:D (2.8) BS03 E64 3.4.22.54 GO:0004198 ... P20807 29382717
    445276 6bjg:A (2.29) BS01 rna ? GO:0003723 ... Q66104 31021526
    445277 6bjg:A (2.29) BS02 rna ? GO:0003723 ... Q66104 31021526
    445278 6bjg:B (2.29) BS01 rna ? GO:0003723 ... Q66104 31021526
    445279 6bjg:B (2.29) BS02 rna ? GO:0003723 ... Q66104 31021526
    445280 6bjh:A (2.58) BS01 rna ? GO:0003723 ... Q66104 31021526
    445281 6bjh:A (2.58) BS02 rna ? GO:0003723 ... Q66104 31021526
    445282 6bjh:B (2.58) BS01 rna ? GO:0003723 ... Q66104 31021526
    445283 6bjh:B (2.58) BS02 rna ? GO:0003723 ... Q66104 31021526
    445284 6bjo:A (1.75) BS01 DUY ? N/A Q9NRD5 29280296 MOAD: ic50=513nM
    445285 6bjo:B (1.75) BS01 DUY ? N/A Q9NRD5 29280296 MOAD: ic50=513nM
    445286 6bjq:A (2.7) BS01 BDP 3.2.1.31 GO:0004553 ... C4Z6Z2 30062115
    445287 6bjr:A (6.0) BS01 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445288 6bjr:A (6.0) BS02 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445289 6bjr:A (6.0) BS03 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445290 6bjr:A (6.0) BS04 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445291 6bjr:A (6.0) BS05 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445292 6bjr:A (6.0) BS06 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    445293 6bjs:I (5.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 29499135
    445294 6bjs:I (5.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 29499135
    445295 6bjs:I (5.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 29499135
    445296 6bjs:J (5.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445297 6bjs:J (5.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445298 6bjs:J (5.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445299 6bjs:J (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445300 6bjs:J (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445301 6bjs:J (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    445302 6bjv:A (2.198) BS01 rna ? GO:0003723 ... Q66104 31021526
    445303 6bjv:A (2.198) BS02 rna ? GO:0003723 ... Q66104 31021526
    445304 6bjv:B (2.198) BS01 rna ? GO:0003723 ... Q66104 31021526
    445305 6bjv:B (2.198) BS02 rna ? GO:0003723 ... Q66104 31021526
    445306 6bjy:A (3.46) BS01 rna ? GO:0003723 ... P03521 29437970
    445307 6bjy:A (3.46) BS02 DV4 ? GO:0003723 ... P03521 29437970
    445308 6bjy:B (3.46) BS01 rna ? GO:0003723 ... P03521 29437970
    445309 6bjy:C (3.46) BS01 rna ? GO:0003723 ... P03521 29437970
    445310 6bjy:D (3.46) BS01 rna ? GO:0003723 ... P03521 29437970
    445311 6bjy:E (3.46) BS01 rna ? GO:0003723 ... P03521 29437970
    445312 6bk0:A (1.47) BS01 UDP 2.4.1.- GO:0000166 ... Q7XT97 29140092
    445313 6bk1:A (1.58) BS01 UDP 2.4.1.- GO:0000166 ... Q7XT97 29140092
    445314 6bk2:A (1.68) BS01 UDP 2.4.1.- GO:0000166 ... Q7XT97 29140092
    445315 6bk3:A (2.17) BS01 UDP 2.4.1.- GO:0000166 ... Q7XT97 29140092
    445316 6bk3:A (2.17) BS02 B2S 2.4.1.- GO:0000166 ... Q7XT97 29140092
    445317 6bk5:A (2.401) BS01 CA 2.3.2.27 GO:0001784 ... F2UL73 29498112
    445318 6bk8:A (3.3) BS01 rna ? GO:0000244 ... P33334 29146870
    445319 6bk8:A (3.3) BS02 rna ? GO:0000244 ... P33334 29146870
    445320 6bk8:A (3.3) BS03 rna ? GO:0000244 ... P33334 29146870
    445321 6bk8:A (3.3) BS04 rna ? GO:0000244 ... P33334 29146870
    445322 6bk8:A (3.3) BS05 rna ? GO:0000244 ... P33334 29146870
    445323 6bk8:A (3.3) BS06 IHP ? GO:0000244 ... P33334 29146870
    445324 6bk8:B (3.3) BS01 rna ? GO:0000244 ... P36048 29146870
    445325 6bk8:B (3.3) BS02 GTP ? GO:0000244 ... P36048 29146870
    445326 6bk8:B (3.3) BS03 MG ? GO:0000244 ... P36048 29146870
    445327 6bk8:E (3.3) BS01 rna ? GO:0000350 ... P28004 29146870
    445328 6bk8:E (3.3) BS02 rna ? GO:0000350 ... P28004 29146870
    445329 6bk8:F (3.3) BS01 rna ? GO:0000398 ... P38241 29146870
    445330 6bk8:F (3.3) BS02 ZN ? GO:0000398 ... P38241 29146870
    445331 6bk8:F (3.3) BS03 ZN ? GO:0000398 ... P38241 29146870
    445332 6bk8:G (3.3) BS01 rna ? GO:0000387 ... Q12046 29146870
    445333 6bk8:G (3.3) BS02 rna ? GO:0000387 ... Q12046 29146870
    445334 6bk8:G (3.3) BS03 ZN ? GO:0000387 ... Q12046 29146870
    445335 6bk8:H (3.3) BS01 rna ? GO:0000398 ... Q03772 29146870
    445336 6bk8:H (3.3) BS02 rna ? GO:0000398 ... Q03772 29146870
    445337 6bk8:H (3.3) BS03 rna ? GO:0000398 ... Q03772 29146870
    445338 6bk8:I (3.3) BS01 rna ? GO:0000282 ... P25337 29146870
    445339 6bk8:I (3.3) BS02 rna ? GO:0000282 ... P25337 29146870
    445340 6bk8:I (3.3) BS03 ZN ? GO:0000282 ... P25337 29146870
    445341 6bk8:I (3.3) BS04 ZN ? GO:0000282 ... P25337 29146870
    445342 6bk8:I (3.3) BS05 ZN ? GO:0000282 ... P25337 29146870
    445343 6bk8:K (3.3) BS01 rna ? GO:0000398 ... Q03375 29146870
    445344 6bk8:K (3.3) BS02 rna ? GO:0000398 ... Q03375 29146870
    445345 6bk8:M (3.3) BS01 rna ? GO:0000348 ... P40968 29146870
    445346 6bk8:N (3.3) BS01 rna ? GO:0000350 ... P33411 29146870
    445347 6bk8:O (3.3) BS01 IHP ? GO:0000350 ... Q02775 29146870
    445348 6bk8:O (3.3) BS02 ZN ? GO:0000350 ... Q02775 29146870
    445349 6bk8:P (3.3) BS01 rna 3.6.4.13 GO:0000350 ... P24384 29146870
    445350 6bk8:P (3.3) BS02 rna 3.6.4.13 GO:0000350 ... P24384 29146870
    445351 6bk8:R (3.3) BS01 rna ? GO:0000384 ... P53277 29146870
    445352 6bk8:R (3.3) BS02 rna ? GO:0000384 ... P53277 29146870
    445353 6bk8:S (3.3) BS01 rna ? GO:0000350 ... Q03654 29146870
    445354 6bk8:S (3.3) BS02 rna ? GO:0000350 ... Q03654 29146870
    445355 6bk8:T (3.3) BS01 rna ? GO:0000245 ... Q12309 29146870
    445356 6bk8:a (3.3) BS01 rna ? GO:0000243 ... Q06217 29146870
    445357 6bk8:b (3.3) BS01 rna ? GO:0000243 ... P54999 29146870
    445358 6bk8:c (3.3) BS01 rna ? GO:0000243 ... Q12330 29146870
    445359 6bk8:d (3.3) BS01 rna ? GO:0000243 ... P40204 29146870
    445360 6bk8:f (3.3) BS01 rna ? GO:0000243 ... P40018 29146870
    445361 6bk8:g (3.3) BS01 rna ? GO:0000243 ... P43321 29146870
    445362 6bk8:h (3.3) BS01 rna ? GO:0000243 ... Q02260 29146870
    445363 6bk8:k (3.3) BS01 rna ? GO:0000243 ... P40018 29146870
    445364 6bk8:o (3.3) BS01 rna ? GO:0000243 ... P43321 29146870
    445365 6bk8:r (3.3) BS01 rna ? GO:0000398 ... P40567 29146870
    445366 6bka:A (1.65) BS01 FMN 1.13.12.16 GO:0004497 ... Q12723 29383742
    445367 6bka:A (1.65) BS02 33O 1.13.12.16 GO:0004497 ... Q12723 29383742
    445368 6bke:A (1.95) BS01 DVJ 2.7.10.2 GO:0004672 ... Q06187 30756207
    445369 6bkf:A (3.25) BS01 dna 6.5.1.1 GO:0003677 ... P49917 29980672
    445370 6bkf:A (3.25) BS02 dna 6.5.1.1 GO:0003677 ... P49917 29980672
    445371 6bkf:A (3.25) BS03 AMP 6.5.1.1 GO:0003677 ... P49917 29980672
    445372 6bkg:A (2.402) BS01 dna 6.5.1.1 GO:0003677 ... P49917 29980672
    445373 6bkg:A (2.402) BS02 dna 6.5.1.1 GO:0003677 ... P49917 29980672
    445374 6bkg:A (2.402) BS03 dna 6.5.1.1 GO:0003677 ... P49917 29980672
    445375 6bkg:A (2.402) BS04 AMP 6.5.1.1 GO:0003677 ... P49917 29980672
    445376 6bkh:A (1.792) BS01 DVD 2.7.10.2 GO:0004672 ... Q06187 30756207
    445377 6bkj:A (3.2) BS01 peptide 3.4.22.54 GO:0004198 ... P20807 29382717
    445378 6bkj:A (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445379 6bkj:A (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445380 6bkj:B (3.2) BS01 peptide 3.4.22.54 GO:0004198 ... P20807 29382717
    445381 6bkj:B (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445382 6bkj:B (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445383 6bkj:C (3.2) BS01 peptide 3.4.22.54 GO:0004198 ... P20807 29382717
    445384 6bkj:C (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445385 6bkj:C (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445386 6bkj:D (3.2) BS01 peptide 3.4.22.54 GO:0004198 ... P20807 29382717
    445387 6bkj:D (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445388 6bkj:D (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    445389 6bkq:A (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    445390 6bkq:C (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    445391 6bkq:E (2.25) BS01 SIA ? GO:0019031 ... Q91MA7 29593268
    445392 6bkr:A (1.76) BS01 SIA ? GO:0019031 ... A4GYF9 29593268
    445393 6bks:A (1.8) BS01 SIA ? GO:0019031 ... A4GYF9 29593268
    445394 6bkt:A (1.8) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 29593268
    445395 6bku:A (2.0) BS01 DXV 2.7.11.17 GO:0004672 ... Q96RR4 N/A BindingDB: IC50=7.9nM
    445396 6bkw:A (1.499) BS01 DXM 2.7.10.2 GO:0004672 ... Q06187 30756207
    445397 6bkw:A (1.499) BS02 FPZ 2.7.10.2 GO:0004672 ... Q06187 30756207
    445398 6bkx:A (1.65) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    445399 6bkx:A (1.65) BS02 DWP 1.1.1.42 GO:0000287 ... O75874 30004704
    445400 6bkx:B (1.65) BS01 DWP 1.1.1.42 GO:0000287 ... O75874 30004704

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).