SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    448801 6c5l:CN (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29403017
    448802 6c5l:CO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 29403017
    448803 6c5l:CO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 29403017
    448804 6c5l:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 29403017
    448805 6c5l:CQ (3.2) BS01 rna ? GO:0003735 ... P0DOY7 29403017
    448806 6c5l:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 29403017
    448807 6c5l:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 29403017
    448808 6c5l:CT (3.2) BS01 rna ? GO:0003723 ... P80380 29403017
    448809 6c5l:CY (3.2) BS01 rna ? GO:0000049 ... Q5SM01 29403017
    448810 6c5l:CY (3.2) BS02 rna ? GO:0000049 ... Q5SM01 29403017
    448811 6c5l:CY (3.2) BS03 rna ? GO:0000049 ... Q5SM01 29403017
    448812 6c5l:CY (3.2) BS04 rna ? GO:0000049 ... Q5SM01 29403017
    448813 6c5l:D0 (3.2) BS01 rna ? GO:0003735 ... P60493 29403017
    448814 6c5l:D0 (3.2) BS02 rna ? GO:0003735 ... P60493 29403017
    448815 6c5l:D0 (3.2) BS03 rna ? GO:0003735 ... P60493 29403017
    448816 6c5l:D1 (3.2) BS01 rna ? GO:0003735 ... P60494 29403017
    448817 6c5l:D2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 29403017
    448818 6c5l:D3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 29403017
    448819 6c5l:D3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 29403017
    448820 6c5l:D5 (3.2) BS01 rna ? GO:0003735 ... P80339 29403017
    448821 6c5l:D6 (3.2) BS01 rna ? GO:0000049 ... P35871 29403017
    448822 6c5l:D7 (3.2) BS01 rna ? GO:0003735 ... P80340 29403017
    448823 6c5l:D8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 29403017
    448824 6c5l:D9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 29403017
    448825 6c5l:D9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29403017
    448826 6c5l:DC (3.2) BS01 rna ? GO:0000049 ... Q5SLP7 29403017
    448827 6c5l:DC (3.2) BS02 rna ? GO:0000049 ... Q5SLP7 29403017
    448828 6c5l:DD (3.2) BS01 rna ? GO:0002181 ... P60405 29403017
    448829 6c5l:DD (3.2) BS02 MG ? GO:0002181 ... P60405 29403017
    448830 6c5l:DD (3.2) BS03 MG ? GO:0002181 ... P60405 29403017
    448831 6c5l:DE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29403017
    448832 6c5l:DF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29403017
    448833 6c5l:DG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29403017
    448834 6c5l:DG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29403017
    448835 6c5l:DG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 29403017
    448836 6c5l:DH (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29403017
    448837 6c5l:DI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29403017
    448838 6c5l:DI (3.2) BS02 rna ? GO:0003735 ... Q5SLQ1 29403017
    448839 6c5l:DJ (3.2) BS01 rna N/A N/A N/A 29403017
    448840 6c5l:DK (3.2) BS01 rna ? GO:0003735 ... Q5SLP6 29403017
    448841 6c5l:DN (3.2) BS01 rna ? GO:0003729 ... P60488 29403017
    448842 6c5l:DO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29403017
    448843 6c5l:DO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29403017
    448844 6c5l:DP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29403017
    448845 6c5l:DQ (3.2) BS01 rna ? GO:0000049 ... P60489 29403017
    448846 6c5l:DQ (3.2) BS02 rna ? GO:0000049 ... P60489 29403017
    448847 6c5l:DR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29403017
    448848 6c5l:DS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29403017
    448849 6c5l:DS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29403017
    448850 6c5l:DT (3.2) BS01 rna ? GO:0003735 ... P60490 29403017
    448851 6c5l:DT (3.2) BS02 rna ? GO:0003735 ... P60490 29403017
    448852 6c5l:DU (3.2) BS01 rna ? GO:0000027 ... P60491 29403017
    448853 6c5l:DV (3.2) BS01 rna ? GO:0003723 ... P60492 29403017
    448854 6c5l:DW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29403017
    448855 6c5l:DX (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 29403017
    448856 6c5l:DY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29403017
    448857 6c5l:DZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29403017
    448858 6c5l:DZ (3.2) BS02 MG ? GO:0003723 ... Q5SHZ1 29403017
    448859 6c5m:A (2.45) BS01 FUC ? N/A P11609 31391251
    448860 6c5m:A (2.45) BS02 J81 ? N/A P11609 31391251
    448861 6c5n:A (1.673) BS01 NDP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448862 6c5n:A (1.673) BS02 MG 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448863 6c5n:A (1.673) BS03 EN4 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448864 6c5n:A (1.673) BS04 81B 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448865 6c5n:A (1.673) BS05 EN4 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448866 6c5n:A (1.673) BS06 81B 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448867 6c5n:A (1.673) BS07 NDP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448868 6c5n:B (1.673) BS01 NDP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448869 6c5n:B (1.673) BS02 EN4 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448870 6c5n:B (1.673) BS03 81B 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448871 6c5n:B (1.673) BS04 EN4 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448872 6c5n:B (1.673) BS05 81B 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448873 6c5n:B (1.673) BS06 NDP 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448874 6c5n:B (1.673) BS07 MG 1.1.1.86 GO:0000287 ... Q2YUF3 N/A
    448875 6c5q:A (2.404) BS01 EKS ? GO:0003677 ... P37231 30123887 MOAD: ic50=220nM
    BindingDB: IC50=321nM
    448876 6c5q:A (2.404) BS02 EKS ? GO:0003677 ... P37231 30123887 MOAD: ic50=220nM
    BindingDB: IC50=321nM
    448877 6c5t:A (2.75) BS01 EKP ? GO:0003677 ... P37231 30123887
    448878 6c5u:A (2.41) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448879 6c5u:A (2.41) BS02 RIO 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448880 6c5u:A (2.41) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448881 6c5u:B (2.41) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448882 6c5u:B (2.41) BS02 RIO 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448883 6c5u:B (2.41) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448884 6c5u:C (2.41) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448885 6c5u:C (2.41) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448886 6c5u:D (2.41) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448887 6c5u:D (2.41) BS02 RIO 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448888 6c5u:D (2.41) BS03 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    448889 6c5x:A (3.105) BS01 peptide ? GO:0035556 ... C0LEJ4 29674694
    448890 6c5z:A (2.95) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448891 6c5z:A (2.95) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448892 6c5z:B (2.95) BS01 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448893 6c5z:C (2.95) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448894 6c5z:C (2.95) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448895 6c5z:D (2.95) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448896 6c5z:D (2.95) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448897 6c5z:E (2.95) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448898 6c5z:E (2.95) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448899 6c5z:F (2.95) BS01 NAI 1.1.1.22 GO:0001702 ... O60701 N/A
    448900 6c5z:F (2.95) BS02 UPG 1.1.1.22 GO:0001702 ... O60701 N/A
    448901 6c66:A (3.66) BS01 rna ? N/A Q47PJ1 29880725
    448902 6c66:A (3.66) BS02 dna ? N/A Q47PJ1 29880725
    448903 6c66:A (3.66) BS03 dna ? N/A Q47PJ1 29880725
    448904 6c66:B (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448905 6c66:B (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448906 6c66:C (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448907 6c66:C (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448908 6c66:D (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448909 6c66:D (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448910 6c66:E (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448911 6c66:E (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448912 6c66:F (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448913 6c66:F (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448914 6c66:G (3.66) BS01 dna ? GO:0003723 ... Q47PJ0 29880725
    448915 6c66:G (3.66) BS02 FE ? GO:0003723 ... Q47PJ0 29880725
    448916 6c66:G (3.66) BS03 FE ? GO:0003723 ... Q47PJ0 29880725
    448917 6c66:H (3.66) BS01 rna ? N/A Q47PJ3 29880725
    448918 6c66:H (3.66) BS02 dna ? N/A Q47PJ3 29880725
    448919 6c66:I (3.66) BS01 dna ? GO:0042802 ... Q47PJ2 29880725
    448920 6c66:I (3.66) BS02 dna ? GO:0042802 ... Q47PJ2 29880725
    448921 6c66:K (3.66) BS01 dna ? GO:0042802 ... Q47PJ2 29880725
    448922 6c66:K (3.66) BS02 dna ? GO:0042802 ... Q47PJ2 29880725
    448923 6c66:M (3.66) BS01 rna ? GO:0003723 ... Q47PJ4 29880725
    448924 6c66:M (3.66) BS02 dna ? GO:0003723 ... Q47PJ4 29880725
    448925 6c66:O (3.66) BS01 rna ? N/A Q47PJ5 29880725
    448926 6c67:A (2.11) BS01 5ID 2.7.1.20 GO:0000287 ... P9WID5 31002508 BindingDB: Ki=210nM, IC50=1200nM
    448927 6c67:A (2.11) BS02 5ID 2.7.1.20 GO:0000287 ... P9WID5 31002508 BindingDB: Ki=210nM, IC50=1200nM
    448928 6c67:B (2.11) BS01 5ID 2.7.1.20 GO:0000287 ... P9WID5 31002508 BindingDB: Ki=210nM, IC50=1200nM
    448929 6c67:B (2.11) BS02 5ID 2.7.1.20 GO:0000287 ... P9WID5 31002508 BindingDB: Ki=210nM, IC50=1200nM
    448930 6c69:A (1.937) BS01 FUC ? N/A P11609 31391251
    448931 6c69:A (1.937) BS02 ELM ? N/A P11609 31391251
    448932 6c6a:A (2.45) BS01 EL7 ? N/A P11609 31391251
    448933 6c6b:A (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448934 6c6b:B (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448935 6c6b:C (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448936 6c6b:D (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448937 6c6b:E (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448938 6c6b:F (2.0) BS01 ADP 2.7.1.25 GO:0000103 ... J9VMZ3 N/A
    448939 6c6c:A (2.08) BS01 FUC ? N/A P11609 31391251
    448940 6c6c:A (2.08) BS02 EMG ? N/A P11609 31391251
    448941 6c6e:A (2.18) BS01 EM4 ? N/A P11609 31391251
    448942 6c6f:A (1.67) BS01 FUC ? N/A P11609 N/A
    448943 6c6f:A (1.67) BS02 ELS ? N/A P11609 N/A
    448944 6c6g:A (2.1) BS01 CA 3.5.1.131 GO:0003824 ... Q936X3 29523689
    448945 6c6g:B (2.1) BS01 CA 3.5.1.131 GO:0003824 ... Q936X3 29523689
    448946 6c6h:A (2.0) BS01 FUC ? N/A P11609 31391251
    448947 6c6h:A (2.0) BS02 ELG ? N/A P11609 31391251
    448948 6c6i:A (1.65) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    448949 6c6i:A (1.65) BS02 ZN 3.5.2.6 N/A C7C422 30348667
    448950 6c6i:B (1.65) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    448951 6c6i:B (1.65) BS02 ZN 3.5.2.6 N/A C7C422 30348667
    448952 6c6j:A (1.79) BS01 FUC ? N/A P11609 31391251
    448953 6c6j:A (1.79) BS02 J76 ? N/A P11609 31391251
    448954 6c6k:A (2.54) BS01 rna ? GO:0003723 ... P09914 29525521
    448955 6c6k:B (2.54) BS01 rna ? GO:0003723 ... P09914 29525521
    448956 6c6k:B (2.54) BS02 MG ? GO:0003723 ... P09914 29525521
    448957 6c6n:A (2.3) BS01 EKV 1.14.14.17 GO:0004506 ... Q14534 30626872 BindingDB: IC50=70nM
    448958 6c6n:A (2.3) BS02 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448959 6c6n:B (2.3) BS01 EKV 1.14.14.17 GO:0004506 ... Q14534 30626872 BindingDB: IC50=70nM
    448960 6c6n:B (2.3) BS02 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448961 6c6o:A (2.3) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    448962 6c6o:A (2.3) BS02 ENG 2.3.3.9 GO:0000287 ... P9WK17 30137983 MOAD: ic50=0.005uM
    448963 6c6p:A (2.5) BS01 EMV 1.14.14.17 GO:0004506 ... Q14534 30626872 BindingDB: IC50=20nM
    448964 6c6p:A (2.5) BS02 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448965 6c6p:B (2.5) BS01 EMV 1.14.14.17 GO:0004506 ... Q14534 30626872 BindingDB: IC50=20nM
    448966 6c6p:B (2.5) BS02 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448967 6c6q:A (2.0) BS01 MG ? N/A Q80J94 30194229
    448968 6c6q:A (2.0) BS02 MG ? N/A Q80J94 30194229
    448969 6c6q:B (2.0) BS01 MG ? N/A Q80J94 30194229
    448970 6c6q:B (2.0) BS02 MG ? N/A Q80J94 30194229
    448971 6c6q:D (2.0) BS01 MG ? N/A Q6SJQ7 30194229
    448972 6c6q:F (2.0) BS01 MG ? N/A Q6SJQ7 30194229
    448973 6c6r:A (3.0) BS01 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448974 6c6r:B (3.0) BS01 FAD 1.14.14.17 GO:0004506 ... Q14534 30626872
    448975 6c6s:D (3.7) BS01 dna ? GO:0001000 ... P0AFW0 29887376
    448976 6c6s:D (3.7) BS02 dna ? GO:0001000 ... P0AFW0 29887376
    448977 6c6s:I (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448978 6c6s:I (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448979 6c6s:I (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448980 6c6s:J (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448981 6c6s:J (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448982 6c6s:J (3.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448983 6c6s:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448984 6c6s:J (3.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448985 6c6s:J (3.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448986 6c6t:D (3.5) BS01 dna ? GO:0001000 ... P0AFW0 29887376
    448987 6c6t:I (3.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448988 6c6t:I (3.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448989 6c6t:I (3.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448990 6c6t:J (3.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448991 6c6t:J (3.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448992 6c6t:J (3.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448993 6c6t:J (3.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448994 6c6t:J (3.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448995 6c6t:J (3.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    448996 6c6u:I (3.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448997 6c6u:I (3.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448998 6c6u:I (3.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 29887376
    448999 6c6u:J (3.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376
    449000 6c6u:J (3.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 29887376

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).