SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448601 6c4i:X (3.24) BS02 rna ? GO:0000027 ... P0A7L8 29403017
    448602 6c4i:Y (3.24) BS01 rna ? GO:0000027 ... P0A7M2 29403017
    448603 6c4i:Z (3.24) BS01 rna ? GO:0000027 ... P0A7M6 29403017
    448604 6c4i:b (3.24) BS01 rna ? GO:0000028 ... P0A7V0 29403017
    448605 6c4i:c (3.24) BS01 rna ? GO:0000028 ... P0A7V3 29403017
    448606 6c4i:d (3.24) BS01 rna ? GO:0000028 ... P0A7V8 29403017
    448607 6c4i:d (3.24) BS02 MG ? GO:0000028 ... P0A7V8 29403017
    448608 6c4i:e (3.24) BS01 rna ? GO:0000028 ... P0A7W1 29403017
    448609 6c4i:f (3.24) BS01 rna ? GO:0002181 ... P02358 29403017
    448610 6c4i:g (3.24) BS01 rna ? GO:0000028 ... P02359 29403017
    448611 6c4i:g (3.24) BS02 rna ? GO:0000028 ... P02359 29403017
    448612 6c4i:h (3.24) BS01 rna ? GO:0000028 ... P0A7W7 29403017
    448613 6c4i:i (3.24) BS01 rna ? GO:0000049 ... P0A7X3 29403017
    448614 6c4i:i (3.24) BS02 rna ? GO:0000049 ... P0A7X3 29403017
    448615 6c4i:j (3.24) BS01 rna ? GO:0000049 ... P0A7R5 29403017
    448616 6c4i:k (3.24) BS01 rna ? GO:0002181 ... P0A7R9 29403017
    448617 6c4i:l (3.24) BS01 rna ? GO:0000049 ... P0A7S3 29403017
    448618 6c4i:m (3.24) BS01 rna ? GO:0000049 ... P0A7S9 29403017
    448619 6c4i:m (3.24) BS02 rna ? GO:0000049 ... P0A7S9 29403017
    448620 6c4i:n (3.24) BS01 rna ? GO:0000028 ... P0AG59 29403017
    448621 6c4i:o (3.24) BS01 rna ? GO:0000028 ... P0ADZ4 29403017
    448622 6c4i:o (3.24) BS02 rna ? GO:0000028 ... P0ADZ4 29403017
    448623 6c4i:p (3.24) BS01 rna ? GO:0000028 ... P0A7T3 29403017
    448624 6c4i:q (3.24) BS01 rna ? GO:0000028 ... P0AG63 29403017
    448625 6c4i:r (3.24) BS01 rna ? GO:0003735 ... P0A7T7 29403017
    448626 6c4i:s (3.24) BS01 rna ? GO:0000028 ... P0A7U3 29403017
    448627 6c4i:t (3.24) BS01 rna ? GO:0000028 ... P0A7U7 29403017
    448628 6c4i:u (3.24) BS01 rna ? GO:0000028 ... P68679 29403017
    448629 6c4i:v (3.24) BS01 rna ? GO:0003747 ... P07012 29403017
    448630 6c4i:v (3.24) BS02 rna ? GO:0003747 ... P07012 29403017
    448631 6c4i:v (3.24) BS03 rna ? GO:0003747 ... P07012 29403017
    448632 6c4i:w (3.24) BS01 rna ? GO:0072344 ... P36675 29403017
    448633 6c4i:w (3.24) BS02 rna ? GO:0072344 ... P36675 29403017
    448634 6c4j:A (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448635 6c4j:A (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448636 6c4j:B (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448637 6c4j:B (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448638 6c4j:C (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448639 6c4j:C (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448640 6c4j:D (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448641 6c4j:D (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448642 6c4j:E (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448643 6c4j:E (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448644 6c4j:F (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448645 6c4j:F (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448646 6c4j:G (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448647 6c4j:G (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448648 6c4j:H (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448649 6c4j:H (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448650 6c4j:I (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448651 6c4j:I (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448652 6c4j:J (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448653 6c4j:J (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448654 6c4j:K (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448655 6c4j:K (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448656 6c4j:L (2.53) BS01 NAD 1.1.1.22 GO:0001702 ... O60701 30457329
    448657 6c4j:L (2.53) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 30457329
    448658 6c4m:C (1.94) BS01 NAP 1.5.1.- GO:0016491 ... Q8CKU7 29618515
    448659 6c4n:A (1.95) BS01 NAP 1.5.1.- GO:0005886 ... Q9HUX5 29618515
    448660 6c4n:B (1.95) BS01 NAP 1.5.1.- GO:0005886 ... Q9HUX5 29618515
    448661 6c4p:A (2.3) BS01 PMP 4.2.1.22 GO:0004122 ... P32582 29630349
    448662 6c4p:A (2.3) BS02 CA 4.2.1.22 GO:0004122 ... P32582 29630349
    448663 6c4t:A (2.49) BS01 NA7 1.5.1.52 GO:0016491 ... A0A0H3JT80 29618515
    448664 6c4u:A (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448665 6c4u:B (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448666 6c4u:C (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448667 6c4u:D (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448668 6c4u:E (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448669 6c4u:F (2.6) BS01 peptide 2.7.12.1 N/A P22216 29763736
    448670 6c4v:A (1.9) BS01 ZN 2.3.1.- N/A I6X8D2 N/A
    448671 6c4w:A (2.4) BS01 HEC ? GO:0005739 ... A0A3B6UES8 N/A
    448672 6c55:A (2.09) BS01 MG 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448673 6c55:A (2.09) BS02 NAP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448674 6c55:A (2.09) BS03 EKD 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448675 6c55:A (2.09) BS04 EKD 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448676 6c55:A (2.09) BS05 EKA 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448677 6c55:A (2.09) BS06 NAP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448678 6c55:B (2.09) BS01 NAP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448679 6c55:B (2.09) BS02 EKD 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448680 6c55:B (2.09) BS03 EKD 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448681 6c55:B (2.09) BS04 EKA 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448682 6c55:B (2.09) BS05 MG 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448683 6c55:B (2.09) BS06 NAP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448684 6c56:B (2.8) BS01 VT0 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29
    GO:0003824 ... O95749 30016091 BindingDB: IC50=82nM
    448685 6c57:B (3.5) BS01 FV9 2.5.1.-
    2.5.1.1
    2.5.1.10
    2.5.1.29
    GO:0003824 ... O95749 30016091 BindingDB: IC50=42nM
    448686 6c58:A (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448687 6c58:A (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448688 6c58:B (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448689 6c58:B (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448690 6c58:C (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448691 6c58:C (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448692 6c58:D (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448693 6c58:E (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448694 6c58:F (2.198) BS01 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448695 6c58:F (2.198) BS02 UDX 1.1.1.22 GO:0001702 ... O60701 N/A
    448696 6c5a:A (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448697 6c5a:A (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448698 6c5a:B (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448699 6c5a:B (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448700 6c5a:C (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448701 6c5a:C (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448702 6c5a:D (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448703 6c5a:D (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448704 6c5a:E (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448705 6c5a:E (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448706 6c5a:F (2.3) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448707 6c5a:F (2.3) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448708 6c5b:A (1.42) BS01 SAH 2.1.1.- GO:0002047 ... A0A172J1V3 29510028
    448709 6c5b:B (1.42) BS01 SAH 2.1.1.- GO:0002047 ... A0A172J1V3 29510028
    448710 6c5c:A (1.85) BS01 NAD 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4
    GO:0003856 ... Q5AME2 35512834
    448711 6c5c:B (1.85) BS01 NAD 1.1.1.25
    2.5.1.19
    2.7.1.71
    4.2.1.10
    4.2.3.4
    GO:0003856 ... Q5AME2 35512834
    448712 6c5f:B (1.4) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 29847104 MOAD: Ki=33uM
    448713 6c5l:AB (3.2) BS01 rna ? GO:0003735 ... P80371 29403017
    448714 6c5l:AC (3.2) BS01 rna ? GO:0003676 ... P80372 29403017
    448715 6c5l:AD (3.2) BS01 rna ? GO:0003723 ... P80373 29403017
    448716 6c5l:AE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29403017
    448717 6c5l:AF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29403017
    448718 6c5l:AG (3.2) BS01 rna ? GO:0000049 ... P17291 29403017
    448719 6c5l:AG (3.2) BS02 rna ? GO:0000049 ... P17291 29403017
    448720 6c5l:AH (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29403017
    448721 6c5l:AI (3.2) BS01 rna ? GO:0000049 ... P80374 29403017
    448722 6c5l:AJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29403017
    448723 6c5l:AK (3.2) BS01 rna ? GO:0003735 ... P80376 29403017
    448724 6c5l:AL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29403017
    448725 6c5l:AM (3.2) BS01 rna ? GO:0000049 ... P80377 29403017
    448726 6c5l:AM (3.2) BS02 rna ? GO:0000049 ... P80377 29403017
    448727 6c5l:AN (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29403017
    448728 6c5l:AO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 29403017
    448729 6c5l:AO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 29403017
    448730 6c5l:AP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 29403017
    448731 6c5l:AQ (3.2) BS01 rna ? GO:0003735 ... P0DOY7 29403017
    448732 6c5l:AR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 29403017
    448733 6c5l:AS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 29403017
    448734 6c5l:AT (3.2) BS01 rna ? GO:0003723 ... P80380 29403017
    448735 6c5l:AY (3.2) BS01 rna ? GO:0000049 ... Q5SM01 29403017
    448736 6c5l:AY (3.2) BS02 rna ? GO:0000049 ... Q5SM01 29403017
    448737 6c5l:AY (3.2) BS03 rna ? GO:0000049 ... Q5SM01 29403017
    448738 6c5l:AY (3.2) BS04 rna ? GO:0000049 ... Q5SM01 29403017
    448739 6c5l:B0 (3.2) BS01 rna ? GO:0003735 ... P60493 29403017
    448740 6c5l:B0 (3.2) BS02 rna ? GO:0003735 ... P60493 29403017
    448741 6c5l:B0 (3.2) BS03 rna ? GO:0003735 ... P60493 29403017
    448742 6c5l:B1 (3.2) BS01 rna ? GO:0003735 ... P60494 29403017
    448743 6c5l:B2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 29403017
    448744 6c5l:B3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 29403017
    448745 6c5l:B3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 29403017
    448746 6c5l:B5 (3.2) BS01 rna ? GO:0003735 ... P80339 29403017
    448747 6c5l:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 29403017
    448748 6c5l:B7 (3.2) BS01 rna ? GO:0003735 ... P80340 29403017
    448749 6c5l:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 29403017
    448750 6c5l:B9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 29403017
    448751 6c5l:B9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29403017
    448752 6c5l:BC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 29403017
    448753 6c5l:BD (3.2) BS01 rna ? GO:0002181 ... P60405 29403017
    448754 6c5l:BD (3.2) BS02 MG ? GO:0002181 ... P60405 29403017
    448755 6c5l:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29403017
    448756 6c5l:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29403017
    448757 6c5l:BF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29403017
    448758 6c5l:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29403017
    448759 6c5l:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29403017
    448760 6c5l:BG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 29403017
    448761 6c5l:BH (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29403017
    448762 6c5l:BI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29403017
    448763 6c5l:BJ (3.2) BS01 rna N/A N/A N/A 29403017
    448764 6c5l:BK (3.2) BS01 rna ? GO:0003735 ... Q5SLP6 29403017
    448765 6c5l:BN (3.2) BS01 rna ? GO:0003729 ... P60488 29403017
    448766 6c5l:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29403017
    448767 6c5l:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29403017
    448768 6c5l:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29403017
    448769 6c5l:BP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29403017
    448770 6c5l:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 29403017
    448771 6c5l:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 29403017
    448772 6c5l:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29403017
    448773 6c5l:BS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29403017
    448774 6c5l:BS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29403017
    448775 6c5l:BT (3.2) BS01 rna ? GO:0003735 ... P60490 29403017
    448776 6c5l:BT (3.2) BS02 rna ? GO:0003735 ... P60490 29403017
    448777 6c5l:BU (3.2) BS01 rna ? GO:0000027 ... P60491 29403017
    448778 6c5l:BV (3.2) BS01 rna ? GO:0003723 ... P60492 29403017
    448779 6c5l:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29403017
    448780 6c5l:BX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 29403017
    448781 6c5l:BY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29403017
    448782 6c5l:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29403017
    448783 6c5l:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 29403017
    448784 6c5l:BZ (3.2) BS03 rna ? GO:0003723 ... Q5SHZ1 29403017
    448785 6c5l:CB (3.2) BS01 rna ? GO:0003735 ... P80371 29403017
    448786 6c5l:CC (3.2) BS01 rna ? GO:0003676 ... P80372 29403017
    448787 6c5l:CD (3.2) BS01 rna ? GO:0003723 ... P80373 29403017
    448788 6c5l:CD (3.2) BS02 ZN ? GO:0003723 ... P80373 29403017
    448789 6c5l:CE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29403017
    448790 6c5l:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29403017
    448791 6c5l:CG (3.2) BS01 rna ? GO:0000049 ... P17291 29403017
    448792 6c5l:CG (3.2) BS02 rna ? GO:0000049 ... P17291 29403017
    448793 6c5l:CH (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29403017
    448794 6c5l:CI (3.2) BS01 rna ? GO:0000049 ... P80374 29403017
    448795 6c5l:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29403017
    448796 6c5l:CK (3.2) BS01 rna ? GO:0003735 ... P80376 29403017
    448797 6c5l:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29403017
    448798 6c5l:CM (3.2) BS01 rna ? GO:0000049 ... P80377 29403017
    448799 6c5l:CM (3.2) BS02 rna ? GO:0000049 ... P80377 29403017
    448800 6c5l:CN (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29403017

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).