SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    445801 6boh:HC (3.4) BS02 ZN ? GO:0003735 ... P62652 29731232
    445802 6boh:HD (3.4) BS01 rna ? GO:0000028 ... P62660 29731232
    445803 6boh:I (3.4) BS01 rna ? GO:0002181 ... Q72I19 29731232
    445804 6boh:IC (3.4) BS01 rna ? GO:0003735 ... Q72GW3 29731232
    445805 6boh:IC (3.4) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    445806 6boh:ID (3.4) BS01 rna ? GO:0003723 ... P62661 29731232
    445807 6boh:J (3.4) BS01 rna ? GO:0003735 ... Q72GV5 29731232
    445808 6boh:JA (3.4) BS01 rna ? GO:0003747 ... P0A7I0 29731232
    445809 6boh:JA (3.4) BS02 rna ? GO:0003747 ... P0A7I0 29731232
    445810 6boh:JB (3.4) BS01 rna ? GO:0002181 ... Q72I07 29731232
    445811 6boh:JB (3.4) BS02 rna ? GO:0002181 ... Q72I07 29731232
    445812 6boh:JC (3.4) BS01 rna ? GO:0003735 ... P80340 29731232
    445813 6boh:K (3.4) BS01 rna ? GO:0003729 ... Q72IN1 29731232
    445814 6boh:K (3.4) BS02 MG ? GO:0003729 ... Q72IN1 29731232
    445815 6boh:KB (3.4) BS01 rna ? GO:0003735 ... Q72I04 29731232
    445816 6boh:KC (3.4) BS01 rna ? GO:0003735 ... Q72L77 29731232
    445817 6boh:L (3.4) BS01 rna ? GO:0003735 ... Q72I14 29731232
    445818 6boh:L (3.4) BS02 rna ? GO:0003735 ... Q72I14 29731232
    445819 6boh:L (3.4) BS03 MG ? GO:0003735 ... Q72I14 29731232
    445820 6boh:L (3.4) BS04 MG ? GO:0003735 ... Q72I14 29731232
    445821 6boh:LA (3.4) BS01 rna ? GO:0003735 ... P62662 29731232
    445822 6boh:LB (3.4) BS01 rna ? GO:0003735 ... Q72I05 29731232
    445823 6boh:LC (3.4) BS01 rna ? GO:0003735 ... Q72I28 29731232
    445824 6boh:M (3.4) BS01 rna ? GO:0003735 ... Q72I23 29731232
    445825 6boh:M (3.4) BS02 MG ? GO:0003735 ... Q72I23 29731232
    445826 6boh:MA (3.4) BS01 rna ? GO:0003676 ... P62663 29731232
    445827 6boh:MB (3.4) BS01 rna ? GO:0000049 ... Q72I16 29731232
    445828 6boh:MB (3.4) BS02 rna ? GO:0000049 ... Q72I16 29731232
    445829 6boh:MB (3.4) BS03 rna ? GO:0000049 ... Q72I16 29731232
    445830 6boh:N (3.4) BS01 rna ? GO:0000049 ... Q72I11 29731232
    445831 6boh:N (3.4) BS02 rna ? GO:0000049 ... Q72I11 29731232
    445832 6boh:NA (3.4) BS01 rna ? GO:0003723 ... P62664 29731232
    445833 6boh:NB (3.4) BS01 rna ? GO:0002181 ... Q72I19 29731232
    445834 6boh:O (3.4) BS01 rna ? GO:0003735 ... Q72I33 29731232
    445835 6boh:OA (3.4) BS01 rna ? GO:0003723 ... P62665 29731232
    445836 6boh:OB (3.4) BS01 rna ? GO:0003735 ... Q72GV5 29731232
    445837 6boh:OC (3.4) BS01 rna ? GO:0003747 ... P0A7I0 29731232
    445838 6boh:OC (3.4) BS02 rna ? GO:0003747 ... P0A7I0 29731232
    445839 6boh:OC (3.4) BS03 rna ? GO:0003747 ... P0A7I0 29731232
    445840 6boh:P (3.4) BS01 rna ? GO:0003735 ... Q72I20 29731232
    445841 6boh:P (3.4) BS02 rna ? GO:0003735 ... Q72I20 29731232
    445842 6boh:PA (3.4) BS01 rna ? GO:0003735 ... P62666 29731232
    445843 6boh:PA (3.4) BS02 MG ? GO:0003735 ... P62666 29731232
    445844 6boh:PB (3.4) BS01 rna ? GO:0003729 ... Q72IN1 29731232
    445845 6boh:Q (3.4) BS01 rna ? GO:0003735 ... Q72JU9 29731232
    445846 6boh:Q (3.4) BS02 rna ? GO:0003735 ... Q72JU9 29731232
    445847 6boh:QA (3.4) BS01 rna ? GO:0000049 ... P62667 29731232
    445848 6boh:QA (3.4) BS02 rna ? GO:0000049 ... P62667 29731232
    445849 6boh:QB (3.4) BS01 rna ? GO:0003735 ... Q72I14 29731232
    445850 6boh:QC (3.4) BS01 rna ? GO:0003735 ... P62662 29731232
    445851 6boh:R (3.4) BS01 rna ? GO:0000027 ... Q72L76 29731232
    445852 6boh:RA (3.4) BS01 rna ? GO:0003735 ... P62668 29731232
    445853 6boh:RB (3.4) BS01 rna ? GO:0003735 ... Q72I23 29731232
    445854 6boh:RC (3.4) BS01 rna ? GO:0003676 ... P62663 29731232
    445855 6boh:RC (3.4) BS02 MG ? GO:0003676 ... P62663 29731232
    445856 6boh:S (3.4) BS01 rna ? GO:0003723 ... Q72HR2 29731232
    445857 6boh:SA (3.4) BS01 rna ? GO:0000049 ... P62669 29731232
    445858 6boh:SA (3.4) BS02 rna ? GO:0000049 ... P62669 29731232
    445859 6boh:SB (3.4) BS01 rna ? GO:0000049 ... Q72I11 29731232
    445860 6boh:SB (3.4) BS02 rna ? GO:0000049 ... Q72I11 29731232
    445861 6boh:SC (3.4) BS01 rna ? GO:0003723 ... P62664 29731232
    445862 6boh:SC (3.4) BS02 MG ? GO:0003723 ... P62664 29731232
    445863 6boh:T (3.4) BS01 rna ? GO:0003735 ... Q72I09 29731232
    445864 6boh:TA (3.4) BS01 rna ? GO:0000049 ... P62653 29731232
    445865 6boh:TB (3.4) BS01 rna ? GO:0003735 ... Q72I33 29731232
    445866 6boh:TC (3.4) BS01 rna ? GO:0003723 ... P62665 29731232
    445867 6boh:U (3.4) BS01 rna ? GO:0003735 ... Q72I06 29731232
    445868 6boh:UA (3.4) BS01 rna ? GO:0003735 ... P62654 29731232
    445869 6boh:UB (3.4) BS01 rna ? GO:0003735 ... Q72I20 29731232
    445870 6boh:UB (3.4) BS02 rna ? GO:0003735 ... Q72I20 29731232
    445871 6boh:UC (3.4) BS01 rna ? GO:0003735 ... P62666 29731232
    445872 6boh:V (3.4) BS01 rna ? GO:0003723 ... Q72I15 29731232
    445873 6boh:V (3.4) BS02 ZN ? GO:0003723 ... Q72I15 29731232
    445874 6boh:VA (3.4) BS01 rna ? GO:0000049 ... P61941 29731232
    445875 6boh:VA (3.4) BS02 MG ? GO:0000049 ... P61941 29731232
    445876 6boh:VB (3.4) BS01 rna ? GO:0003735 ... Q72JU9 29731232
    445877 6boh:VB (3.4) BS02 rna ? GO:0003735 ... Q72JU9 29731232
    445878 6boh:VC (3.4) BS01 rna ? GO:0000049 ... P62667 29731232
    445879 6boh:VC (3.4) BS02 rna ? GO:0000049 ... P62667 29731232
    445880 6boh:W (3.4) BS01 rna ? GO:0003723 ... Q72IA7 29731232
    445881 6boh:W (3.4) BS02 rna ? GO:0003723 ... Q72IA7 29731232
    445882 6boh:WA (3.4) BS01 rna ? GO:0000049 ... P62655 29731232
    445883 6boh:WA (3.4) BS02 rna ? GO:0000049 ... P62655 29731232
    445884 6boh:WB (3.4) BS01 rna ? GO:0000027 ... Q72L76 29731232
    445885 6boh:WC (3.4) BS01 rna ? GO:0003735 ... P62668 29731232
    445886 6boh:X (3.4) BS01 rna ? GO:0003735 ... Q72HR3 29731232
    445887 6boh:X (3.4) BS02 rna ? GO:0003735 ... Q72HR3 29731232
    445888 6boh:X (3.4) BS03 rna ? GO:0003735 ... Q72HR3 29731232
    445889 6boh:XA (3.4) BS01 rna ? GO:0003735 ... P62656 29731232
    445890 6boh:XB (3.4) BS01 rna ? GO:0003723 ... Q72HR2 29731232
    445891 6boh:XC (3.4) BS01 rna ? GO:0000049 ... P62669 29731232
    445892 6boh:XC (3.4) BS02 rna ? GO:0000049 ... P62669 29731232
    445893 6boh:Y (3.4) BS01 rna ? GO:0003735 ... Q72G84 29731232
    445894 6boh:Y (3.4) BS02 rna ? GO:0003735 ... Q72G84 29731232
    445895 6boh:YA (3.4) BS01 rna ? GO:0003735 ... P62657 29731232
    445896 6boh:YA (3.4) BS02 rna ? GO:0003735 ... P62657 29731232
    445897 6boh:YB (3.4) BS01 rna ? GO:0003735 ... Q72I09 29731232
    445898 6boh:YC (3.4) BS01 rna ? GO:0000049 ... P62653 29731232
    445899 6boh:Z (3.4) BS01 rna ? GO:0003735 ... Q72I12 29731232
    445900 6boh:ZA (3.4) BS01 rna ? GO:0003735 ... P62238 29731232
    445901 6boh:ZB (3.4) BS01 rna ? GO:0003735 ... Q72I06 29731232
    445902 6boh:ZC (3.4) BS01 rna ? GO:0003735 ... P62654 29731232
    445903 6boi:A (2.102) BS01 E0Y ? GO:0016740 ... A5U5L6 N/A
    445904 6boi:B (2.102) BS01 E0Y ? GO:0016740 ... A5U5L6 N/A
    445905 6boj:A (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445906 6boj:A (1.7) BS02 E31 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445907 6boj:B (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445908 6boj:B (1.7) BS02 E31 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445909 6boj:C (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445910 6boj:C (1.7) BS02 E31 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445911 6boj:D (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445912 6boj:D (1.7) BS02 E31 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    445913 6bok:AA (3.55) BS01 rna ? GO:0003735 ... Q72I22 29731232
    445914 6bok:AA (3.55) BS02 rna ? GO:0003735 ... Q72I22 29731232
    445915 6bok:AB (3.55) BS01 rna ? GO:0000028 ... P62660 29731232
    445916 6bok:AC (3.55) BS01 rna ? GO:0003735 ... Q72HR3 29731232
    445917 6bok:AC (3.55) BS02 rna ? GO:0003735 ... Q72HR3 29731232
    445918 6bok:AC (3.55) BS03 rna ? GO:0003735 ... Q72HR3 29731232
    445919 6bok:AD (3.55) BS01 rna ? GO:0003735 ... P62238 29731232
    445920 6bok:BA (3.55) BS01 rna ? GO:0003735 ... Q72JR0 29731232
    445921 6bok:BA (3.55) BS02 rna ? GO:0003735 ... Q72JR0 29731232
    445922 6bok:BB (3.55) BS01 rna ? GO:0003723 ... P62661 29731232
    445923 6bok:BC (3.55) BS01 rna ? GO:0003735 ... Q72G84 29731232
    445924 6bok:BD (3.55) BS01 rna ? GO:0003735 ... P62658 29731232
    445925 6bok:CA (3.55) BS01 rna ? GO:0003735 ... P62652 29731232
    445926 6bok:CC (3.55) BS01 rna ? GO:0003735 ... Q72I12 29731232
    445927 6bok:CD (3.55) BS01 rna ? GO:0003735 ... P62659 29731232
    445928 6bok:DA (3.55) BS01 rna ? GO:0003735 ... Q72GW3 29731232
    445929 6bok:DA (3.55) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    445930 6bok:DC (3.55) BS01 rna ? GO:0003735 ... Q72I22 29731232
    445931 6bok:DC (3.55) BS02 rna ? GO:0003735 ... Q72I22 29731232
    445932 6bok:DD (3.55) BS01 rna ? GO:0000028 ... P62660 29731232
    445933 6bok:E (3.55) BS01 rna ? GO:0002181 ... Q72I07 29731232
    445934 6bok:E (3.55) BS02 MG ? GO:0002181 ... Q72I07 29731232
    445935 6bok:EA (3.55) BS01 rna N/A GO:0003735 ... N/A 29731232
    445936 6bok:EA (3.55) BS02 MG N/A GO:0003735 ... N/A 29731232
    445937 6bok:EC (3.55) BS01 rna ? GO:0003735 ... Q72JR0 29731232
    445938 6bok:ED (3.55) BS01 rna ? GO:0003723 ... P62661 29731232
    445939 6bok:ED (3.55) BS02 MG ? GO:0003723 ... P62661 29731232
    445940 6bok:F (3.55) BS01 rna ? GO:0003735 ... Q72I04 29731232
    445941 6bok:FA (3.55) BS01 rna ? GO:0003735 ... Q72L77 29731232
    445942 6bok:FC (3.55) BS01 rna ? GO:0003735 ... P62652 29731232
    445943 6bok:FC (3.55) BS02 MG ? GO:0003735 ... P62652 29731232
    445944 6bok:G (3.55) BS01 rna ? GO:0003735 ... Q72I05 29731232
    445945 6bok:G (3.55) BS02 MG ? GO:0003735 ... Q72I05 29731232
    445946 6bok:GA (3.55) BS01 rna ? GO:0003735 ... Q72I28 29731232
    445947 6bok:GC (3.55) BS01 rna ? GO:0003735 ... Q72GW3 29731232
    445948 6bok:GC (3.55) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    445949 6bok:GD (3.55) BS01 rna ? GO:0003747 ... P0A7I0 29731232
    445950 6bok:GD (3.55) BS02 rna ? GO:0003747 ... P0A7I0 29731232
    445951 6bok:GD (3.55) BS03 rna ? GO:0003747 ... P0A7I0 29731232
    445952 6bok:GD (3.55) BS04 rna ? GO:0003747 ... P0A7I0 29731232
    445953 6bok:H (3.55) BS01 rna ? GO:0000049 ... Q72I16 29731232
    445954 6bok:H (3.55) BS02 rna ? GO:0000049 ... Q72I16 29731232
    445955 6bok:H (3.55) BS03 rna ? GO:0000049 ... Q72I16 29731232
    445956 6bok:HB (3.55) BS01 rna ? GO:0002181 ... Q72I07 29731232
    445957 6bok:HB (3.55) BS02 rna ? GO:0002181 ... Q72I07 29731232
    445958 6bok:HB (3.55) BS03 MG ? GO:0002181 ... Q72I07 29731232
    445959 6bok:HC (3.55) BS01 rna N/A GO:0003735 ... N/A 29731232
    445960 6bok:HC (3.55) BS02 MG N/A GO:0003735 ... N/A 29731232
    445961 6bok:HD (3.55) BS01 rna ? GO:0003747 ... P0A7I0 29731232
    445962 6bok:HD (3.55) BS02 rna ? GO:0003747 ... P0A7I0 29731232
    445963 6bok:HD (3.55) BS03 rna ? GO:0003747 ... P0A7I0 29731232
    445964 6bok:HD (3.55) BS04 rna ? GO:0003747 ... P0A7I0 29731232
    445965 6bok:I (3.55) BS01 rna ? GO:0002181 ... Q72I19 29731232
    445966 6bok:IB (3.55) BS01 rna ? GO:0003735 ... Q72I04 29731232
    445967 6bok:IB (3.55) BS02 MG ? GO:0003735 ... Q72I04 29731232
    445968 6bok:IC (3.55) BS01 rna ? GO:0003735 ... Q72L77 29731232
    445969 6bok:J (3.55) BS01 rna ? GO:0003735 ... Q72GV5 29731232
    445970 6bok:J (3.55) BS02 MG ? GO:0003735 ... Q72GV5 29731232
    445971 6bok:J (3.55) BS03 MG ? GO:0003735 ... Q72GV5 29731232
    445972 6bok:J (3.55) BS04 MG ? GO:0003735 ... Q72GV5 29731232
    445973 6bok:JA (3.55) BS01 rna ? GO:0003735 ... P62662 29731232
    445974 6bok:JA (3.55) BS02 MG ? GO:0003735 ... P62662 29731232
    445975 6bok:JB (3.55) BS01 rna ? GO:0003735 ... Q72I05 29731232
    445976 6bok:JC (3.55) BS01 rna ? GO:0003735 ... Q72I28 29731232
    445977 6bok:K (3.55) BS01 rna ? GO:0003729 ... Q72IN1 29731232
    445978 6bok:KA (3.55) BS01 rna ? GO:0003676 ... P62663 29731232
    445979 6bok:KB (3.55) BS01 rna ? GO:0000049 ... Q72I16 29731232
    445980 6bok:KB (3.55) BS02 rna ? GO:0000049 ... Q72I16 29731232
    445981 6bok:KB (3.55) BS03 rna ? GO:0000049 ... Q72I16 29731232
    445982 6bok:L (3.55) BS01 rna ? GO:0003735 ... Q72I14 29731232
    445983 6bok:L (3.55) BS02 rna ? GO:0003735 ... Q72I14 29731232
    445984 6bok:L (3.55) BS03 MG ? GO:0003735 ... Q72I14 29731232
    445985 6bok:LA (3.55) BS01 rna ? GO:0003723 ... P62664 29731232
    445986 6bok:LB (3.55) BS01 rna ? GO:0002181 ... Q72I19 29731232
    445987 6bok:LB (3.55) BS02 MG ? GO:0002181 ... Q72I19 29731232
    445988 6bok:M (3.55) BS01 rna ? GO:0003735 ... Q72I23 29731232
    445989 6bok:M (3.55) BS02 rna ? GO:0003735 ... Q72I23 29731232
    445990 6bok:M (3.55) BS03 MG ? GO:0003735 ... Q72I23 29731232
    445991 6bok:M (3.55) BS04 MG ? GO:0003735 ... Q72I23 29731232
    445992 6bok:MA (3.55) BS01 rna ? GO:0003723 ... P62665 29731232
    445993 6bok:MB (3.55) BS01 rna ? GO:0003735 ... Q72GV5 29731232
    445994 6bok:MB (3.55) BS02 MG ? GO:0003735 ... Q72GV5 29731232
    445995 6bok:MC (3.55) BS01 rna ? GO:0003735 ... P62662 29731232
    445996 6bok:N (3.55) BS01 rna ? GO:0000049 ... Q72I11 29731232
    445997 6bok:NA (3.55) BS01 rna ? GO:0003735 ... P62666 29731232
    445998 6bok:NA (3.55) BS02 MG ? GO:0003735 ... P62666 29731232
    445999 6bok:NB (3.55) BS01 rna ? GO:0003729 ... Q72IN1 29731232
    446000 6bok:NC (3.55) BS01 rna ? GO:0003676 ... P62663 29731232

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).