SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447601 6bz6:XK (3.18) BS01 rna ? GO:0003735 ... P80376 30476222
    447602 6bz6:XK (3.18) BS02 MG ? GO:0003735 ... P80376 30476222
    447603 6bz6:XL (3.18) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447604 6bz6:XM (3.18) BS01 rna ? GO:0000049 ... P80377 30476222
    447605 6bz6:XM (3.18) BS02 MG ? GO:0000049 ... P80377 30476222
    447606 6bz6:XM (3.18) BS03 MG ? GO:0000049 ... P80377 30476222
    447607 6bz6:XM (3.18) BS04 MG ? GO:0000049 ... P80377 30476222
    447608 6bz6:XN (3.18) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447609 6bz6:XN (3.18) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447610 6bz6:XO (3.18) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447611 6bz6:XO (3.18) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447612 6bz6:XP (3.18) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447613 6bz6:XQ (3.18) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447614 6bz6:XQ (3.18) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    447615 6bz6:XR (3.18) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447616 6bz6:XS (3.18) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447617 6bz6:XT (3.18) BS01 rna ? GO:0003723 ... P80380 30476222
    447618 6bz6:Y0 (3.18) BS01 rna ? GO:0003735 ... P60493 30476222
    447619 6bz6:Y0 (3.18) BS02 rna ? GO:0003735 ... P60493 30476222
    447620 6bz6:Y1 (3.18) BS01 rna ? GO:0003735 ... P60494 30476222
    447621 6bz6:Y2 (3.18) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447622 6bz6:Y3 (3.18) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447623 6bz6:Y3 (3.18) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    447624 6bz6:Y4 (3.18) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447625 6bz6:Y4 (3.18) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    447626 6bz6:Y5 (3.18) BS01 rna ? GO:0003735 ... P80339 30476222
    447627 6bz6:Y5 (3.18) BS02 ZN ? GO:0003735 ... P80339 30476222
    447628 6bz6:Y6 (3.18) BS01 rna ? GO:0000049 ... P35871 30476222
    447629 6bz6:Y6 (3.18) BS02 ZN ? GO:0000049 ... P35871 30476222
    447630 6bz6:Y7 (3.18) BS01 rna ? GO:0003735 ... P80340 30476222
    447631 6bz6:Y8 (3.18) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447632 6bz6:Y9 (3.18) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447633 6bz6:Y9 (3.18) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    447634 6bz6:YD (3.18) BS01 rna ? GO:0002181 ... P60405 30476222
    447635 6bz6:YD (3.18) BS02 rna ? GO:0002181 ... P60405 30476222
    447636 6bz6:YD (3.18) BS03 MG ? GO:0002181 ... P60405 30476222
    447637 6bz6:YE (3.18) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447638 6bz6:YE (3.18) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447639 6bz6:YF (3.18) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447640 6bz6:YG (3.18) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447641 6bz6:YG (3.18) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447642 6bz6:YG (3.18) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447643 6bz6:YH (3.18) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447644 6bz6:YI (3.18) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447645 6bz6:YI (3.18) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    447646 6bz6:YN (3.18) BS01 rna ? GO:0003729 ... P60488 30476222
    447647 6bz6:YO (3.18) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447648 6bz6:YO (3.18) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447649 6bz6:YP (3.18) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    447650 6bz6:YP (3.18) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    447651 6bz6:YQ (3.18) BS01 rna ? GO:0000049 ... P60489 30476222
    447652 6bz6:YQ (3.18) BS02 rna ? GO:0000049 ... P60489 30476222
    447653 6bz6:YQ (3.18) BS03 MG ? GO:0000049 ... P60489 30476222
    447654 6bz6:YR (3.18) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447655 6bz6:YS (3.18) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447656 6bz6:YS (3.18) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447657 6bz6:YT (3.18) BS01 rna ? GO:0003735 ... P60490 30476222
    447658 6bz6:YT (3.18) BS02 rna ? GO:0003735 ... P60490 30476222
    447659 6bz6:YU (3.18) BS01 rna ? GO:0000027 ... P60491 30476222
    447660 6bz6:YV (3.18) BS01 rna ? GO:0003723 ... P60492 30476222
    447661 6bz6:YW (3.18) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447662 6bz6:YX (3.18) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447663 6bz6:YX (3.18) BS02 MG ? GO:0003735 ... Q5SHP0 30476222
    447664 6bz6:YY (3.18) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447665 6bz6:YY (3.18) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    447666 6bz6:YY (3.18) BS03 ZN ? GO:0003723 ... Q5SHP9 30476222
    447667 6bz6:YZ (3.18) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447668 6bz6:YZ (3.18) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    447669 6bz7:QB (3.68) BS01 rna ? GO:0003735 ... P80371 30476222
    447670 6bz7:QC (3.68) BS01 rna ? GO:0003676 ... P80372 30476222
    447671 6bz7:QD (3.68) BS01 rna ? GO:0003723 ... P80373 30476222
    447672 6bz7:QD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447673 6bz7:QE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447674 6bz7:QF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447675 6bz7:QG (3.68) BS01 rna ? GO:0000049 ... P17291 30476222
    447676 6bz7:QG (3.68) BS02 rna ? GO:0000049 ... P17291 30476222
    447677 6bz7:QH (3.68) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447678 6bz7:QI (3.68) BS01 rna ? GO:0000049 ... P80374 30476222
    447679 6bz7:QI (3.68) BS02 rna ? GO:0000049 ... P80374 30476222
    447680 6bz7:QJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    447681 6bz7:QJ (3.68) BS02 rna ? GO:0000049 ... Q5SHN7 30476222
    447682 6bz7:QK (3.68) BS01 rna ? GO:0003735 ... P80376 30476222
    447683 6bz7:QL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447684 6bz7:QM (3.68) BS01 rna ? GO:0000049 ... P80377 30476222
    447685 6bz7:QM (3.68) BS02 rna ? GO:0000049 ... P80377 30476222
    447686 6bz7:QN (3.68) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447687 6bz7:QN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447688 6bz7:QO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447689 6bz7:QO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447690 6bz7:QP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447691 6bz7:QQ (3.68) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447692 6bz7:QR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447693 6bz7:QS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447694 6bz7:QT (3.68) BS01 rna ? GO:0003723 ... P80380 30476222
    447695 6bz7:R0 (3.68) BS01 rna ? GO:0003735 ... P60493 30476222
    447696 6bz7:R0 (3.68) BS02 rna ? GO:0003735 ... P60493 30476222
    447697 6bz7:R1 (3.68) BS01 rna ? GO:0003735 ... P60494 30476222
    447698 6bz7:R2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447699 6bz7:R3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447700 6bz7:R4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447701 6bz7:R5 (3.68) BS01 rna ? GO:0003735 ... P80339 30476222
    447702 6bz7:R5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    447703 6bz7:R6 (3.68) BS01 rna ? GO:0000049 ... P35871 30476222
    447704 6bz7:R6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    447705 6bz7:R7 (3.68) BS01 rna ? GO:0003735 ... P80340 30476222
    447706 6bz7:R8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447707 6bz7:R9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447708 6bz7:R9 (3.68) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    447709 6bz7:RD (3.68) BS01 rna ? GO:0002181 ... P60405 30476222
    447710 6bz7:RE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447711 6bz7:RE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447712 6bz7:RF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447713 6bz7:RF (3.68) BS02 MG ? GO:0003735 ... Q5SHN9 30476222
    447714 6bz7:RG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447715 6bz7:RG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447716 6bz7:RG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447717 6bz7:RH (3.68) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447718 6bz7:RI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447719 6bz7:RN (3.68) BS01 rna ? GO:0003729 ... P60488 30476222
    447720 6bz7:RO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447721 6bz7:RO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447722 6bz7:RP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    447723 6bz7:RQ (3.68) BS01 rna ? GO:0000049 ... P60489 30476222
    447724 6bz7:RQ (3.68) BS02 rna ? GO:0000049 ... P60489 30476222
    447725 6bz7:RQ (3.68) BS03 MG ? GO:0000049 ... P60489 30476222
    447726 6bz7:RR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447727 6bz7:RS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447728 6bz7:RS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447729 6bz7:RT (3.68) BS01 rna ? GO:0003735 ... P60490 30476222
    447730 6bz7:RT (3.68) BS02 rna ? GO:0003735 ... P60490 30476222
    447731 6bz7:RU (3.68) BS01 rna ? GO:0000027 ... P60491 30476222
    447732 6bz7:RU (3.68) BS02 MG ? GO:0000027 ... P60491 30476222
    447733 6bz7:RV (3.68) BS01 rna ? GO:0003723 ... P60492 30476222
    447734 6bz7:RW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447735 6bz7:RX (3.68) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447736 6bz7:RY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447737 6bz7:RY (3.68) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    447738 6bz7:RZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447739 6bz7:RZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    447740 6bz7:XB (3.68) BS01 rna ? GO:0003735 ... P80371 30476222
    447741 6bz7:XC (3.68) BS01 rna ? GO:0003676 ... P80372 30476222
    447742 6bz7:XD (3.68) BS01 rna ? GO:0003723 ... P80373 30476222
    447743 6bz7:XD (3.68) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447744 6bz7:XE (3.68) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447745 6bz7:XE (3.68) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    447746 6bz7:XF (3.68) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447747 6bz7:XG (3.68) BS01 rna ? GO:0000049 ... P17291 30476222
    447748 6bz7:XG (3.68) BS02 rna ? GO:0000049 ... P17291 30476222
    447749 6bz7:XH (3.68) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447750 6bz7:XI (3.68) BS01 rna ? GO:0000049 ... P80374 30476222
    447751 6bz7:XJ (3.68) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    447752 6bz7:XK (3.68) BS01 rna ? GO:0003735 ... P80376 30476222
    447753 6bz7:XK (3.68) BS02 MG ? GO:0003735 ... P80376 30476222
    447754 6bz7:XL (3.68) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447755 6bz7:XM (3.68) BS01 rna ? GO:0000049 ... P80377 30476222
    447756 6bz7:XM (3.68) BS02 rna ? GO:0000049 ... P80377 30476222
    447757 6bz7:XM (3.68) BS03 MG ? GO:0000049 ... P80377 30476222
    447758 6bz7:XM (3.68) BS04 MG ? GO:0000049 ... P80377 30476222
    447759 6bz7:XM (3.68) BS05 MG ? GO:0000049 ... P80377 30476222
    447760 6bz7:XN (3.68) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447761 6bz7:XN (3.68) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447762 6bz7:XO (3.68) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447763 6bz7:XO (3.68) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447764 6bz7:XP (3.68) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447765 6bz7:XQ (3.68) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447766 6bz7:XQ (3.68) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    447767 6bz7:XR (3.68) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447768 6bz7:XS (3.68) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447769 6bz7:XT (3.68) BS01 rna ? GO:0003723 ... P80380 30476222
    447770 6bz7:Y0 (3.68) BS01 rna ? GO:0003735 ... P60493 30476222
    447771 6bz7:Y0 (3.68) BS02 rna ? GO:0003735 ... P60493 30476222
    447772 6bz7:Y1 (3.68) BS01 rna ? GO:0003735 ... P60494 30476222
    447773 6bz7:Y2 (3.68) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447774 6bz7:Y3 (3.68) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447775 6bz7:Y3 (3.68) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    447776 6bz7:Y4 (3.68) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447777 6bz7:Y5 (3.68) BS01 rna ? GO:0003735 ... P80339 30476222
    447778 6bz7:Y5 (3.68) BS02 ZN ? GO:0003735 ... P80339 30476222
    447779 6bz7:Y6 (3.68) BS01 rna ? GO:0000049 ... P35871 30476222
    447780 6bz7:Y6 (3.68) BS02 ZN ? GO:0000049 ... P35871 30476222
    447781 6bz7:Y7 (3.68) BS01 rna ? GO:0003735 ... P80340 30476222
    447782 6bz7:Y8 (3.68) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447783 6bz7:Y9 (3.68) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447784 6bz7:Y9 (3.68) BS02 MG ? GO:0003735 ... Q5SHR2 30476222
    447785 6bz7:YD (3.68) BS01 rna ? GO:0002181 ... P60405 30476222
    447786 6bz7:YD (3.68) BS02 rna ? GO:0002181 ... P60405 30476222
    447787 6bz7:YD (3.68) BS03 MG ? GO:0002181 ... P60405 30476222
    447788 6bz7:YE (3.68) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447789 6bz7:YE (3.68) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447790 6bz7:YF (3.68) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447791 6bz7:YG (3.68) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447792 6bz7:YG (3.68) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447793 6bz7:YG (3.68) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447794 6bz7:YH (3.68) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447795 6bz7:YI (3.68) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447796 6bz7:YI (3.68) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    447797 6bz7:YN (3.68) BS01 rna ? GO:0003729 ... P60488 30476222
    447798 6bz7:YO (3.68) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447799 6bz7:YO (3.68) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447800 6bz7:YP (3.68) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).