SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    449601 6caq:E (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    449602 6caq:F (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    449603 6caq:F (3.4) BS02 MG ? GO:0003735 ... Q5SLP8 N/A
    449604 6caq:G (3.4) BS01 rna ? GO:0000049 ... P17291 N/A
    449605 6caq:G (3.4) BS02 MG ? GO:0000049 ... P17291 N/A
    449606 6caq:G (3.4) BS03 MG ? GO:0000049 ... P17291 N/A
    449607 6caq:H (3.4) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    449608 6caq:I (3.4) BS01 rna ? GO:0000049 ... P80374 N/A
    449609 6caq:J (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    449610 6caq:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    449611 6caq:K (3.4) BS01 rna ? GO:0003735 ... P80376 N/A
    449612 6caq:K (3.4) BS02 MG ? GO:0003735 ... P80376 N/A
    449613 6caq:L (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    449614 6caq:M (3.4) BS01 rna ? GO:0000049 ... P80377 N/A
    449615 6caq:N (3.4) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    449616 6caq:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    449617 6caq:O (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    449618 6caq:P (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    449619 6caq:Q (3.4) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    449620 6caq:R (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    449621 6caq:S (3.4) BS01 rna ? GO:0003723 ... Q5SHP2 N/A
    449622 6caq:T (3.4) BS01 rna ? GO:0003723 ... P80380 N/A
    449623 6car:B (3.4) BS01 rna ? GO:0003735 ... P80371 30113694
    449624 6car:B (3.4) BS02 MG ? GO:0003735 ... P80371 30113694
    449625 6car:C (3.4) BS01 rna ? GO:0003676 ... P80372 30113694
    449626 6car:C (3.4) BS02 MG ? GO:0003676 ... P80372 30113694
    449627 6car:C (3.4) BS03 MG ? GO:0003676 ... P80372 30113694
    449628 6car:D (3.4) BS01 rna ? GO:0003723 ... P80373 30113694
    449629 6car:D (3.4) BS02 MG ? GO:0003723 ... P80373 30113694
    449630 6car:E (3.4) BS01 rna ? GO:0003723 ... Q5SHQ5 30113694
    449631 6car:F (3.4) BS01 rna ? GO:0003735 ... Q5SLP8 30113694
    449632 6car:G (3.4) BS01 rna ? GO:0000049 ... P17291 30113694
    449633 6car:H (3.4) BS01 rna ? GO:0003735 ... P0DOY9 30113694
    449634 6car:I (3.4) BS01 rna ? GO:0000049 ... P80374 30113694
    449635 6car:J (3.4) BS01 rna ? GO:0000049 ... Q5SHN7 30113694
    449636 6car:J (3.4) BS02 MG ? GO:0000049 ... Q5SHN7 30113694
    449637 6car:K (3.4) BS01 rna ? GO:0003735 ... P80376 30113694
    449638 6car:K (3.4) BS02 MG ? GO:0003735 ... P80376 30113694
    449639 6car:L (3.4) BS01 rna ? GO:0000049 ... Q5SHN3 30113694
    449640 6car:M (3.4) BS01 rna ? GO:0000049 ... P80377 30113694
    449641 6car:N (3.4) BS01 rna ? GO:0003735 ... P0DOY6 30113694
    449642 6car:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 30113694
    449643 6car:O (3.4) BS01 rna ? GO:0003735 ... Q5SJ76 30113694
    449644 6car:P (3.4) BS01 rna ? GO:0003735 ... Q5SJH3 30113694
    449645 6car:Q (3.4) BS01 rna ? GO:0003735 ... P0DOY7 30113694
    449646 6car:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 30113694
    449647 6car:R (3.4) BS01 rna ? GO:0003735 ... Q5SLQ0 30113694
    449648 6car:S (3.4) BS01 rna ? GO:0000028 ... Q5SHP2 30113694
    449649 6car:T (3.4) BS01 rna ? GO:0003723 ... P80380 30113694
    449650 6cas:B (3.5) BS01 rna ? GO:0003735 ... P80371 30113694
    449651 6cas:B (3.5) BS02 MG ? GO:0003735 ... P80371 30113694
    449652 6cas:C (3.5) BS01 rna ? GO:0003676 ... P80372 30113694
    449653 6cas:C (3.5) BS02 MG ? GO:0003676 ... P80372 30113694
    449654 6cas:C (3.5) BS03 MG ? GO:0003676 ... P80372 30113694
    449655 6cas:D (3.5) BS01 rna ? GO:0003723 ... P80373 30113694
    449656 6cas:D (3.5) BS02 MG ? GO:0003723 ... P80373 30113694
    449657 6cas:E (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 30113694
    449658 6cas:F (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 30113694
    449659 6cas:G (3.5) BS01 rna ? GO:0000049 ... P17291 30113694
    449660 6cas:H (3.5) BS01 rna ? GO:0003735 ... P0DOY9 30113694
    449661 6cas:I (3.5) BS01 rna ? GO:0000049 ... P80374 30113694
    449662 6cas:J (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 30113694
    449663 6cas:J (3.5) BS02 MG ? GO:0000049 ... Q5SHN7 30113694
    449664 6cas:K (3.5) BS01 rna ? GO:0003735 ... P80376 30113694
    449665 6cas:K (3.5) BS02 MG ? GO:0003735 ... P80376 30113694
    449666 6cas:L (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 30113694
    449667 6cas:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 30113694
    449668 6cas:M (3.5) BS01 rna ? GO:0000049 ... P80377 30113694
    449669 6cas:N (3.5) BS01 rna ? GO:0003735 ... P0DOY6 30113694
    449670 6cas:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 30113694
    449671 6cas:O (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 30113694
    449672 6cas:P (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 30113694
    449673 6cas:Q (3.5) BS01 rna ? GO:0003735 ... P0DOY7 30113694
    449674 6cas:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 30113694
    449675 6cas:R (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 30113694
    449676 6cas:S (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 30113694
    449677 6cas:T (3.5) BS01 rna ? GO:0003723 ... P80380 30113694
    449678 6cau:A (2.5) BS01 ANP 6.3.2.8 GO:0005524 ... B7GV74 N/A
    449679 6cau:A (2.5) BS02 MG 6.3.2.8 GO:0005524 ... B7GV74 N/A
    449680 6cav:A (2.6) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449681 6cav:A (2.6) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449682 6cav:A (2.6) BS03 84D 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449683 6cav:B (2.6) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449684 6cav:B (2.6) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449685 6cav:B (2.6) BS03 84D 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449686 6cav:C (2.6) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449687 6cav:C (2.6) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449688 6cav:C (2.6) BS03 84D 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449689 6cav:D (2.6) BS01 GNP 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449690 6cav:D (2.6) BS02 MG 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449691 6cav:D (2.6) BS03 84D 2.3.1.-
    2.7.1.190
    N/A P0A0C1 29661878
    449692 6caw:A (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    449693 6caw:A (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    449694 6caw:B (1.95) BS01 HEM 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    449695 6caw:B (1.95) BS02 OXY 1.11.1.21 GO:0004096 ... Q3JNW6 N/A
    449696 6cax:A (1.25) BS01 EUY 3.5.1.108 GO:0006796 ... B7UZI4 N/A
    449697 6cax:A (1.25) BS02 EUY 3.5.1.108 GO:0006796 ... B7UZI4 N/A
    449698 6cax:A (1.25) BS03 ZN 3.5.1.108 GO:0006796 ... B7UZI4 N/A
    449699 6cay:A (2.0) BS01 ERG ? N/A Q06681 29467216
    449700 6cay:B (2.0) BS01 ERG ? N/A Q06681 29467216
    449701 6cb1:7 (4.6) BS01 rna ? GO:0003674 ... P40007 29512650
    449702 6cb1:7 (4.6) BS02 rna ? GO:0003674 ... P40007 29512650
    449703 6cb1:A (4.6) BS01 rna ? GO:0003674 ... P53136 29512650
    449704 6cb1:C (4.6) BS01 rna ? GO:0002181 ... P10664 29512650
    449705 6cb1:D (4.6) BS01 rna ? GO:0000460 ... P10962 29512650
    449706 6cb1:E (4.6) BS01 rna ? GO:0000027 ... Q02326 29512650
    449707 6cb1:F (4.6) BS01 rna ? GO:0000463 ... P05737 29512650
    449708 6cb1:G (4.6) BS01 rna ? GO:0000470 ... P17076 29512650
    449709 6cb1:G (4.6) BS02 rna ? GO:0000470 ... P17076 29512650
    449710 6cb1:I (4.6) BS01 rna ? GO:0000055 ... P38805 29512650
    449711 6cb1:K (4.6) BS01 rna ? GO:0000463 ... P38779 29512650
    449712 6cb1:L (4.6) BS01 rna ? GO:0002181 ... Q12690 29512650
    449713 6cb1:L (4.6) BS02 rna ? GO:0002181 ... Q12690 29512650
    449714 6cb1:M (4.6) BS01 rna ? GO:0000027 ... P36105 29512650
    449715 6cb1:N (4.6) BS01 rna ? GO:0002181 ... P05748 29512650
    449716 6cb1:O (4.6) BS01 rna ? GO:0000470 ... P26784 29512650
    449717 6cb1:P (4.6) BS01 rna ? GO:0000448 ... P05740 29512650
    449718 6cb1:P (4.6) BS02 rna ? GO:0000448 ... P05740 29512650
    449719 6cb1:Q (4.6) BS01 rna ? GO:0002181 ... P0CX49 29512650
    449720 6cb1:S (4.6) BS01 rna ? GO:0002181 ... P0CX23 29512650
    449721 6cb1:X (4.6) BS01 rna ? GO:0000027 ... P04456 29512650
    449722 6cb1:X (4.6) BS02 rna ? GO:0000027 ... P04456 29512650
    449723 6cb1:Y (4.6) BS01 rna ? GO:0002181 ... P05743 29512650
    449724 6cb1:Y (4.6) BS02 rna ? GO:0002181 ... P05743 29512650
    449725 6cb1:Z (4.6) BS01 rna ? GO:0002181 ... P0C2H6 29512650
    449726 6cb1:b (4.6) BS01 rna ? GO:0000027 ... Q08235 29512650
    449727 6cb1:b (4.6) BS02 peptide ? GO:0000027 ... Q08235 29512650
    449728 6cb1:c (4.6) BS01 rna ? GO:0002181 ... P14120 29512650
    449729 6cb1:e (4.6) BS01 rna ? GO:0002181 ... P38061 29512650
    449730 6cb1:f (4.6) BS01 rna ? GO:0000027 ... P05744 29512650
    449731 6cb1:g (4.6) BS01 rna ? GO:0002181 ... P87262 29512650
    449732 6cb1:h (4.6) BS01 rna ? GO:0000463 ... P0CX84 29512650
    449733 6cb1:h (4.6) BS02 rna ? GO:0000463 ... P0CX84 29512650
    449734 6cb1:i (4.6) BS01 rna ? GO:0002181 ... P05745 29512650
    449735 6cb1:j (4.6) BS01 rna ? GO:0000448 ... P49166 29512650
    449736 6cb1:j (4.6) BS02 rna ? GO:0000448 ... P49166 29512650
    449737 6cb1:j (4.6) BS03 ZN ? GO:0000448 ... P49166 29512650
    449738 6cb1:k (4.6) BS01 rna ? GO:0002181 ... P49167 29512650
    449739 6cb1:n (4.6) BS01 rna ? GO:0000462 ... P53261 29512650
    449740 6cb1:n (4.6) BS02 rna ? GO:0000462 ... P53261 29512650
    449741 6cb1:o (4.6) BS01 rna ? GO:0000463 ... P53927 29512650
    449742 6cb1:p (4.6) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 29512650
    449743 6cb1:s (4.6) BS01 rna ? GO:0006364 ... Q04660 29512650
    449744 6cb1:t (4.6) BS01 rna ? GO:0000463 ... P40693 29512650
    449745 6cb5:A (1.78) BS01 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449746 6cb5:A (1.78) BS02 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449747 6cb5:B (1.78) BS01 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449748 6cb5:B (1.78) BS02 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449749 6cb5:C (1.78) BS01 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449750 6cb5:C (1.78) BS02 EV7 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=4.3uM
    449751 6cb8:A (3.8) BS01 CDL ? N/A Q5Y4Y6 29695864
    449752 6cba:A (1.13) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    449753 6cba:A (1.13) BS02 AKG 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    449754 6cba:A (1.13) BS03 GGB 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    449755 6cbd:A (2.203) BS01 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449756 6cbd:A (2.203) BS02 rna 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449757 6cbd:A (2.203) BS03 TRP 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449758 6cbd:A (2.203) BS04 TRP 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449759 6cbd:A (2.203) BS05 TRP 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449760 6cbd:A (2.203) BS06 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 29576456
    449761 6cbf:A (2.3) BS01 EWD 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=6.8uM
    449762 6cbf:B (2.3) BS01 EWD 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754
    449763 6cbf:C (2.3) BS01 EWD 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=6.8uM
    449764 6cbf:C (2.3) BS02 EWD 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=6.8uM
    449765 6cbg:A (2.0) BS01 EWG 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 BindingDB: Ki=113000nM
    449766 6cbg:B (2.0) BS01 EWG 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=113uM
    BindingDB: Ki=113000nM
    449767 6cbg:B (2.0) BS02 EWG 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=113uM
    BindingDB: Ki=113000nM
    449768 6cbg:C (2.0) BS01 EWG 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=113uM
    BindingDB: Ki=113000nM
    449769 6cbh:B (2.0) BS01 EWJ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 BindingDB: Ki=510nM
    449770 6cbh:C (2.0) BS01 EWJ 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 29575754 MOAD: Ki=0.51uM
    BindingDB: Ki=510nM
    449771 6cbi:A (2.75) BS01 peptide ? GO:0000122 ... P12004 29917264
    449772 6cbi:C (2.75) BS01 peptide ? GO:0000122 ... P12004 29917264
    449773 6cbi:D (2.75) BS01 peptide ? GO:0000122 ... P12004 29917264
    449774 6cbi:E (2.75) BS01 peptide ? GO:0000122 ... P12004 29917264
    449775 6cbj:H (2.85) BS01 MAN ? N/A S6C4S0 29549260
    449776 6cbj:H (2.85) BS02 MAN ? N/A S6C4S0 29549260
    449777 6cbj:L (2.85) BS01 MAN ? GO:0005576 ... Q6PJG0 29549260
    449778 6cbj:L (2.85) BS02 MAN ? GO:0005576 ... Q6PJG0 29549260
    449779 6cbk:A (1.75) BS01 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449780 6cbk:A (1.75) BS02 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449781 6cbk:B (1.75) BS01 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449782 6cbk:B (1.75) BS02 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449783 6cbk:C (1.75) BS01 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449784 6cbk:C (1.75) BS02 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449785 6cbk:D (1.75) BS01 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449786 6cbk:D (1.75) BS02 PMP 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449787 6cbl:A (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449788 6cbl:A (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449789 6cbl:B (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449790 6cbl:B (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449791 6cbl:C (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449792 6cbl:C (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449793 6cbl:D (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449794 6cbl:D (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449795 6cbl:E (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449796 6cbl:E (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449797 6cbl:F (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449798 6cbl:F (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449799 6cbl:G (1.6) BS01 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565
    449800 6cbl:G (1.6) BS02 DOW 2.6.1.93
    2.6.1.95
    GO:0008483 ... Q53U08 29516565

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).