SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44801 1r23:A (2.0) BS01 ZN ? GO:0003677 ... P30340 14568530
    44802 1r23:B (2.0) BS01 ZN ? GO:0003677 ... P30340 14568530
    44803 1r27:A (2.0) BS01 MO 1.7.5.1 GO:0005515 ... P09152 14725769
    44804 1r27:A (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 14725769
    44805 1r27:A (2.0) BS03 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    44806 1r27:A (2.0) BS04 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    44807 1r27:B (2.0) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 14725769
    44808 1r27:B (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44809 1r27:B (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44810 1r27:B (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44811 1r27:C (2.0) BS01 MO 1.7.5.1 GO:0005515 ... P09152 14725769
    44812 1r27:C (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 14725769
    44813 1r27:C (2.0) BS03 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    44814 1r27:C (2.0) BS04 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    44815 1r27:D (2.0) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 14725769
    44816 1r27:D (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44817 1r27:D (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44818 1r27:D (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    44819 1r2b:A (2.2) BS01 peptide ? N/A P41182 14690607
    44820 1r2b:A (2.2) BS02 peptide ? N/A P41182 14690607
    44821 1r2b:B (2.2) BS01 peptide ? N/A P41182 14690607
    44822 1r2b:B (2.2) BS02 peptide ? N/A P41182 14690607
    44823 1r2c:C (2.86) BS01 HEM ? GO:0005506 ... P07173 15073325
    44824 1r2c:C (2.86) BS02 HEM ? GO:0005506 ... P07173 15073325
    44825 1r2c:C (2.86) BS03 HEM ? GO:0005506 ... P07173 15073325
    44826 1r2c:C (2.86) BS04 HEM ? GO:0005506 ... P07173 15073325
    44827 1r2c:L (2.86) BS01 BCB ? GO:0009772 ... P06009 15073325
    44828 1r2c:L (2.86) BS02 BCB ? GO:0009772 ... P06009 15073325
    44829 1r2c:L (2.86) BS03 BPB ? GO:0009772 ... P06009 15073325
    44830 1r2c:L (2.86) BS04 UQ2 ? GO:0009772 ... P06009 15073325
    44831 1r2c:L (2.86) BS05 FE2 ? GO:0009772 ... P06009 15073325
    44832 1r2c:L (2.86) BS06 BCB ? GO:0009772 ... P06009 15073325
    44833 1r2c:L (2.86) BS07 BPB ? GO:0009772 ... P06009 15073325
    44834 1r2c:L (2.86) BS08 MQ7 ? GO:0009772 ... P06009 15073325
    44835 1r2c:M (2.86) BS01 BCB ? GO:0009772 ... P06010 15073325
    44836 1r2c:M (2.86) BS02 BCB ? GO:0009772 ... P06010 15073325
    44837 1r2c:M (2.86) BS03 BPB ? GO:0009772 ... P06010 15073325
    44838 1r2c:M (2.86) BS04 FE2 ? GO:0009772 ... P06010 15073325
    44839 1r2c:M (2.86) BS05 BCB ? GO:0009772 ... P06010 15073325
    44840 1r2c:M (2.86) BS06 BCB ? GO:0009772 ... P06010 15073325
    44841 1r2c:M (2.86) BS07 BPB ? GO:0009772 ... P06010 15073325
    44842 1r2c:M (2.86) BS08 MQ7 ? GO:0009772 ... P06010 15073325
    44843 1r2c:M (2.86) BS09 NS5 ? GO:0009772 ... P06010 15073325
    44844 1r2f:A (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    44845 1r2f:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    44846 1r2f:B (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    44847 1r2f:B (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    44848 1r2j:A (2.1) BS01 FAD ? GO:0000166 ... Q9KIE5 14623185
    44849 1r2m:A (1.0) BS01 MN ? GO:0005576 ... P79073 14555650
    44850 1r2n:A (-1.00) BS01 RET ? GO:0005216 ... P02945 12119389
    44851 1r2q:A (1.05) BS01 MG 3.6.5.2 GO:0003924 ... P20339 14684892
    44852 1r2q:A (1.05) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 14684892
    44853 1r2r:B (1.5) BS01 MG 4.2.3.3
    5.3.1.1
    GO:0004807 ... P00939 14643664
    44854 1r2u:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    44855 1r2y:A (2.34) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44856 1r2y:A (2.34) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44857 1r2y:A (2.34) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44858 1r2z:A (1.63) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44859 1r2z:A (1.63) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44860 1r2z:A (1.63) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    44861 1r30:A (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    44862 1r30:A (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    44863 1r30:A (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    44864 1r30:A (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    44865 1r30:B (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    44866 1r30:B (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    44867 1r30:B (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    44868 1r30:B (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    44869 1r31:A (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    44870 1r31:A (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    44871 1r31:B (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    44872 1r31:B (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    44873 1r33:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    44874 1r33:A (1.8) BS02 LKA 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.07mM
    44875 1r34:A (1.95) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    44876 1r34:A (1.95) BS02 LKS 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.9mM
    44877 1r35:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    44878 1r35:A (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    44879 1r35:A (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    44880 1r35:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    44881 1r35:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    44882 1r35:B (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    44883 1r37:A (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    44884 1r37:A (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    44885 1r37:A (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    44886 1r37:A (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    44887 1r37:B (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    44888 1r37:B (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    44889 1r37:B (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    44890 1r37:B (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    44891 1r38:A (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    44892 1r38:B (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    44893 1r38:C (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    44894 1r38:D (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    44895 1r3c:A (2.0) BS01 MG 2.7.11.24 GO:0000077 ... Q16539 14726206
    44896 1r3e:A (2.1) BS01 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    44897 1r3e:A (2.1) BS02 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    44898 1r3n:A (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44899 1r3n:A (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44900 1r3n:A (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44901 1r3n:B (2.7) BS01 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44902 1r3n:B (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44903 1r3n:B (2.7) BS03 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44904 1r3n:C (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44905 1r3n:C (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44906 1r3n:C (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44907 1r3n:D (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44908 1r3n:D (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44909 1r3n:D (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44910 1r3n:E (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44911 1r3n:E (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44912 1r3n:E (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44913 1r3n:E (2.7) BS04 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44914 1r3n:F (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44915 1r3n:F (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44916 1r3n:G (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44917 1r3n:G (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44918 1r3n:G (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44919 1r3n:H (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44920 1r3n:H (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44921 1r3q:A (1.7) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    44922 1r3s:A (1.65) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    44923 1r3t:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    44924 1r3u:A (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    44925 1r3u:B (2.5) BS01 MG 2.4.2.8 GO:0000166 ... Q8R7L0 N/A
    44926 1r3v:A (1.9) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    44927 1r3w:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    44928 1r3y:A (1.755) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    44929 1r42:A (2.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    44930 1r43:A (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44931 1r43:A (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44932 1r43:B (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44933 1r43:B (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44934 1r43:B (2.8) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    44935 1r44:A (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44936 1r44:B (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44937 1r44:C (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44938 1r44:D (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44939 1r44:E (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44940 1r44:F (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    44941 1r47:A (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    44942 1r47:B (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    44943 1r49:A (3.13) BS01 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    44944 1r49:A (3.13) BS02 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    44945 1r4a:A (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    44946 1r4a:A (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    44947 1r4a:B (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    44948 1r4a:B (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    44949 1r4a:C (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    44950 1r4a:C (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    44951 1r4a:D (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    44952 1r4a:D (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    44953 1r4f:A (2.3) BS01 CA 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    44954 1r4f:B (2.3) BS01 CA 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    44955 1r4f:B (2.3) BS02 AD3 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    44956 1r4i:A (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    44957 1r4i:A (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    44958 1r4i:A (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    44959 1r4i:A (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    44960 1r4i:B (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    44961 1r4i:B (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    44962 1r4i:B (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    44963 1r4i:B (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    44964 1r4l:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    44965 1r4l:A (3.0) BS02 XX5 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895 BindingDB: IC50=0.44nM
    44966 1r4m:F (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44967 1r4m:H (3.0) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44968 1r4n:B (3.6) BS01 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44969 1r4n:D (3.6) BS01 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44970 1r4n:F (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44971 1r4n:F (3.6) BS02 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44972 1r4n:H (3.6) BS01 ZN 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44973 1r4n:H (3.6) BS02 ATP 6.2.1.64 GO:0000278 ... Q8TBC4 14690597
    44974 1r4o:A (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    44975 1r4o:A (2.5) BS02 dna ? GO:0003700 ... P06536 1865905
    44976 1r4o:A (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    44977 1r4o:A (2.5) BS04 ZN ? GO:0003700 ... P06536 1865905
    44978 1r4o:B (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    44979 1r4o:B (2.5) BS02 ZN ? GO:0003700 ... P06536 1865905
    44980 1r4o:B (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    44981 1r4p:A (1.77) BS01 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44982 1r4p:A (1.77) BS02 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44983 1r4p:A (1.77) BS03 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44984 1r4p:A (1.77) BS04 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44985 1r4p:A (1.77) BS05 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44986 1r4p:A (1.77) BS06 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    44987 1r4p:B (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    44988 1r4p:C (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    44989 1r4p:C (1.77) BS02 1PS ? GO:0005576 ... P09386 15075327
    44990 1r4p:C (1.77) BS03 FMT ? GO:0005576 ... P09386 15075327
    44991 1r4p:D (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    44992 1r4p:D (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    44993 1r4p:E (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    44994 1r4p:E (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    44995 1r4p:F (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    44996 1r4p:F (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    44997 1r4r:A (3.0) BS01 dna ? GO:0003700 ... P06536 1865905
    44998 1r4r:A (3.0) BS02 dna ? GO:0003700 ... P06536 1865905
    44999 1r4r:A (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    45000 1r4r:A (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).