SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448201 6c0y:H (1.66) BS03 peptide ? N/A A0A3F2YLX1 30177849
    448202 6c0z:A (1.83) BS01 21H ? GO:0005737 ... P0DX96 N/A
    448203 6c0z:C (1.83) BS01 21H ? GO:0005737 ... P0DX96 N/A
    448204 6c0z:D (1.83) BS01 21H ? GO:0005737 ... P0DX96 N/A
    448205 6c10:A (1.399) BS01 MAN ? GO:0005509 ... Q99PJ1 30070639
    448206 6c12:A (2.15) BS01 FAD 1.3.5.1 GO:0000104 ... P0AC41 29514959
    448207 6c12:B (2.15) BS01 FAD 1.3.5.1 GO:0000104 ... P0AC41 29514959
    448208 6c17:A (1.1) BS01 DNX 5.3.3.1 GO:0004769 ... P07445 29990421
    448209 6c18:A (2.3) BS01 YY5 2.7.10.1 GO:0004672 ... P11362 N/A
    448210 6c18:B (2.3) BS01 YY5 2.7.10.1 GO:0004672 ... P11362 N/A
    448211 6c19:A (2.12) BS01 YY7 2.7.10.1 GO:0004672 ... P11362 N/A BindingDB: IC50=2.3nM
    448212 6c19:B (2.12) BS01 YY7 2.7.10.1 GO:0004672 ... P11362 N/A BindingDB: IC50=2.3nM
    448213 6c1a:A (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448214 6c1a:A (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448215 6c1a:B (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448216 6c1a:B (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448217 6c1a:E (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448218 6c1a:E (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448219 6c1a:F (2.05) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448220 6c1a:F (2.05) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448221 6c1b:A (2.0) BS01 YY4 2.7.10.1 GO:0004672 ... P11362 N/A
    448222 6c1b:B (2.0) BS01 YY4 2.7.10.1 GO:0004672 ... P11362 N/A
    448223 6c1c:A (2.15) BS01 YY6 2.7.10.1 GO:0004672 ... P11362 N/A
    448224 6c1c:B (2.15) BS01 YY6 2.7.10.1 GO:0004672 ... P11362 N/A
    448225 6c1d:A (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448226 6c1d:B (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448227 6c1d:C (3.2) BS01 peptide 3.6.4.- GO:0000287 ... P68135 29358376
    448228 6c1d:C (3.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448229 6c1d:D (3.2) BS01 peptide 3.6.4.- GO:0000287 ... P68135 29358376
    448230 6c1d:D (3.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448231 6c1d:E (3.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448232 6c1d:P (3.2) BS01 ADP ? GO:0003774 ... Q05096 29358376
    448233 6c1e:A (2.86) BS01 BNC ? GO:0001518 ... A8EVM5 29769724
    448234 6c1e:B (2.86) BS01 UHH ? GO:0001518 ... A8EVM5 29769724
    448235 6c1g:A (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448236 6c1g:A (3.8) BS02 MG 3.6.4.- GO:0000287 ... P68135 29358376
    448237 6c1g:B (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448238 6c1g:B (3.8) BS02 MG 3.6.4.- GO:0000287 ... P68135 29358376
    448239 6c1g:C (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448240 6c1g:C (3.8) BS02 MG 3.6.4.- GO:0000287 ... P68135 29358376
    448241 6c1g:D (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448242 6c1g:E (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448243 6c1g:P (3.8) BS01 ADP ? GO:0003774 ... Q05096 29358376
    448244 6c1h:A (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448245 6c1h:B (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448246 6c1h:C (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448247 6c1h:D (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448248 6c1h:E (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 29358376
    448249 6c1i:A (2.26) BS01 EEY ? GO:0003677 ... P37231 30409975 MOAD: ic50=85nM
    BindingDB: IC50=1000nM
    448250 6c1i:A (2.26) BS02 KNA ? GO:0003677 ... P37231 30409975
    448251 6c1i:B (2.26) BS01 EEY ? GO:0003677 ... P37231 30409975 MOAD: ic50=85nM
    BindingDB: IC50=1000nM
    448252 6c1i:B (2.26) BS02 KNA ? GO:0003677 ... P37231 30409975
    448253 6c1j:A (1.063) BS01 MG 5.3.3.1 GO:0004769 ... P07445 29990421
    448254 6c1j:A (1.063) BS02 DNX 5.3.3.1 GO:0004769 ... P07445 29990421
    448255 6c1k:A (2.7) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    448256 6c1k:B (2.7) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    448257 6c1k:B (2.7) BS02 NA ? GO:0001518 ... A8EVM5 29769724
    448258 6c1m:A (2.518) BS01 1N7 ? GO:0001518 ... A8EVM5 29769724
    448259 6c1m:A (2.518) BS02 1N7 ? GO:0001518 ... A8EVM5 29769724
    448260 6c1m:A (2.518) BS03 1N7 ? GO:0001518 ... A8EVM5 29769724
    448261 6c1m:A (2.518) BS04 MGX ? GO:0001518 ... A8EVM5 29769724
    448262 6c1m:A (2.518) BS05 NA ? GO:0001518 ... A8EVM5 29769724
    448263 6c1m:B (2.518) BS01 NA ? GO:0001518 ... A8EVM5 29769724
    448264 6c1m:B (2.518) BS02 1N7 ? GO:0001518 ... A8EVM5 29769724
    448265 6c1m:B (2.518) BS03 1N7 ? GO:0001518 ... A8EVM5 29769724
    448266 6c1m:B (2.518) BS04 1N7 ? GO:0001518 ... A8EVM5 29769724
    448267 6c1m:B (2.518) BS05 MGX ? GO:0001518 ... A8EVM5 29769724
    448268 6c1m:B (2.518) BS06 NA ? GO:0001518 ... A8EVM5 29769724
    448269 6c1o:A (2.29) BS01 MK9 2.7.10.1 GO:0004672 ... P11362 N/A
    448270 6c1o:B (2.29) BS01 MK9 2.7.10.1 GO:0004672 ... P11362 N/A
    448271 6c1q:B (2.9) BS01 peptide ? GO:0004875 ... P0ABE7
    P21730
    29867214
    448272 6c1q:B (2.9) BS02 9P2 ? GO:0004875 ... P0ABE7
    P21730
    29867214
    448273 6c1r:B (2.2) BS01 peptide ? GO:0004875 ... P0ABE7
    P21730
    29867214
    448274 6c1r:B (2.2) BS02 EFD ? GO:0004875 ... P0ABE7
    P21730
    29867214
    448275 6c1s:A (2.31) BS01 EFV 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 29847724 MOAD: Ki=0.004uM
    BindingDB: Ki=3.0nM
    448276 6c1t:A (1.84) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448277 6c1t:A (1.84) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448278 6c1t:D (1.84) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448279 6c1t:D (1.84) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448280 6c1u:A (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448281 6c1u:A (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448282 6c1u:B (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448283 6c1u:B (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448284 6c1u:E (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448285 6c1u:E (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448286 6c1u:F (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448287 6c1u:F (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448288 6c1v:A (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448289 6c1v:A (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448290 6c1v:B (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448291 6c1v:B (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448292 6c1v:E (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448293 6c1v:E (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448294 6c1v:F (2.3) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    448295 6c1v:F (2.3) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    448296 6c1w:A (2.398) BS01 ENJ 5.1.2.1 GO:0016853 ... F9USS9 29489337
    448297 6c1w:B (2.398) BS01 4EY 5.1.2.1 GO:0016853 ... F9USS9 29489337
    448298 6c1w:C (2.398) BS01 4EY 5.1.2.1 GO:0016853 ... F9USS9 29489337
    448299 6c1w:C (2.398) BS02 SO3 5.1.2.1 GO:0016853 ... F9USS9 29489337
    448300 6c1x:A (1.05) BS01 DNX 5.3.3.1 GO:0004769 ... P07445 29990421
    448301 6c1y:A (2.3) BS01 dna ? GO:0003677 ... P51608 31356990
    448302 6c1y:A (2.3) BS02 dna ? GO:0003677 ... P51608 31356990
    448303 6c1y:B (2.3) BS01 dna ? GO:0003677 ... P51608 31356990
    448304 6c1y:B (2.3) BS02 dna ? GO:0003677 ... P51608 31356990
    448305 6c23:A (3.9) BS01 peptide ? GO:0000122 ... Q15022 29348366
    448306 6c23:K (3.9) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 29348366
    448307 6c23:L (3.9) BS01 peptide ? GO:0000122 ... O75530 29348366
    448308 6c23:Q (3.9) BS01 peptide ? GO:0000122 ... Q15022 29348366
    448309 6c24:A (3.5) BS01 peptide ? GO:0000122 ... Q15022 29348366
    448310 6c24:K (3.5) BS01 peptide 2.1.1.356 GO:0000082 ... Q15910 29348366
    448311 6c24:L (3.5) BS01 peptide ? GO:0000122 ... O75530 29348366
    448312 6c24:Q (3.5) BS01 peptide ? GO:0000122 ... Q15022 29348366
    448313 6c25:A (1.9) BS01 GDP 6.3.4.4 GO:0000166 ... Q8RNM2 N/A
    448314 6c25:A (1.9) BS02 MG 6.3.4.4 GO:0000166 ... Q8RNM2 N/A
    448315 6c26:1 (3.5) BS01 EGY 2.4.99.18 GO:0006486 ... P41543 29466327
    448316 6c26:1 (3.5) BS02 EGY 2.4.99.18 GO:0006486 ... P41543 29466327
    448317 6c26:3 (3.5) BS01 EGY 2.4.99.18 N/A P48439 29466327
    448318 6c26:A (3.5) BS01 EGY 2.4.99.18 GO:0004576 ... P39007 29466327
    448319 6c26:A (3.5) BS02 EGY 2.4.99.18 GO:0004576 ... P39007 29466327
    448320 6c26:A (3.5) BS03 EGY 2.4.99.18 GO:0004576 ... P39007 29466327
    448321 6c26:A (3.5) BS04 EGY 2.4.99.18 GO:0004576 ... P39007 29466327
    448322 6c26:B (3.5) BS01 BMA 2.4.99.18 GO:0005789 ... P33767 29466327
    448323 6c28:A (2.09) BS01 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448324 6c28:A (2.09) BS02 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448325 6c28:B (2.09) BS01 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448326 6c28:C (2.09) BS01 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448327 6c28:D (2.09) BS01 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448328 6c28:D (2.09) BS02 WCA ? GO:0003700 ... Q6N8V9 29794028 MOAD: Kd=68uM
    448329 6c2c:A (1.597) BS01 ZN N/A N/A N/A 31636435
    448330 6c2c:A (1.597) BS02 ZN N/A N/A N/A 31636435
    448331 6c2c:B (1.597) BS01 ZN N/A N/A N/A 31636435
    448332 6c2c:B (1.597) BS02 ZN N/A N/A N/A 31636435
    448333 6c2d:A (1.79) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    448334 6c2d:A (1.79) BS02 EH1 ? GO:0004497 ... Q2IU02 N/A
    448335 6c2f:A (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448336 6c2f:A (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448337 6c2f:D (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448338 6c2f:D (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448339 6c2f:G (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448340 6c2f:G (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448341 6c2f:J (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448342 6c2f:J (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448343 6c2f:M (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448344 6c2f:M (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448345 6c2f:P (2.65) BS01 dna ? GO:0003677 ... Q9UBB5 N/A
    448346 6c2f:P (2.65) BS02 dna ? GO:0003677 ... Q9UBB5 N/A
    448347 6c2h:A (1.49) BS01 PLP 4.2.1.22 GO:0004122 ... P32582 29630349
    448348 6c2h:A (1.49) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    448349 6c2i:A (1.95) BS01 EJ7 3.4.23.46 GO:0004190 ... P56817 29426770 MOAD: ic50=0.081uM
    BindingDB: IC50=15nM
    448350 6c2m:A (1.859) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448351 6c2m:A (1.859) BS02 SUE 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448352 6c2m:B (1.859) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448353 6c2m:B (1.859) BS02 SUE 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448354 6c2m:C (1.859) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448355 6c2m:C (1.859) BS02 SUE 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448356 6c2m:D (1.859) BS01 ZN 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448357 6c2m:D (1.859) BS02 SUE 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448358 6c2n:A (1.802) BS01 ZN 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0006508 ... A8DG50 N/A
    448359 6c2n:A (1.802) BS02 TSV 3.4.21.98
    3.6.1.15
    3.6.4.13
    GO:0006508 ... A8DG50 N/A
    448360 6c2o:A (1.179) BS01 TSV 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448361 6c2o:A (1.179) BS02 ZN 3.6.4.13 GO:0006508 ... C1KIK8 N/A
    448362 6c2q:A (2.17) BS01 EVM 4.2.1.22 GO:0004122 ... P32582 29630349
    448363 6c2q:A (2.17) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    448364 6c2r:A (1.96) BS01 EG7 2.7.11.1 GO:0000212 ... O14965 30373917 MOAD: Ki=0.8nM
    448365 6c2s:A (2.85) BS01 dna ? GO:0003700 ... Q6N8V9 29794028
    448366 6c2s:A (2.85) BS02 dna ? GO:0003700 ... Q6N8V9 29794028
    448367 6c2s:B (2.85) BS01 dna ? GO:0003700 ... Q6N8V9 29794028
    448368 6c2s:B (2.85) BS02 dna ? GO:0003700 ... Q6N8V9 29794028
    448369 6c2s:C (2.85) BS01 dna ? GO:0003700 ... Q6N8V9 29794028
    448370 6c2s:C (2.85) BS02 dna ? GO:0003700 ... Q6N8V9 29794028
    448371 6c2s:D (2.85) BS01 dna ? GO:0003700 ... Q6N8V9 29794028
    448372 6c2s:D (2.85) BS02 dna ? GO:0003700 ... Q6N8V9 29794028
    448373 6c2t:A (1.73) BS01 EGJ 2.7.11.1 GO:0000212 ... O14965 30373917
    448374 6c2w:A (4.12) BS01 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448375 6c2w:A (4.12) BS02 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448376 6c2w:A (4.12) BS03 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448377 6c2w:A (4.12) BS04 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448378 6c2w:A (4.12) BS05 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448379 6c2w:A (4.12) BS06 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448380 6c2w:B (4.12) BS01 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448381 6c2w:B (4.12) BS02 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448382 6c2w:B (4.12) BS03 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    448383 6c2x:A (2.6) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    448384 6c2x:A (2.6) BS02 EHV 2.3.3.9 GO:0000287 ... P9WK17 30137983
    448385 6c2y:A (2.74) BS01 EJS 2.7.11.15 GO:0001664 ... P25098 29627263
    448386 6c2z:A (1.37) BS01 P1T 4.2.1.22 GO:0004122 ... P32582 29630349
    448387 6c2z:A (1.37) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    448388 6c31:A (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448389 6c31:A (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448390 6c31:B (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448391 6c31:B (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448392 6c31:C (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448393 6c31:C (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448394 6c31:D (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448395 6c31:D (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448396 6c31:E (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448397 6c31:E (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448398 6c31:F (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448399 6c31:F (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448400 6c31:G (3.0) BS01 dna ? GO:0000976 ... O53623 29921668

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).