SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447201 6bww:A (2.1) BS10 ACT 1.14.14.1 GO:0004497 ... P00178 29730233
    447202 6bwy:A (2.9) BS01 dna 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447203 6bwy:A (2.9) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447204 6bwy:B (2.9) BS01 dna 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447205 6bwy:B (2.9) BS02 dna 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447206 6bwy:B (2.9) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447207 6bwy:E (2.9) BS01 dna 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447208 6bwy:E (2.9) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447209 6bwy:G (2.9) BS01 dna 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447210 6bwy:G (2.9) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000723 ... O13988
    Q9HC16
    29596531
    447211 6bx4:A (2.55) BS01 DMU ? GO:0005886 ... Q6J5N4 29393634
    447212 6bx4:B (2.55) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    447213 6bx4:B (2.55) BS02 F ? GO:0005886 ... Q6J5N4 29393634
    447214 6bx4:B (2.55) BS03 DMU ? GO:0005886 ... Q6J5N4 29393634
    447215 6bx5:A (3.0) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    447216 6bx5:B (3.0) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    447217 6bx6:A (2.9) BS01 EDJ 2.7.11.1
    2.7.11.31
    GO:0004672 ... P54646 29695504
    447218 6bx7:A (2.85) BS01 CA ? GO:0005509 ... Q08174 31583286
    447219 6bx7:A (2.85) BS02 CA ? GO:0005509 ... Q08174 31583286
    447220 6bx7:A (2.85) BS03 CA ? GO:0005509 ... Q08174 31583286
    447221 6bx7:A (2.85) BS04 CA ? GO:0005509 ... Q08174 31583286
    447222 6bx7:A (2.85) BS05 CA ? GO:0005509 ... Q08174 31583286
    447223 6bx7:A (2.85) BS06 CA ? GO:0005509 ... Q08174 31583286
    447224 6bx7:A (2.85) BS07 CA ? GO:0005509 ... Q08174 31583286
    447225 6bx7:A (2.85) BS08 CA ? GO:0005509 ... Q08174 31583286
    447226 6bx7:A (2.85) BS09 CA ? GO:0005509 ... Q08174 31583286
    447227 6bx7:A (2.85) BS10 CA ? GO:0005509 ... Q08174 31583286
    447228 6bx7:A (2.85) BS11 CA ? GO:0005509 ... Q08174 31583286
    447229 6bxb:A (2.39) BS01 CA ? N/A P05106
    P20701
    30018079
    447230 6bxb:B (2.39) BS01 MG ? N/A P05106
    P20701
    30018079
    447231 6bxf:A (3.2) BS01 CA ? N/A P05106
    P20701
    30018079
    447232 6bxf:B (3.2) BS01 MG ? N/A P05106
    P20701
    30018079
    447233 6bxg:A (1.45) BS01 peptide ? N/A Q9KRY7 N/A
    447234 6bxh:A (2.445) BS01 EE7 ? GO:0005634 ... O00255 N/A BindingDB: IC50=10.0nM
    447235 6bxi:A (2.2) BS01 ANP 2.7.11.1 GO:0004672 ... Q15208 29983373
    447236 6bxi:B (2.2) BS01 ANP 2.7.11.1 GO:0004672 ... Q15208 29983373
    447237 6bxj:A (2.092) BS01 MG ? N/A P05106
    P20701
    30209215
    447238 6bxk:A (2.347) BS01 MTA 2.5.1.108 GO:0016740 ... O58832 29590073
    447239 6bxk:A (2.347) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    447240 6bxk:B (2.347) BS01 MTA 2.5.1.108 GO:0016740 ... O58832 29590073
    447241 6bxk:B (2.347) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    447242 6bxl:A (2.301) BS01 SAM 2.5.1.108 GO:0016740 ... O58832 29590073
    447243 6bxl:A (2.301) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    447244 6bxl:B (2.301) BS01 SAM 2.5.1.108 GO:0016740 ... O58832 29590073
    447245 6bxl:B (2.301) BS02 SF4 2.5.1.108 GO:0016740 ... O58832 29590073
    447246 6bxm:A (2.252) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447247 6bxm:A (2.252) BS02 SAM 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447248 6bxm:B (2.252) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447249 6bxm:B (2.252) BS02 ABA 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447250 6bxm:B (2.252) BS03 MTA 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447251 6bxn:A (2.079) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447252 6bxn:A (2.079) BS02 SAM 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447253 6bxn:B (2.079) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447254 6bxn:B (2.079) BS02 SAM 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447255 6bxo:A (1.655) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447256 6bxo:A (1.655) BS02 SAH 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447257 6bxo:B (1.655) BS01 SF4 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447258 6bxo:B (1.655) BS02 SAH 2.5.1.108 GO:0016740 ... A0A062UZ78 29590073
    447259 6bxp:A (1.45) BS01 peptide ? N/A P01889 29437277
    447260 6bxq:B (1.58) BS01 peptide ? N/A P01889 29437277
    447261 6bxt:A (2.7) BS01 APR ? N/A A0A193AUK9 29505111
    447262 6bxt:B (2.7) BS01 APR ? N/A A0A193AUK9 29505111
    447263 6bxu:A (3.79) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    447264 6bxu:A (3.79) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    447265 6bxu:A (3.79) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    447266 6bxu:A (3.79) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    447267 6bxu:A (3.79) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    447268 6bxu:B (3.79) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    447269 6bxu:B (3.79) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    447270 6bxu:B (3.79) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    447271 6bxu:B (3.79) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    447272 6bxu:B (3.79) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    447273 6bxw:A (1.65) BS01 APR ? N/A A0A140H546 29505111
    447274 6bxy:A (1.82) BS01 EEV ? GO:0005634 ... O00255 29738674 BindingDB: IC50=7.5nM, Kd=10.0nM
    447275 6bxz:A (2.09) BS01 CA ? GO:0005509 ... F1SD06 30527337
    447276 6bxz:A (2.09) BS02 CA ? GO:0005509 ... F1SD06 30527337
    447277 6bxz:A (2.09) BS03 CA ? GO:0005509 ... F1SD06 30527337
    447278 6bxz:C (2.09) BS01 CA ? GO:0005509 ... F1SD06 30527337
    447279 6bxz:C (2.09) BS02 CA ? GO:0005509 ... F1SD06 30527337
    447280 6bxz:C (2.09) BS03 CA ? GO:0005509 ... F1SD06 30527337
    447281 6by0:A (2.93) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 29968670
    447282 6by0:B (2.93) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 29968670
    447283 6by0:C (2.93) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 29968670
    447284 6by0:D (2.93) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 29968670
    447285 6by1:AB (3.94) BS01 rna ? GO:0000028 ... P0A7V0 30552154
    447286 6by1:AC (3.94) BS01 rna ? GO:0003676 ... P0A7V3 30552154
    447287 6by1:AC (3.94) BS02 rna ? GO:0003676 ... P0A7V3 30552154
    447288 6by1:AD (3.94) BS01 rna ? GO:0000028 ... P0A7V8 30552154
    447289 6by1:AE (3.94) BS01 rna ? GO:0000028 ... P0A7W1 30552154
    447290 6by1:AF (3.94) BS01 rna ? GO:0003735 ... P02358 30552154
    447291 6by1:AG (3.94) BS01 rna ? GO:0000028 ... P02359 30552154
    447292 6by1:AG (3.94) BS02 rna ? GO:0000028 ... P02359 30552154
    447293 6by1:AH (3.94) BS01 rna ? GO:0000028 ... P0A7W7 30552154
    447294 6by1:AI (3.94) BS01 rna ? GO:0000049 ... P0A7X3 30552154
    447295 6by1:AJ (3.94) BS01 rna ? GO:0000049 ... P0A7R5 30552154
    447296 6by1:AK (3.94) BS01 rna ? GO:0002181 ... P0A7R9 30552154
    447297 6by1:AL (3.94) BS01 rna ? GO:0000049 ... P0A7S3 30552154
    447298 6by1:AM (3.94) BS01 rna ? GO:0000049 ... P0A7S9 30552154
    447299 6by1:AM (3.94) BS02 rna ? GO:0000049 ... P0A7S9 30552154
    447300 6by1:AN (3.94) BS01 rna ? GO:0000028 ... P0AG59 30552154
    447301 6by1:AN (3.94) BS02 MG ? GO:0000028 ... P0AG59 30552154
    447302 6by1:AO (3.94) BS01 rna ? GO:0000028 ... P0ADZ4 30552154
    447303 6by1:AO (3.94) BS02 rna ? GO:0000028 ... P0ADZ4 30552154
    447304 6by1:AP (3.94) BS01 rna ? GO:0000028 ... P0A7T3 30552154
    447305 6by1:AQ (3.94) BS01 rna ? GO:0000028 ... P0AG63 30552154
    447306 6by1:AR (3.94) BS01 rna ? GO:0003735 ... P0A7T7 30552154
    447307 6by1:AS (3.94) BS01 rna ? GO:0003723 ... P0A7U3 30552154
    447308 6by1:AT (3.94) BS01 rna ? GO:0000028 ... P0A7U7 30552154
    447309 6by1:BB (3.94) BS01 rna ? GO:0000028 ... P0A7V0 30552154
    447310 6by1:BB (3.94) BS02 rna ? GO:0000028 ... P0A7V0 30552154
    447311 6by1:BC (3.94) BS01 rna ? GO:0003676 ... P0A7V3 30552154
    447312 6by1:BC (3.94) BS02 rna ? GO:0003676 ... P0A7V3 30552154
    447313 6by1:BD (3.94) BS01 rna ? GO:0000028 ... P0A7V8 30552154
    447314 6by1:BE (3.94) BS01 rna ? GO:0000028 ... P0A7W1 30552154
    447315 6by1:BE (3.94) BS02 rna ? GO:0000028 ... P0A7W1 30552154
    447316 6by1:BF (3.94) BS01 rna ? GO:0003735 ... P02358 30552154
    447317 6by1:BG (3.94) BS01 rna ? GO:0000028 ... P02359 30552154
    447318 6by1:BH (3.94) BS01 rna ? GO:0000028 ... P0A7W7 30552154
    447319 6by1:BI (3.94) BS01 rna ? GO:0000049 ... P0A7X3 30552154
    447320 6by1:BI (3.94) BS02 rna ? GO:0000049 ... P0A7X3 30552154
    447321 6by1:BJ (3.94) BS01 rna ? GO:0000049 ... P0A7R5 30552154
    447322 6by1:BK (3.94) BS01 rna ? GO:0002181 ... P0A7R9 30552154
    447323 6by1:BL (3.94) BS01 rna ? GO:0000049 ... P0A7S3 30552154
    447324 6by1:BM (3.94) BS01 rna ? GO:0000049 ... P0A7S9 30552154
    447325 6by1:BN (3.94) BS01 rna ? GO:0000028 ... P0AG59 30552154
    447326 6by1:BO (3.94) BS01 rna ? GO:0000028 ... P0ADZ4 30552154
    447327 6by1:BO (3.94) BS02 rna ? GO:0000028 ... P0ADZ4 30552154
    447328 6by1:BP (3.94) BS01 rna ? GO:0000028 ... P0A7T3 30552154
    447329 6by1:BQ (3.94) BS01 rna ? GO:0000028 ... P0AG63 30552154
    447330 6by1:BR (3.94) BS01 rna ? GO:0003735 ... P0A7T7 30552154
    447331 6by1:BS (3.94) BS01 rna ? GO:0003723 ... P0A7U3 30552154
    447332 6by1:BT (3.94) BS01 rna ? GO:0000028 ... P0A7U7 30552154
    447333 6by1:C0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    447334 6by1:C1 (3.94) BS01 rna ? GO:0000027 ... P0A7N4 30552154
    447335 6by1:C2 (3.94) BS01 rna ? GO:0000027 ... P0A7N9 30552154
    447336 6by1:C3 (3.94) BS01 rna ? GO:0002181 ... P0A7P5 30552154
    447337 6by1:C4 (3.94) BS01 rna ? GO:0002181 ... P0A7Q1 30552154
    447338 6by1:C4 (3.94) BS02 MG ? GO:0002181 ... P0A7Q1 30552154
    447339 6by1:C5 (3.94) BS01 rna ? GO:0003735 ... P0A7J3 30552154
    447340 6by1:C6 (3.94) BS01 rna ? GO:0002181 ... P0A7Q6 30552154
    447341 6by1:C6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    447342 6by1:CC (3.94) BS01 rna ? GO:0000027 ... P60422 30552154
    447343 6by1:CD (3.94) BS01 rna ? GO:0000027 ... P60438 30552154
    447344 6by1:CE (3.94) BS01 rna ? GO:0001070 ... P60723 30552154
    447345 6by1:CF (3.94) BS01 rna ? GO:0000027 ... P62399 30552154
    447346 6by1:CF (3.94) BS02 rna ? GO:0000027 ... P62399 30552154
    447347 6by1:CF (3.94) BS03 rna ? GO:0000027 ... P62399 30552154
    447348 6by1:CG (3.94) BS01 rna ? GO:0000027 ... P0AG55 30552154
    447349 6by1:CH (3.94) BS01 rna ? GO:0002181 ... P0A7R1 30552154
    447350 6by1:CH (3.94) BS02 rna ? GO:0002181 ... P0A7R1 30552154
    447351 6by1:CI (3.94) BS01 rna ? GO:0003735 ... P0A7J7 30552154
    447352 6by1:CJ (3.94) BS01 rna ? GO:0002181 ... P0AA10 30552154
    447353 6by1:CK (3.94) BS01 rna ? GO:0002181 ... P0ADY3 30552154
    447354 6by1:CK (3.94) BS02 rna ? GO:0002181 ... P0ADY3 30552154
    447355 6by1:CL (3.94) BS01 rna ? GO:0002181 ... P02413 30552154
    447356 6by1:CM (3.94) BS01 rna ? GO:0000027 ... P0ADY7 30552154
    447357 6by1:CM (3.94) BS02 rna ? GO:0000027 ... P0ADY7 30552154
    447358 6by1:CM (3.94) BS03 rna ? GO:0000027 ... P0ADY7 30552154
    447359 6by1:CN (3.94) BS01 rna ? GO:0000027 ... P0AG44 30552154
    447360 6by1:CO (3.94) BS01 rna ? GO:0002181 ... P0C018 30552154
    447361 6by1:CO (3.94) BS02 rna ? GO:0002181 ... P0C018 30552154
    447362 6by1:CP (3.94) BS01 rna ? GO:0000027 ... P0A7K6 30552154
    447363 6by1:CP (3.94) BS02 rna ? GO:0000027 ... P0A7K6 30552154
    447364 6by1:CQ (3.94) BS01 rna ? GO:0000027 ... P0A7L3 30552154
    447365 6by1:CR (3.94) BS01 rna ? GO:0002181 ... P0AG48 30552154
    447366 6by1:CS (3.94) BS01 rna ? GO:0002181 ... P61175 30552154
    447367 6by1:CT (3.94) BS01 rna ? GO:0000027 ... P0ADZ0 30552154
    447368 6by1:CU (3.94) BS01 rna ? GO:0000027 ... P60624 30552154
    447369 6by1:CV (3.94) BS01 rna ? GO:0000027 ... P68919 30552154
    447370 6by1:CW (3.94) BS01 rna ? GO:0003735 ... P0A7L8 30552154
    447371 6by1:CW (3.94) BS02 rna ? GO:0003735 ... P0A7L8 30552154
    447372 6by1:CX (3.94) BS01 rna ? GO:0000027 ... P0A7M2 30552154
    447373 6by1:CY (3.94) BS01 rna ? GO:0000027 ... P0A7M6 30552154
    447374 6by1:CZ (3.94) BS01 rna ? GO:0000027 ... P0AG51 30552154
    447375 6by1:D0 (3.94) BS01 ZN ? GO:0003735 ... P0A7M9 30552154
    447376 6by1:D1 (3.94) BS01 rna ? GO:0000027 ... P0A7N4 30552154
    447377 6by1:D2 (3.94) BS01 rna ? GO:0000027 ... P0A7N9 30552154
    447378 6by1:D3 (3.94) BS01 rna ? GO:0002181 ... P0A7P5 30552154
    447379 6by1:D4 (3.94) BS01 rna ? GO:0002181 ... P0A7Q1 30552154
    447380 6by1:D6 (3.94) BS01 rna ? GO:0002181 ... P0A7Q6 30552154
    447381 6by1:D6 (3.94) BS02 ZN ? GO:0002181 ... P0A7Q6 30552154
    447382 6by1:DC (3.94) BS01 rna ? GO:0000027 ... P60422 30552154
    447383 6by1:DD (3.94) BS01 rna ? GO:0000027 ... P60438 30552154
    447384 6by1:DE (3.94) BS01 rna ? GO:0001070 ... P60723 30552154
    447385 6by1:DF (3.94) BS01 rna ? GO:0000027 ... P62399 30552154
    447386 6by1:DF (3.94) BS02 rna ? GO:0000027 ... P62399 30552154
    447387 6by1:DF (3.94) BS03 rna ? GO:0000027 ... P62399 30552154
    447388 6by1:DG (3.94) BS01 rna ? GO:0000027 ... P0AG55 30552154
    447389 6by1:DH (3.94) BS01 rna ? GO:0002181 ... P0A7R1 30552154
    447390 6by1:DI (3.94) BS01 rna ? GO:0003735 ... P0A7J7 30552154
    447391 6by1:DJ (3.94) BS01 rna ? GO:0002181 ... P0AA10 30552154
    447392 6by1:DK (3.94) BS01 rna ? GO:0002181 ... P0ADY3 30552154
    447393 6by1:DK (3.94) BS02 rna ? GO:0002181 ... P0ADY3 30552154
    447394 6by1:DL (3.94) BS01 rna ? GO:0002181 ... P02413 30552154
    447395 6by1:DM (3.94) BS01 rna ? GO:0000027 ... P0ADY7 30552154
    447396 6by1:DM (3.94) BS02 rna ? GO:0000027 ... P0ADY7 30552154
    447397 6by1:DM (3.94) BS03 rna ? GO:0000027 ... P0ADY7 30552154
    447398 6by1:DN (3.94) BS01 rna ? GO:0000027 ... P0AG44 30552154
    447399 6by1:DO (3.94) BS01 rna ? GO:0002181 ... P0C018 30552154
    447400 6by1:DO (3.94) BS02 rna ? GO:0002181 ... P0C018 30552154

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).