SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    447801 6bz7:YP (3.68) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    447802 6bz7:YQ (3.68) BS01 rna ? GO:0000049 ... P60489 30476222
    447803 6bz7:YQ (3.68) BS02 rna ? GO:0000049 ... P60489 30476222
    447804 6bz7:YR (3.68) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447805 6bz7:YS (3.68) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447806 6bz7:YS (3.68) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447807 6bz7:YT (3.68) BS01 rna ? GO:0003735 ... P60490 30476222
    447808 6bz7:YT (3.68) BS02 rna ? GO:0003735 ... P60490 30476222
    447809 6bz7:YU (3.68) BS01 rna ? GO:0000027 ... P60491 30476222
    447810 6bz7:YV (3.68) BS01 rna ? GO:0003723 ... P60492 30476222
    447811 6bz7:YW (3.68) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447812 6bz7:YX (3.68) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447813 6bz7:YX (3.68) BS02 MG ? GO:0003735 ... Q5SHP0 30476222
    447814 6bz7:YY (3.68) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447815 6bz7:YY (3.68) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    447816 6bz7:YZ (3.68) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447817 6bz7:YZ (3.68) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    447818 6bz8:QB (3.74) BS01 rna ? GO:0003735 ... P80371 30476222
    447819 6bz8:QC (3.74) BS01 rna ? GO:0003676 ... P80372 30476222
    447820 6bz8:QC (3.74) BS02 MG ? GO:0003676 ... P80372 30476222
    447821 6bz8:QD (3.74) BS01 rna ? GO:0003723 ... P80373 30476222
    447822 6bz8:QD (3.74) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447823 6bz8:QE (3.74) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447824 6bz8:QF (3.74) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447825 6bz8:QF (3.74) BS02 MG ? GO:0003735 ... Q5SLP8 30476222
    447826 6bz8:QG (3.74) BS01 rna ? GO:0000049 ... P17291 30476222
    447827 6bz8:QG (3.74) BS02 rna ? GO:0000049 ... P17291 30476222
    447828 6bz8:QH (3.74) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447829 6bz8:QI (3.74) BS01 rna ? GO:0000049 ... P80374 30476222
    447830 6bz8:QI (3.74) BS02 rna ? GO:0000049 ... P80374 30476222
    447831 6bz8:QJ (3.74) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    447832 6bz8:QJ (3.74) BS02 rna ? GO:0000049 ... Q5SHN7 30476222
    447833 6bz8:QJ (3.74) BS03 MG ? GO:0000049 ... Q5SHN7 30476222
    447834 6bz8:QK (3.74) BS01 rna ? GO:0003735 ... P80376 30476222
    447835 6bz8:QL (3.74) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447836 6bz8:QM (3.74) BS01 rna ? GO:0000049 ... P80377 30476222
    447837 6bz8:QM (3.74) BS02 MG ? GO:0000049 ... P80377 30476222
    447838 6bz8:QN (3.74) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447839 6bz8:QN (3.74) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447840 6bz8:QO (3.74) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447841 6bz8:QO (3.74) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447842 6bz8:QP (3.74) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447843 6bz8:QQ (3.74) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447844 6bz8:QR (3.74) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447845 6bz8:QS (3.74) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447846 6bz8:QT (3.74) BS01 rna ? GO:0003723 ... P80380 30476222
    447847 6bz8:R0 (3.74) BS01 rna ? GO:0003735 ... P60493 30476222
    447848 6bz8:R0 (3.74) BS02 rna ? GO:0003735 ... P60493 30476222
    447849 6bz8:R0 (3.74) BS03 rna ? GO:0003735 ... P60493 30476222
    447850 6bz8:R1 (3.74) BS01 rna ? GO:0003735 ... P60494 30476222
    447851 6bz8:R2 (3.74) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447852 6bz8:R3 (3.74) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447853 6bz8:R3 (3.74) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    447854 6bz8:R4 (3.74) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447855 6bz8:R4 (3.74) BS02 ZN ? GO:0003735 ... Q5SJE1 30476222
    447856 6bz8:R5 (3.74) BS01 rna ? GO:0003735 ... P80339 30476222
    447857 6bz8:R5 (3.74) BS02 ZN ? GO:0003735 ... P80339 30476222
    447858 6bz8:R6 (3.74) BS01 rna ? GO:0000049 ... P35871 30476222
    447859 6bz8:R6 (3.74) BS02 ZN ? GO:0000049 ... P35871 30476222
    447860 6bz8:R7 (3.74) BS01 rna ? GO:0003735 ... P80340 30476222
    447861 6bz8:R8 (3.74) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447862 6bz8:R9 (3.74) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447863 6bz8:R9 (3.74) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    447864 6bz8:RD (3.74) BS01 rna ? GO:0002181 ... P60405 30476222
    447865 6bz8:RD (3.74) BS02 rna ? GO:0002181 ... P60405 30476222
    447866 6bz8:RD (3.74) BS03 MG ? GO:0002181 ... P60405 30476222
    447867 6bz8:RE (3.74) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447868 6bz8:RE (3.74) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447869 6bz8:RF (3.74) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447870 6bz8:RG (3.74) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447871 6bz8:RG (3.74) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447872 6bz8:RG (3.74) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447873 6bz8:RH (3.74) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447874 6bz8:RI (3.74) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447875 6bz8:RN (3.74) BS01 rna ? GO:0003729 ... P60488 30476222
    447876 6bz8:RO (3.74) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447877 6bz8:RO (3.74) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447878 6bz8:RP (3.74) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    447879 6bz8:RP (3.74) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    447880 6bz8:RQ (3.74) BS01 rna ? GO:0000049 ... P60489 30476222
    447881 6bz8:RQ (3.74) BS02 rna ? GO:0000049 ... P60489 30476222
    447882 6bz8:RQ (3.74) BS03 MG ? GO:0000049 ... P60489 30476222
    447883 6bz8:RR (3.74) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447884 6bz8:RS (3.74) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447885 6bz8:RS (3.74) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447886 6bz8:RT (3.74) BS01 rna ? GO:0003735 ... P60490 30476222
    447887 6bz8:RT (3.74) BS02 rna ? GO:0003735 ... P60490 30476222
    447888 6bz8:RU (3.74) BS01 rna ? GO:0000027 ... P60491 30476222
    447889 6bz8:RU (3.74) BS02 MG ? GO:0000027 ... P60491 30476222
    447890 6bz8:RV (3.74) BS01 rna ? GO:0003723 ... P60492 30476222
    447891 6bz8:RW (3.74) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447892 6bz8:RX (3.74) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447893 6bz8:RY (3.74) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447894 6bz8:RY (3.74) BS02 ZN ? GO:0003723 ... Q5SHP9 30476222
    447895 6bz8:RZ (3.74) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447896 6bz8:RZ (3.74) BS02 rna ? GO:0003723 ... Q5SHZ1 30476222
    447897 6bz8:XB (3.74) BS01 rna ? GO:0003735 ... P80371 30476222
    447898 6bz8:XC (3.74) BS01 rna ? GO:0003676 ... P80372 30476222
    447899 6bz8:XD (3.74) BS01 rna ? GO:0003723 ... P80373 30476222
    447900 6bz8:XD (3.74) BS02 SF4 ? GO:0003723 ... P80373 30476222
    447901 6bz8:XE (3.74) BS01 rna ? GO:0003723 ... Q5SHQ5 30476222
    447902 6bz8:XE (3.74) BS02 MG ? GO:0003723 ... Q5SHQ5 30476222
    447903 6bz8:XF (3.74) BS01 rna ? GO:0003735 ... Q5SLP8 30476222
    447904 6bz8:XG (3.74) BS01 rna ? GO:0000049 ... P17291 30476222
    447905 6bz8:XG (3.74) BS02 rna ? GO:0000049 ... P17291 30476222
    447906 6bz8:XH (3.74) BS01 rna ? GO:0003735 ... P0DOY9 30476222
    447907 6bz8:XI (3.74) BS01 rna ? GO:0000049 ... P80374 30476222
    447908 6bz8:XJ (3.74) BS01 rna ? GO:0000049 ... Q5SHN7 30476222
    447909 6bz8:XK (3.74) BS01 rna ? GO:0003735 ... P80376 30476222
    447910 6bz8:XL (3.74) BS01 rna ? GO:0000049 ... Q5SHN3 30476222
    447911 6bz8:XM (3.74) BS01 rna ? GO:0000049 ... P80377 30476222
    447912 6bz8:XM (3.74) BS02 MG ? GO:0000049 ... P80377 30476222
    447913 6bz8:XM (3.74) BS03 MG ? GO:0000049 ... P80377 30476222
    447914 6bz8:XN (3.74) BS01 rna ? GO:0003735 ... P0DOY6 30476222
    447915 6bz8:XN (3.74) BS02 ZN ? GO:0003735 ... P0DOY6 30476222
    447916 6bz8:XO (3.74) BS01 rna ? GO:0003735 ... Q5SJ76 30476222
    447917 6bz8:XO (3.74) BS02 rna ? GO:0003735 ... Q5SJ76 30476222
    447918 6bz8:XP (3.74) BS01 rna ? GO:0003735 ... Q5SJH3 30476222
    447919 6bz8:XQ (3.74) BS01 rna ? GO:0003735 ... P0DOY7 30476222
    447920 6bz8:XQ (3.74) BS02 MG ? GO:0003735 ... P0DOY7 30476222
    447921 6bz8:XR (3.74) BS01 rna ? GO:0003735 ... Q5SLQ0 30476222
    447922 6bz8:XS (3.74) BS01 rna ? GO:0000028 ... Q5SHP2 30476222
    447923 6bz8:XT (3.74) BS01 rna ? GO:0003723 ... P80380 30476222
    447924 6bz8:Y0 (3.74) BS01 rna ? GO:0003735 ... P60493 30476222
    447925 6bz8:Y0 (3.74) BS02 rna ? GO:0003735 ... P60493 30476222
    447926 6bz8:Y1 (3.74) BS01 rna ? GO:0003735 ... P60494 30476222
    447927 6bz8:Y2 (3.74) BS01 rna ? GO:0003735 ... Q5SHP6 30476222
    447928 6bz8:Y3 (3.74) BS01 rna ? GO:0003735 ... Q5SHQ6 30476222
    447929 6bz8:Y3 (3.74) BS02 rna ? GO:0003735 ... Q5SHQ6 30476222
    447930 6bz8:Y4 (3.74) BS01 rna ? GO:0003735 ... Q5SJE1 30476222
    447931 6bz8:Y4 (3.74) BS02 rna ? GO:0003735 ... Q5SJE1 30476222
    447932 6bz8:Y4 (3.74) BS03 ZN ? GO:0003735 ... Q5SJE1 30476222
    447933 6bz8:Y5 (3.74) BS01 rna ? GO:0003735 ... P80339 30476222
    447934 6bz8:Y5 (3.74) BS02 MG ? GO:0003735 ... P80339 30476222
    447935 6bz8:Y5 (3.74) BS03 ZN ? GO:0003735 ... P80339 30476222
    447936 6bz8:Y6 (3.74) BS01 rna ? GO:0000049 ... P35871 30476222
    447937 6bz8:Y6 (3.74) BS02 ZN ? GO:0000049 ... P35871 30476222
    447938 6bz8:Y7 (3.74) BS01 rna ? GO:0003735 ... P80340 30476222
    447939 6bz8:Y8 (3.74) BS01 rna ? GO:0003735 ... Q5SKU1 30476222
    447940 6bz8:Y9 (3.74) BS01 rna ? GO:0003735 ... Q5SHR2 30476222
    447941 6bz8:Y9 (3.74) BS02 ZN ? GO:0003735 ... Q5SHR2 30476222
    447942 6bz8:YD (3.74) BS01 rna ? GO:0002181 ... P60405 30476222
    447943 6bz8:YD (3.74) BS02 rna ? GO:0002181 ... P60405 30476222
    447944 6bz8:YD (3.74) BS03 MG ? GO:0002181 ... P60405 30476222
    447945 6bz8:YE (3.74) BS01 rna ? GO:0003735 ... Q5SHN8 30476222
    447946 6bz8:YE (3.74) BS02 MG ? GO:0003735 ... Q5SHN8 30476222
    447947 6bz8:YF (3.74) BS01 rna ? GO:0003735 ... Q5SHN9 30476222
    447948 6bz8:YG (3.74) BS01 rna ? GO:0000049 ... Q5SHQ0 30476222
    447949 6bz8:YG (3.74) BS02 rna ? GO:0000049 ... Q5SHQ0 30476222
    447950 6bz8:YG (3.74) BS03 rna ? GO:0000049 ... Q5SHQ0 30476222
    447951 6bz8:YH (3.74) BS01 rna ? GO:0002181 ... P0DOY8 30476222
    447952 6bz8:YI (3.74) BS01 rna ? GO:0003735 ... Q5SLQ1 30476222
    447953 6bz8:YI (3.74) BS02 rna ? GO:0003735 ... Q5SLQ1 30476222
    447954 6bz8:YN (3.74) BS01 rna ? GO:0003729 ... P60488 30476222
    447955 6bz8:YO (3.74) BS01 rna ? GO:0003735 ... Q5SHP8 30476222
    447956 6bz8:YO (3.74) BS02 rna ? GO:0003735 ... Q5SHP8 30476222
    447957 6bz8:YP (3.74) BS01 rna ? GO:0003735 ... Q5SHQ7 30476222
    447958 6bz8:YP (3.74) BS02 MG ? GO:0003735 ... Q5SHQ7 30476222
    447959 6bz8:YP (3.74) BS03 MG ? GO:0003735 ... Q5SHQ7 30476222
    447960 6bz8:YQ (3.74) BS01 rna ? GO:0000049 ... P60489 30476222
    447961 6bz8:YQ (3.74) BS02 rna ? GO:0000049 ... P60489 30476222
    447962 6bz8:YQ (3.74) BS03 MG ? GO:0000049 ... P60489 30476222
    447963 6bz8:YR (3.74) BS01 rna ? GO:0003735 ... Q9Z9H5 30476222
    447964 6bz8:YS (3.74) BS01 rna ? GO:0003735 ... Q5SHQ4 30476222
    447965 6bz8:YS (3.74) BS02 rna ? GO:0003735 ... Q5SHQ4 30476222
    447966 6bz8:YT (3.74) BS01 rna ? GO:0003735 ... P60490 30476222
    447967 6bz8:YT (3.74) BS02 rna ? GO:0003735 ... P60490 30476222
    447968 6bz8:YU (3.74) BS01 rna ? GO:0000027 ... P60491 30476222
    447969 6bz8:YV (3.74) BS01 rna ? GO:0003723 ... P60492 30476222
    447970 6bz8:YW (3.74) BS01 rna ? GO:0003735 ... Q5SHP3 30476222
    447971 6bz8:YX (3.74) BS01 rna ? GO:0003735 ... Q5SHP0 30476222
    447972 6bz8:YX (3.74) BS02 MG ? GO:0003735 ... Q5SHP0 30476222
    447973 6bz8:YX (3.74) BS03 MG ? GO:0003735 ... Q5SHP0 30476222
    447974 6bz8:YY (3.74) BS01 rna ? GO:0003723 ... Q5SHP9 30476222
    447975 6bz8:YY (3.74) BS02 MG ? GO:0003723 ... Q5SHP9 30476222
    447976 6bz8:YY (3.74) BS03 ZN ? GO:0003723 ... Q5SHP9 30476222
    447977 6bz8:YZ (3.74) BS01 rna ? GO:0003723 ... Q5SHZ1 30476222
    447978 6bz9:A (1.796) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 29891674
    447979 6bz9:B (1.796) BS01 peptide 3.4.22.36 GO:0004197 ... P29466 29891674
    447980 6bza:A (2.6) BS01 13X 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447981 6bza:A (2.6) BS02 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447982 6bza:B (2.6) BS01 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447983 6bza:B (2.6) BS02 13X 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447984 6bza:C (2.6) BS01 13X 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447985 6bzc:A (2.05) BS01 G6P 5.3.1.9 GO:0004347 ... A0A077EQ93 N/A
    447986 6bzc:B (2.05) BS01 G6P 5.3.1.9 GO:0004347 ... A0A077EQ93 N/A
    447987 6bzd:A (2.67) BS01 peptide ? GO:0002842 ... P61981 29784830
    447988 6bzd:B (2.67) BS01 peptide ? GO:0002842 ... P61981 29784830
    447989 6bzn:D (1.8) BS01 CA 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447990 6bzo:C (3.38) BS01 FI8 2.7.7.6 GO:0000428 ... P9WGY9 29480804
    447991 6bzo:D (3.38) BS01 FI8 2.7.7.6 GO:0000287 ... P9WGY7 29480804
    447992 6bzo:D (3.38) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 29480804
    447993 6bzo:D (3.38) BS03 ZN 2.7.7.6 GO:0000287 ... P9WGY7 29480804
    447994 6bzo:D (3.38) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 29480804
    447995 6bzo:F (3.38) BS01 dna ? GO:0003677 ... P9WGI1 29480804
    447996 6bzo:F (3.38) BS02 dna ? GO:0003677 ... P9WGI1 29480804
    447997 6bzq:A (2.75) BS01 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447998 6bzq:B (2.75) BS01 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    447999 6bzq:C (2.75) BS01 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712
    448000 6bzq:D (2.75) BS01 FAD 3.8.1.1 GO:0000166 ... Q4KCZ3 30890712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).