SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447401 6by1:DP (3.94) BS01 rna ? GO:0000027 ... P0A7K6 30552154
    447402 6by1:DP (3.94) BS02 rna ? GO:0000027 ... P0A7K6 30552154
    447403 6by1:DQ (3.94) BS01 rna ? GO:0000027 ... P0A7L3 30552154
    447404 6by1:DR (3.94) BS01 rna ? GO:0002181 ... P0AG48 30552154
    447405 6by1:DS (3.94) BS01 rna ? GO:0002181 ... P61175 30552154
    447406 6by1:DT (3.94) BS01 rna ? GO:0000027 ... P0ADZ0 30552154
    447407 6by1:DU (3.94) BS01 rna ? GO:0000027 ... P60624 30552154
    447408 6by1:DV (3.94) BS01 rna ? GO:0000027 ... P68919 30552154
    447409 6by1:DW (3.94) BS01 rna ? GO:0003735 ... P0A7L8 30552154
    447410 6by1:DW (3.94) BS02 rna ? GO:0003735 ... P0A7L8 30552154
    447411 6by1:DX (3.94) BS01 rna ? GO:0000027 ... P0A7M2 30552154
    447412 6by1:DY (3.94) BS01 rna ? GO:0000027 ... P0A7M6 30552154
    447413 6by1:DZ (3.94) BS01 rna ? GO:0000027 ... P0AG51 30552154
    447414 6by8:A (1.9) BS01 FNV ? GO:0005634 ... O00255 29738674 BindingDB: IC50=123nM
    447415 6bya:A (2.26) BS01 2LO ? N/A A0A3Q8I8I6 N/A
    447416 6bya:B (2.26) BS01 2LO ? N/A A0A3Q8I8I6 N/A
    447417 6bya:C (2.26) BS01 2LO ? N/A A0A3Q8I8I6 N/A
    447418 6bya:D (2.26) BS01 2LO ? N/A A0A3Q8I8I6 N/A
    447419 6byb:A (1.74) BS01 EC7 ? GO:0005634 ... Q9Y468 N/A
    447420 6bye:A (2.126) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447421 6bye:B (2.126) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447422 6byg:A (1.999) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447423 6byg:B (1.999) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447424 6byi:A (2.2) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447425 6byi:A (2.2) BS02 BMA N/A GO:0004553 ... N/A 29997257
    447426 6byi:A (2.2) BS03 BMA N/A GO:0004553 ... N/A 29997257
    447427 6byi:B (2.2) BS01 BMA N/A GO:0004553 ... N/A 29997257
    447428 6byj:A (2.9) BS01 peptide ? GO:0002842 ... P61981 29784830
    447429 6byj:C (2.9) BS01 peptide ? GO:0002842 ... P61981 29784830
    447430 6byj:D (2.9) BS01 peptide ? GO:0002842 ... P61981 29784830
    447431 6byk:A (3.0) BS01 peptide ? GO:0004860 ... P31946 29784830
    447432 6byk:B (3.0) BS01 peptide ? GO:0004860 ... P31946 29784830
    447433 6byk:C (3.0) BS01 peptide ? GO:0004860 ... P31946 29784830
    447434 6byk:D (3.0) BS01 peptide ? GO:0004860 ... P31946 29784830
    447435 6byl:A (3.35) BS01 peptide ? GO:0002842 ... P61981 29784830
    447436 6byl:C (3.35) BS01 peptide ? GO:0002842 ... P61981 29784830
    447437 6byl:D (3.35) BS01 peptide ? GO:0002842 ... P61981 29784830
    447438 6bym:A (2.2) BS01 HC3 ? N/A P38800 29463678
    447439 6bym:B (2.2) BS01 HC3 ? N/A P38800 29463678
    447440 6byp:A (1.9) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447441 6byp:A (1.9) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447442 6byp:B (1.9) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447443 6byp:B (1.9) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447444 6byr:A (3.661) BS01 ATP 2.7.11.11 GO:0000287 ... P17612
    P25685
    30905674
    447445 6byr:A (3.661) BS02 MG 2.7.11.11 GO:0000287 ... P17612
    P25685
    30905674
    447446 6byr:C (3.661) BS01 ATP 2.7.11.11 GO:0000287 ... P17612
    P25685
    30905674
    447447 6byr:C (3.661) BS02 MG 2.7.11.11 GO:0000287 ... P17612
    P25685
    30905674
    447448 6byt:A (2.2) BS01 83Y 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447449 6byt:A (2.2) BS02 BDP 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447450 6byt:A (2.2) BS03 83Y 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447451 6byt:A (2.2) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447452 6byt:A (2.2) BS05 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447453 6byt:B (2.2) BS01 BDP 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447454 6byt:B (2.2) BS02 83Y 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447455 6byt:B (2.2) BS03 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447456 6byt:B (2.2) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447457 6byu:C (3.6) BS01 ECJ 2.7.7.6 GO:0000345 ... P0A8V2 30012465
    447458 6byu:D (3.6) BS01 ECJ 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447459 6byu:D (3.6) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447460 6byu:D (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447461 6byu:D (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447462 6byu:J (3.6) BS01 ECJ 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447463 6byu:J (3.6) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447464 6byu:J (3.6) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447465 6byu:J (3.6) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 30012465
    447466 6byv:A (-1.00) BS01 CA ? N/A P98155 29965730
    447467 6byv:A (-1.00) BS02 CA ? N/A P98155 29965730
    447468 6byv:A (-1.00) BS03 CA ? N/A P98155 29965730
    447469 6byw:A (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    447470 6byw:B (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    447471 6byw:C (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    447472 6byw:D (2.05) BS01 MG ? GO:0046872 ... A0A161XU12 29381339
    447473 6byx:A (2.208) BS01 BDP 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447474 6byx:A (2.208) BS02 GCD 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447475 6byx:A (2.208) BS03 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447476 6byx:A (2.208) BS04 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447477 6byx:B (2.208) BS01 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447478 6byx:B (2.208) BS02 CA 4.2.2.- GO:0005576 ... A0A109PTH9 29382716
    447479 6byy:A (2.3) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447480 6byy:A (2.3) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447481 6byy:B (2.3) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447482 6byy:B (2.3) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447483 6byy:C (2.3) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447484 6byy:C (2.3) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447485 6byy:D (2.3) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447486 6byy:D (2.3) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447487 6byz:A (2.95625) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 31086331
    447488 6byz:A (2.95625) BS02 J18 3.4.24.56 GO:0001618 ... P14735 31086331
    447489 6byz:B (2.95625) BS01 peptide 3.4.24.56 GO:0001618 ... P14735 31086331
    447490 6byz:B (2.95625) BS02 J18 3.4.24.56 GO:0001618 ... P14735 31086331
    447491 6bz0:A (1.83) BS01 FAD 1.8.1.4 GO:0000166 ... D0CDT4 N/A
    447492 6bz0:B (1.83) BS01 FAD 1.8.1.4 GO:0000166 ... D0CDT4 N/A
    447493 6bz0:C (1.83) BS01 FAD 1.8.1.4 GO:0000166 ... D0CDT4 N/A
    447494 6bz0:D (1.83) BS01 FAD 1.8.1.4 GO:0000166 ... D0CDT4 N/A
    447495 6bz1:A (2.97) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447496 6bz1:A (2.97) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447497 6bz1:B (2.97) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447498 6bz1:B (2.97) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447499 6bz1:C (2.97) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447500 6bz1:C (2.97) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447501 6bz1:D (2.97) BS01 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447502 6bz1:D (2.97) BS02 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447503 6bz1:D (2.97) BS03 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447504 6bz1:D (2.97) BS04 dna ? GO:0000977 ... Q02078
    Q02080
    29477338
    447505 6bz2:A (1.67) BS01 7OA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 29437300
    447506 6bz2:B (1.67) BS01 7OA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 29437300 MOAD: Ki=14pM
    447507 6bz3:A (2.497) BS01 peptide 2.7.10.2 GO:0004713 ... P34152 29479476
    447508 6bz3:A (2.497) BS02 peptide 2.7.10.2 GO:0004713 ... P34152 29479476
    447509 6bz3:A (2.497) BS03 CA 2.7.10.2 GO:0004713 ... P34152 29479476
    447510 6bz3:C (2.497) BS01 peptide 2.7.10.2 GO:0004713 ... P34152 29479476
    447511 6bz3:C (2.497) BS02 peptide 2.7.10.2 GO:0004713 ... P34152 29479476
    447512 6bz3:C (2.497) BS03 CA 2.7.10.2 GO:0004713 ... P34152 29479476
    447513 6bz4:A (2.4) BS01 BMA ? N/A P0DOX5 29794155
    447514 6bz4:B (2.4) BS01 BMA ? N/A P0DOX5 29794155
    447515 6bz6:QB (3.18) BS01 rna ? GO:0003735 ... P80371 30476222
    447516 6bz6:QC (3.18) BS01 rna ? GO:0003676 ... P80372 30476222
    447517 6bz6:QC (3.18) BS02 MG ? GO:0003676 ... P80372 30476222
    447518 6bz6:QD (3.18) BS01 rna ? GO:0003723 ... P80373 30476222
    447519 6bz6:QD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447520 6bz6:QE (3.18) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447521 6bz6:QF (3.18) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447522 6bz6:QG (3.18) BS01 rna ? GO:0000049 ... P17291 30476222
    447523 6bz6:QH (3.18) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447524 6bz6:QI (3.18) BS01 rna ? GO:0000049 ... P80374 30476222
    447525 6bz6:QI (3.18) BS02 rna ? GO:0000049 ... P80374 30476222
    447526 6bz6:QJ (3.18) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    447527 6bz6:QJ (3.18) BS02 MG ? GO:0000049 ... Q5SHN7 30476222
    447528 6bz6:QK (3.18) BS01 rna ? GO:0003735 ... P80376 30476222
    447529 6bz6:QL (3.18) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447530 6bz6:QM (3.18) BS01 rna ? GO:0000049 ... P80377 30476222
    447531 6bz6:QM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    447532 6bz6:QN (3.18) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447533 6bz6:QN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447534 6bz6:QO (3.18) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447535 6bz6:QO (3.18) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447536 6bz6:QP (3.18) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447537 6bz6:QQ (3.18) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447538 6bz6:QR (3.18) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447539 6bz6:QS (3.18) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447540 6bz6:QT (3.18) BS01 rna ? GO:0003723 ... P80380 30476222
    447541 6bz6:R0 (3.18) BS01 rna ? GO:0003735 ... P60493 30476222
    447542 6bz6:R0 (3.18) BS02 rna ? GO:0003735 ... P60493 30476222
    447543 6bz6:R0 (3.18) BS03 rna ? GO:0003735 ... P60493 30476222
    447544 6bz6:R1 (3.18) BS01 rna ? GO:0003735 ... P60494 30476222
    447545 6bz6:R2 (3.18) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447546 6bz6:R3 (3.18) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447547 6bz6:R3 (3.18) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    447548 6bz6:R4 (3.18) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447549 6bz6:R4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    447550 6bz6:R5 (3.18) BS01 rna ? GO:0003735 ... P80339 30476222
    447551 6bz6:R5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    447552 6bz6:R6 (3.18) BS01 rna ? GO:0000049 ... P35871 30476222
    447553 6bz6:R6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    447554 6bz6:R7 (3.18) BS01 rna ? GO:0003735 ... P80340 30476222
    447555 6bz6:R8 (3.18) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447556 6bz6:R9 (3.18) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447557 6bz6:R9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    447558 6bz6:RD (3.18) BS01 rna ? GO:0002181 ... P60405 30476222
    447559 6bz6:RD (3.18) BS02 rna ? GO:0002181 ... P60405 30476222
    447560 6bz6:RE (3.18) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447561 6bz6:RE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447562 6bz6:RE (3.18) BS03 MG ? GO:0003735 ... Q5SHN8 30476222
    447563 6bz6:RF (3.18) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447564 6bz6:RG (3.18) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447565 6bz6:RG (3.18) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447566 6bz6:RG (3.18) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447567 6bz6:RH (3.18) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447568 6bz6:RI (3.18) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447569 6bz6:RN (3.18) BS01 rna ? GO:0003729 ... P60488 30476222
    447570 6bz6:RO (3.18) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447571 6bz6:RO (3.18) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447572 6bz6:RP (3.18) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    447573 6bz6:RP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    447574 6bz6:RQ (3.18) BS01 rna ? GO:0000049 ... P60489 30476222
    447575 6bz6:RQ (3.18) BS02 rna ? GO:0000049 ... P60489 30476222
    447576 6bz6:RQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    447577 6bz6:RR (3.18) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447578 6bz6:RS (3.18) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447579 6bz6:RS (3.18) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447580 6bz6:RT (3.18) BS01 rna ? GO:0003735 ... P60490 30476222
    447581 6bz6:RT (3.18) BS02 rna ? GO:0003735 ... P60490 30476222
    447582 6bz6:RU (3.18) BS01 rna ? GO:0000027 ... P60491 30476222
    447583 6bz6:RU (3.18) BS02 MG ? GO:0000027 ... P60491 30476222
    447584 6bz6:RV (3.18) BS01 rna ? GO:0003723 ... P60492 30476222
    447585 6bz6:RW (3.18) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447586 6bz6:RX (3.18) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447587 6bz6:RY (3.18) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447588 6bz6:RY (3.18) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    447589 6bz6:RZ (3.18) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447590 6bz6:XB (3.18) BS01 rna ? GO:0003735 ... P80371 30476222
    447591 6bz6:XC (3.18) BS01 rna ? GO:0003676 ... P80372 30476222
    447592 6bz6:XD (3.18) BS01 rna ? GO:0003723 ... P80373 30476222
    447593 6bz6:XD (3.18) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447594 6bz6:XE (3.18) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447595 6bz6:XE (3.18) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    447596 6bz6:XF (3.18) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447597 6bz6:XG (3.18) BS01 rna ? GO:0000049 ... P17291 30476222
    447598 6bz6:XH (3.18) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447599 6bz6:XI (3.18) BS01 rna ? GO:0000049 ... P80374 30476222
    447600 6bz6:XJ (3.18) BS01 rna ? GO:0000049 ... Q5SHN7 30476222

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).