SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448401 6c31:G (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448402 6c31:H (3.0) BS01 dna ? GO:0000976 ... O53623 29921668
    448403 6c31:H (3.0) BS02 dna ? GO:0000976 ... O53623 29921668
    448404 6c32:A (1.898) BS01 ACO 2.3.1.267 GO:0005737 ... A0R3G9 N/A
    448405 6c33:A (1.8) BS01 MN ? GO:0003677 ... I7GAS0 29635474
    448406 6c33:A (1.8) BS02 MN ? GO:0003677 ... I7GAS0 29635474
    448407 6c33:A (1.8) BS03 MN ? GO:0003677 ... I7GAS0 29635474
    448408 6c34:A (2.2) BS01 MN ? GO:0003677 ... I7GAS0 29635474
    448409 6c34:A (2.2) BS02 MN ? GO:0003677 ... I7GAS0 29635474
    448410 6c35:A (1.803) BS01 MN ? GO:0003677 ... I7GAS0 29635474
    448411 6c35:A (1.803) BS02 MN ? GO:0003677 ... I7GAS0 29635474
    448412 6c36:A (1.9) BS01 MN ? GO:0003677 ... I7GAS0 29635474
    448413 6c36:A (1.9) BS02 MN ? GO:0003677 ... I7GAS0 29635474
    448414 6c36:A (1.9) BS03 PO4 ? GO:0003677 ... I7GAS0 29635474
    448415 6c37:A (1.696) BS01 5NG 2.3.1.267 GO:0005737 ... A0R3G9 N/A
    448416 6c39:A (1.69) BS01 ZN ? GO:0004180 ... A0A0H2WY27 30366985
    448417 6c3a:A (1.53) BS01 EGV ? GO:0009058 ... G8WNK6 29466666
    448418 6c3a:A (1.53) BS02 EGV ? GO:0009058 ... G8WNK6 29466666
    448419 6c3a:B (1.53) BS01 EGV ? GO:0009058 ... G8WNK6 29466666
    448420 6c3a:B (1.53) BS02 EGV ? GO:0009058 ... G8WNK6 29466666
    448421 6c3c:A (1.5) BS01 EJ1 ? GO:0009058 ... G8WNK6 29466666
    448422 6c3c:A (1.5) BS02 EJ1 ? GO:0009058 ... G8WNK6 29466666
    448423 6c3c:B (1.5) BS01 EJ1 ? GO:0009058 ... G8WNK6 29466666
    448424 6c3c:B (1.5) BS02 EJ1 ? GO:0009058 ... G8WNK6 29466666
    448425 6c3d:A (1.55) BS01 EMS ? GO:0009058 ... G8WNK6 29466666
    448426 6c3d:A (1.55) BS02 EMS ? GO:0009058 ... G8WNK6 29466666
    448427 6c3d:B (1.55) BS01 EMS ? GO:0009058 ... G8WNK6 29466666
    448428 6c3d:B (1.55) BS02 EMS ? GO:0009058 ... G8WNK6 29466666
    448429 6c3e:A (2.6) BS01 EJY 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: Ki=63nM
    448430 6c3e:B (2.6) BS01 EJY 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: Ki=63nM
    448431 6c3h:A (1.705) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    448432 6c3h:A (1.705) BS02 EJV ? GO:0004497 ... Q2IU02 N/A
    448433 6c3j:A (1.66) BS01 EJD ? GO:0004497 ... Q2IU02 N/A
    448434 6c3j:A (1.66) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    448435 6c3l:A (1.46092) BS01 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    BindingDB: Kd=36000nM, IC50=27000nM
    448436 6c3l:A (1.46092) BS02 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    BindingDB: Kd=36000nM, IC50=27000nM
    448437 6c3l:B (1.46092) BS01 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    BindingDB: Kd=36000nM, IC50=27000nM
    448438 6c3l:B (1.46092) BS02 EGP ? N/A P41182 29969259 MOAD: Kd=44uM
    BindingDB: Kd=36000nM, IC50=27000nM
    448439 6c3m:A (1.5) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    448440 6c3m:A (1.5) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    448441 6c3n:A (2.53171) BS01 EHY ? N/A P41182 29969259 BindingDB: Kd=3200000nM
    448442 6c3n:A (2.53171) BS02 EHY ? N/A P41182 29969259 BindingDB: Kd=3200000nM
    448443 6c3n:B (2.53171) BS01 EHY ? N/A P41182 29969259 BindingDB: Kd=3200000nM
    448444 6c3n:B (2.53171) BS02 EHY ? N/A P41182 29969259 BindingDB: Kd=3200000nM
    448445 6c3o:A (3.9) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448446 6c3o:A (3.9) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448447 6c3o:B (3.9) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448448 6c3o:B (3.9) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448449 6c3o:C (3.9) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448450 6c3o:C (3.9) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448451 6c3o:D (3.9) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448452 6c3o:D (3.9) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448453 6c3o:E (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448454 6c3o:E (3.9) BS02 MG ? GO:0001508 ... Q09428 29286281
    448455 6c3o:E (3.9) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448456 6c3o:F (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448457 6c3o:F (3.9) BS02 MG ? GO:0001508 ... Q09428 29286281
    448458 6c3o:F (3.9) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448459 6c3o:G (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448460 6c3o:G (3.9) BS02 MG ? GO:0001508 ... Q09428 29286281
    448461 6c3o:G (3.9) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448462 6c3o:H (3.9) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448463 6c3o:H (3.9) BS02 MG ? GO:0001508 ... Q09428 29286281
    448464 6c3o:H (3.9) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448465 6c3p:A (5.6) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448466 6c3p:A (5.6) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448467 6c3p:B (5.6) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448468 6c3p:B (5.6) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448469 6c3p:C (5.6) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448470 6c3p:C (5.6) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448471 6c3p:D (5.6) BS01 ATP ? GO:0001508 ... Q14654 29286281
    448472 6c3p:D (5.6) BS02 ATP ? GO:0001508 ... Q14654 29286281
    448473 6c3p:E (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448474 6c3p:E (5.6) BS02 MG ? GO:0001508 ... Q09428 29286281
    448475 6c3p:E (5.6) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448476 6c3p:F (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448477 6c3p:F (5.6) BS02 MG ? GO:0001508 ... Q09428 29286281
    448478 6c3p:F (5.6) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448479 6c3p:G (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448480 6c3p:G (5.6) BS02 MG ? GO:0001508 ... Q09428 29286281
    448481 6c3p:G (5.6) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448482 6c3p:H (5.6) BS01 ADP ? GO:0001508 ... Q09428 29286281
    448483 6c3p:H (5.6) BS02 MG ? GO:0001508 ... Q09428 29286281
    448484 6c3p:H (5.6) BS03 ATP ? GO:0001508 ... Q09428 29286281
    448485 6c3u:A (1.85) BS01 MN ? GO:0046872 ... A0A0H3GM04 30642934
    448486 6c3u:A (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448487 6c3u:A (1.85) BS03 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448488 6c3u:B (1.85) BS01 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448489 6c3u:B (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448490 6c3u:B (1.85) BS03 MN ? GO:0046872 ... A0A0H3GM04 30642934
    448491 6c3u:C (1.85) BS01 MN ? GO:0046872 ... A0A0H3GM04 30642934
    448492 6c3u:C (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448493 6c3u:C (1.85) BS03 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448494 6c3u:D (1.85) BS01 MN ? GO:0046872 ... A0A0H3GM04 30642934
    448495 6c3u:D (1.85) BS02 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448496 6c3u:D (1.85) BS03 NY2 ? GO:0046872 ... A0A0H3GM04 30642934
    448497 6c3x:A (1.542) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    448498 6c3x:A (1.542) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    448499 6c3y:A (1.542) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    448500 6c3y:A (1.542) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    448501 6c3z:A (1.681) BS01 SF4 1.8.1.2 GO:0000103 ... P17846 29852252
    448502 6c3z:A (1.681) BS02 SRM 1.8.1.2 GO:0000103 ... P17846 29852252
    448503 6c40:B (2.7) BS01 CU ? GO:0000160 ... Q56312 30222354
    448504 6c40:B (2.7) BS02 CU ? GO:0000160 ... Q56312 30222354
    448505 6c40:D (2.7) BS01 CU ? GO:0000160 ... Q56312 30222354
    448506 6c40:D (2.7) BS02 CU ? GO:0000160 ... Q56312 30222354
    448507 6c42:A (1.997) BS01 85M ? N/A P03372 29915250
    448508 6c42:B (1.997) BS01 85M ? N/A P03372 29915250
    448509 6c46:A (1.95) BS01 CA 5.1.3.13 GO:0000271 ... A0A077ENB9 N/A
    448510 6c46:D (1.95) BS01 CA 5.1.3.13 GO:0000271 ... A0A077ENB9 N/A
    448511 6c48:A (2.32) BS01 peptide ? GO:0006351 ... Q5TKA1 30224471
    448512 6c48:B (2.32) BS01 peptide ? GO:0006355 ... Q52LA3 30224471
    448513 6c48:B (2.32) BS02 peptide ? GO:0006355 ... Q52LA3 30224471
    448514 6c48:D (2.32) BS01 peptide ? GO:0006351 ... Q5TKA1 30224471
    448515 6c48:E (2.32) BS01 peptide ? GO:0006355 ... Q52LA3 30224471
    448516 6c48:E (2.32) BS02 peptide ? GO:0006355 ... Q52LA3 30224471
    448517 6c49:A (1.85) BS01 ZN 1.1.1.1 GO:0008270 ... A0A1E3MC83 N/A
    448518 6c49:A (1.85) BS02 ZN 1.1.1.1 GO:0008270 ... A0A1E3MC83 N/A
    448519 6c4a:A (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448520 6c4a:A (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448521 6c4a:A (1.8) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448522 6c4a:B (1.8) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448523 6c4a:B (1.8) BS02 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448524 6c4a:B (1.8) BS03 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448525 6c4a:C (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448526 6c4a:C (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448527 6c4a:C (1.8) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448528 6c4a:D (1.8) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448529 6c4a:D (1.8) BS02 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448530 6c4a:D (1.8) BS03 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448531 6c4a:E (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448532 6c4a:E (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448533 6c4a:F (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448534 6c4a:F (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448535 6c4a:G (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448536 6c4a:G (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448537 6c4a:H (1.8) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448538 6c4a:H (1.8) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448539 6c4c:A (2.2) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448540 6c4c:B (2.2) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448541 6c4c:B (2.2) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448542 6c4c:C (2.2) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448543 6c4c:C (2.2) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448544 6c4c:D (2.2) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448545 6c4c:E (2.2) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448546 6c4c:E (2.2) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448547 6c4c:E (2.2) BS03 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448548 6c4c:F (2.2) BS01 3NP 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448549 6c4c:F (2.2) BS02 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448550 6c4c:G (2.2) BS01 PYR 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448551 6c4c:G (2.2) BS02 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448552 6c4c:H (2.2) BS01 MG 4.1.3.1 GO:0003824 ... P9WKK7 29782144
    448553 6c4d:A (2.52) BS01 EJP 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: IC50=1.3nM, Ki=0.912011nM
    448554 6c4d:B (2.52) BS01 EJP 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: IC50=1.3nM, Ki=0.912011nM
    448555 6c4d:C (2.52) BS01 EJP 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: IC50=1.3nM, Ki=0.912011nM
    448556 6c4d:D (2.52) BS01 EJP 2.7.11.1 GO:0004672 ... Q13546 29485864 BindingDB: IC50=1.3nM, Ki=0.912011nM
    448557 6c4g:A (2.39) BS01 EQG 3.4.23.- GO:0004190 ... A5K302 29800827 MOAD: ic50=0.005uM
    448558 6c4h:C (3.1) BS01 rna ? GO:0000027 ... P60422 29403017
    448559 6c4h:D (3.1) BS01 rna ? GO:0000027 ... P60438 29403017
    448560 6c4h:v (3.1) BS01 rna ? GO:0003747 ... P07012 29403017
    448561 6c4i:0 (3.24) BS01 rna ? GO:0000027 ... P0AG51 29403017
    448562 6c4i:0 (3.24) BS02 rna ? GO:0000027 ... P0AG51 29403017
    448563 6c4i:1 (3.24) BS01 rna ? GO:0002181 ... P0A7M9 29403017
    448564 6c4i:1 (3.24) BS02 ZN ? GO:0002181 ... P0A7M9 29403017
    448565 6c4i:2 (3.24) BS01 rna ? GO:0000027 ... P0A7N4 29403017
    448566 6c4i:3 (3.24) BS01 rna ? GO:0000027 ... P0A7N9 29403017
    448567 6c4i:4 (3.24) BS01 rna ? GO:0002181 ... P0A7P5 29403017
    448568 6c4i:5 (3.24) BS01 rna ? GO:0002181 ... P0A7Q1 29403017
    448569 6c4i:6 (3.24) BS01 rna ? GO:0002181 ... P0A7Q6 29403017
    448570 6c4i:6 (3.24) BS02 ZN ? GO:0002181 ... P0A7Q6 29403017
    448571 6c4i:C (3.24) BS01 rna ? GO:0000027 ... P60422 29403017
    448572 6c4i:C (3.24) BS02 MG ? GO:0000027 ... P60422 29403017
    448573 6c4i:D (3.24) BS01 rna ? GO:0000027 ... P60438 29403017
    448574 6c4i:E (3.24) BS01 rna ? GO:0001070 ... P60723 29403017
    448575 6c4i:F (3.24) BS01 rna ? GO:0000027 ... P62399 29403017
    448576 6c4i:F (3.24) BS02 rna ? GO:0000027 ... P62399 29403017
    448577 6c4i:F (3.24) BS03 rna ? GO:0000027 ... P62399 29403017
    448578 6c4i:G (3.24) BS01 rna ? GO:0000027 ... P0AG55 29403017
    448579 6c4i:H (3.24) BS01 rna ? GO:0002181 ... P0A7R1 29403017
    448580 6c4i:I (3.24) BS01 rna ? GO:0002181 ... P0A7J3 29403017
    448581 6c4i:J (3.24) BS01 rna ? GO:0000027 ... P0A7J7 29403017
    448582 6c4i:K (3.24) BS01 rna ? GO:0002181 ... P0AA10 29403017
    448583 6c4i:L (3.24) BS01 rna ? GO:0002181 ... P0ADY3 29403017
    448584 6c4i:L (3.24) BS02 rna ? GO:0002181 ... P0ADY3 29403017
    448585 6c4i:M (3.24) BS01 rna ? GO:0002181 ... P02413 29403017
    448586 6c4i:N (3.24) BS01 rna ? GO:0000027 ... P0ADY7 29403017
    448587 6c4i:N (3.24) BS02 rna ? GO:0000027 ... P0ADY7 29403017
    448588 6c4i:O (3.24) BS01 rna ? GO:0000027 ... P0AG44 29403017
    448589 6c4i:P (3.24) BS01 rna ? GO:0002181 ... P0C018 29403017
    448590 6c4i:P (3.24) BS02 rna ? GO:0002181 ... P0C018 29403017
    448591 6c4i:Q (3.24) BS01 rna ? GO:0000027 ... P0A7K6 29403017
    448592 6c4i:Q (3.24) BS02 rna ? GO:0000027 ... P0A7K6 29403017
    448593 6c4i:R (3.24) BS01 rna ? GO:0000027 ... P0A7L3 29403017
    448594 6c4i:S (3.24) BS01 rna ? GO:0002181 ... P0AG48 29403017
    448595 6c4i:T (3.24) BS01 rna ? GO:0002181 ... P61175 29403017
    448596 6c4i:U (3.24) BS01 rna ? GO:0000027 ... P0ADZ0 29403017
    448597 6c4i:V (3.24) BS01 rna ? GO:0000027 ... P60624 29403017
    448598 6c4i:W (3.24) BS01 rna ? GO:0000027 ... P68919 29403017
    448599 6c4i:W (3.24) BS02 rna ? GO:0000027 ... P68919 29403017
    448600 6c4i:X (3.24) BS01 rna ? GO:0000027 ... P0A7L8 29403017

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).