SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    450401 6cfj:2W (2.8) BS01 rna ? GO:0003735 ... Q5SHP3 29410130
    450402 6cfj:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    450403 6cfj:2X (2.8) BS01 rna ? GO:0003735 ... Q5SHP0 29410130
    450404 6cfj:2X (2.8) BS02 MG ? GO:0003735 ... Q5SHP0 29410130
    450405 6cfj:2Y (2.8) BS01 rna ? GO:0003723 ... Q5SHP9 29410130
    450406 6cfj:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    450407 6cfj:2Z (2.8) BS01 rna ? GO:0003723 ... Q5SHZ1 29410130
    450408 6cfj:2Z (2.8) BS02 rna ? GO:0003723 ... Q5SHZ1 29410130
    450409 6cfj:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 29410130
    450410 6cfj:2b (2.8) BS01 rna ? GO:0003735 ... P80371 29410130
    450411 6cfj:2c (2.8) BS01 rna ? GO:0003676 ... P80372 29410130
    450412 6cfj:2d (2.8) BS01 rna ? GO:0003723 ... P80373 29410130
    450413 6cfj:2d (2.8) BS02 SF4 ? GO:0003723 ... P80373 29410130
    450414 6cfj:2d (2.8) BS03 MG ? GO:0003723 ... P80373 29410130
    450415 6cfj:2e (2.8) BS01 rna ? GO:0003723 ... Q5SHQ5 29410130
    450416 6cfj:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    450417 6cfj:2f (2.8) BS01 rna ? GO:0003735 ... Q5SLP8 29410130
    450418 6cfj:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 29410130
    450419 6cfj:2g (2.8) BS01 rna ? GO:0000049 ... P17291 29410130
    450420 6cfj:2g (2.8) BS02 rna ? GO:0000049 ... P17291 29410130
    450421 6cfj:2h (2.8) BS01 rna ? GO:0003735 ... P0DOY9 29410130
    450422 6cfj:2i (2.8) BS01 rna ? GO:0000049 ... P80374 29410130
    450423 6cfj:2i (2.8) BS02 rna ? GO:0000049 ... P80374 29410130
    450424 6cfj:2j (2.8) BS01 rna ? GO:0000049 ... Q5SHN7 29410130
    450425 6cfj:2k (2.8) BS01 rna ? GO:0003735 ... P80376 29410130
    450426 6cfj:2k (2.8) BS02 rna ? GO:0003735 ... P80376 29410130
    450427 6cfj:2k (2.8) BS03 MG ? GO:0003735 ... P80376 29410130
    450428 6cfj:2l (2.8) BS01 rna ? GO:0000049 ... Q5SHN3 29410130
    450429 6cfj:2l (2.8) BS02 rna ? GO:0000049 ... Q5SHN3 29410130
    450430 6cfj:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 29410130
    450431 6cfj:2m (2.8) BS01 rna ? GO:0000049 ... P80377 29410130
    450432 6cfj:2m (2.8) BS02 rna ? GO:0000049 ... P80377 29410130
    450433 6cfj:2m (2.8) BS03 rna ? GO:0000049 ... P80377 29410130
    450434 6cfj:2n (2.8) BS01 rna ? GO:0003735 ... P0DOY6 29410130
    450435 6cfj:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    450436 6cfj:2o (2.8) BS01 rna ? GO:0003735 ... Q5SJ76 29410130
    450437 6cfj:2o (2.8) BS02 rna ? GO:0003735 ... Q5SJ76 29410130
    450438 6cfj:2p (2.8) BS01 rna ? GO:0003735 ... Q5SJH3 29410130
    450439 6cfj:2q (2.8) BS01 rna ? GO:0003735 ... P0DOY7 29410130
    450440 6cfj:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 29410130
    450441 6cfj:2q (2.8) BS03 MG ? GO:0003735 ... P0DOY7 29410130
    450442 6cfj:2r (2.8) BS01 rna ? GO:0003735 ... Q5SLQ0 29410130
    450443 6cfj:2r (2.8) BS02 MG ? GO:0003735 ... Q5SLQ0 29410130
    450444 6cfj:2s (2.8) BS01 rna ? GO:0000028 ... Q5SHP2 29410130
    450445 6cfj:2t (2.8) BS01 rna ? GO:0003723 ... P80380 29410130
    450446 6cfj:2t (2.8) BS02 MG ? GO:0003723 ... P80380 29410130
    450447 6cfk:10 (2.7) BS01 rna ? GO:0003735 ... P60493 29410130
    450448 6cfk:10 (2.7) BS02 rna ? GO:0003735 ... P60493 29410130
    450449 6cfk:10 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    450450 6cfk:10 (2.7) BS04 MG ? GO:0003735 ... P60493 29410130
    450451 6cfk:11 (2.7) BS01 rna ? GO:0003735 ... P60494 29410130
    450452 6cfk:11 (2.7) BS02 MG ? GO:0003735 ... P60494 29410130
    450453 6cfk:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    450454 6cfk:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    450455 6cfk:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    450456 6cfk:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 29410130
    450457 6cfk:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 29410130
    450458 6cfk:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    450459 6cfk:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    450460 6cfk:15 (2.7) BS01 rna ? GO:0003735 ... P80339 29410130
    450461 6cfk:15 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    450462 6cfk:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    450463 6cfk:16 (2.7) BS01 rna ? GO:0000049 ... P35871 29410130
    450464 6cfk:16 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    450465 6cfk:17 (2.7) BS01 rna ? GO:0003735 ... P80340 29410130
    450466 6cfk:17 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    450467 6cfk:17 (2.7) BS03 MG ? GO:0003735 ... P80340 29410130
    450468 6cfk:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    450469 6cfk:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 29410130
    450470 6cfk:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 29410130
    450471 6cfk:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    450472 6cfk:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    450473 6cfk:1D (2.7) BS01 rna ? GO:0002181 ... P60405 29410130
    450474 6cfk:1D (2.7) BS02 rna ? GO:0002181 ... P60405 29410130
    450475 6cfk:1D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    450476 6cfk:1D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    450477 6cfk:1D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    450478 6cfk:1D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    450479 6cfk:1D (2.7) BS07 MG ? GO:0002181 ... P60405 29410130
    450480 6cfk:1D (2.7) BS08 MG ? GO:0002181 ... P60405 29410130
    450481 6cfk:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 29410130
    450482 6cfk:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 29410130
    450483 6cfk:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 29410130
    450484 6cfk:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 29410130
    450485 6cfk:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 29410130
    450486 6cfk:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 29410130
    450487 6cfk:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 29410130
    450488 6cfk:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 29410130
    450489 6cfk:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 29410130
    450490 6cfk:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 29410130
    450491 6cfk:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 29410130
    450492 6cfk:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 29410130
    450493 6cfk:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 29410130
    450494 6cfk:1F (2.7) BS10 MG ? GO:0003735 ... Q5SHN9 29410130
    450495 6cfk:1F (2.7) BS11 MG ? GO:0003735 ... Q5SHN9 29410130
    450496 6cfk:1F (2.7) BS12 MG ? GO:0003735 ... Q5SHN9 29410130
    450497 6cfk:1F (2.7) BS13 MG ? GO:0003735 ... Q5SHN9 29410130
    450498 6cfk:1F (2.7) BS14 ARG ? GO:0003735 ... Q5SHN9 29410130
    450499 6cfk:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 29410130
    450500 6cfk:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 29410130
    450501 6cfk:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 29410130
    450502 6cfk:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 29410130
    450503 6cfk:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 29410130
    450504 6cfk:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 29410130
    450505 6cfk:1N (2.7) BS01 rna ? GO:0003729 ... P60488 29410130
    450506 6cfk:1N (2.7) BS02 MG ? GO:0003729 ... P60488 29410130
    450507 6cfk:1N (2.7) BS03 MG ? GO:0003729 ... P60488 29410130
    450508 6cfk:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 29410130
    450509 6cfk:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 29410130
    450510 6cfk:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 29410130
    450511 6cfk:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 29410130
    450512 6cfk:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 29410130
    450513 6cfk:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 29410130
    450514 6cfk:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 29410130
    450515 6cfk:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 29410130
    450516 6cfk:1Q (2.7) BS03 MG ? GO:0000049 ... P60489 29410130
    450517 6cfk:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 29410130
    450518 6cfk:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 29410130
    450519 6cfk:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 29410130
    450520 6cfk:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 29410130
    450521 6cfk:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 29410130
    450522 6cfk:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 29410130
    450523 6cfk:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 29410130
    450524 6cfk:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 29410130
    450525 6cfk:1T (2.7) BS01 rna ? GO:0003735 ... P60490 29410130
    450526 6cfk:1T (2.7) BS02 rna ? GO:0003735 ... P60490 29410130
    450527 6cfk:1U (2.7) BS01 rna ? GO:0000027 ... P60491 29410130
    450528 6cfk:1U (2.7) BS02 MG ? GO:0000027 ... P60491 29410130
    450529 6cfk:1U (2.7) BS03 MG ? GO:0000027 ... P60491 29410130
    450530 6cfk:1U (2.7) BS04 MG ? GO:0000027 ... P60491 29410130
    450531 6cfk:1U (2.7) BS05 MG ? GO:0000027 ... P60491 29410130
    450532 6cfk:1U (2.7) BS06 MG ? GO:0000027 ... P60491 29410130
    450533 6cfk:1U (2.7) BS07 MG ? GO:0000027 ... P60491 29410130
    450534 6cfk:1V (2.7) BS01 rna ? GO:0003723 ... P60492 29410130
    450535 6cfk:1V (2.7) BS02 MG ? GO:0003723 ... P60492 29410130
    450536 6cfk:1V (2.7) BS03 MG ? GO:0003723 ... P60492 29410130
    450537 6cfk:1V (2.7) BS04 MG ? GO:0003723 ... P60492 29410130
    450538 6cfk:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 29410130
    450539 6cfk:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 29410130
    450540 6cfk:1X (2.7) BS01 rna ? GO:0003735 ... Q5SHP0 29410130
    450541 6cfk:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 29410130
    450542 6cfk:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 29410130
    450543 6cfk:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 29410130
    450544 6cfk:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 29410130
    450545 6cfk:1b (2.7) BS01 rna ? GO:0003735 ... P80371 29410130
    450546 6cfk:1b (2.7) BS02 MG ? GO:0003735 ... P80371 29410130
    450547 6cfk:1c (2.7) BS01 rna ? GO:0003676 ... P80372 29410130
    450548 6cfk:1d (2.7) BS01 rna ? GO:0003723 ... P80373 29410130
    450549 6cfk:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 29410130
    450550 6cfk:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 29410130
    450551 6cfk:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 29410130
    450552 6cfk:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 29410130
    450553 6cfk:1g (2.7) BS01 rna ? GO:0000049 ... P17291 29410130
    450554 6cfk:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 29410130
    450555 6cfk:1i (2.7) BS01 rna ? GO:0000049 ... P80374 29410130
    450556 6cfk:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 29410130
    450557 6cfk:1k (2.7) BS01 rna ? GO:0003735 ... P80376 29410130
    450558 6cfk:1k (2.7) BS02 MG ? GO:0003735 ... P80376 29410130
    450559 6cfk:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 29410130
    450560 6cfk:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 29410130
    450561 6cfk:1m (2.7) BS01 rna ? GO:0000049 ... P80377 29410130
    450562 6cfk:1m (2.7) BS02 MG ? GO:0000049 ... P80377 29410130
    450563 6cfk:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 29410130
    450564 6cfk:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 29410130
    450565 6cfk:1n (2.7) BS03 MG ? GO:0003735 ... P0DOY6 29410130
    450566 6cfk:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 29410130
    450567 6cfk:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 29410130
    450568 6cfk:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 29410130
    450569 6cfk:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 29410130
    450570 6cfk:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 29410130
    450571 6cfk:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 29410130
    450572 6cfk:1t (2.7) BS01 rna ? GO:0003723 ... P80380 29410130
    450573 6cfk:1y (2.7) BS01 rna ? GO:0005515 ... P0AD49 29410130
    450574 6cfk:1y (2.7) BS02 MG ? GO:0005515 ... P0AD49 29410130
    450575 6cfk:20 (2.7) BS01 rna ? GO:0003735 ... P60493 29410130
    450576 6cfk:20 (2.7) BS02 rna ? GO:0003735 ... P60493 29410130
    450577 6cfk:20 (2.7) BS03 MG ? GO:0003735 ... P60493 29410130
    450578 6cfk:21 (2.7) BS01 rna ? GO:0003735 ... P60494 29410130
    450579 6cfk:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 29410130
    450580 6cfk:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 29410130
    450581 6cfk:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 29410130
    450582 6cfk:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 29410130
    450583 6cfk:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 29410130
    450584 6cfk:25 (2.7) BS01 rna ? GO:0003735 ... P80339 29410130
    450585 6cfk:25 (2.7) BS02 MG ? GO:0003735 ... P80339 29410130
    450586 6cfk:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 29410130
    450587 6cfk:26 (2.7) BS01 rna ? GO:0000049 ... P35871 29410130
    450588 6cfk:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 29410130
    450589 6cfk:27 (2.7) BS01 rna ? GO:0003735 ... P80340 29410130
    450590 6cfk:27 (2.7) BS02 MG ? GO:0003735 ... P80340 29410130
    450591 6cfk:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 29410130
    450592 6cfk:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 29410130
    450593 6cfk:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 29410130
    450594 6cfk:2D (2.7) BS01 rna ? GO:0002181 ... P60405 29410130
    450595 6cfk:2D (2.7) BS02 rna ? GO:0002181 ... P60405 29410130
    450596 6cfk:2D (2.7) BS03 MG ? GO:0002181 ... P60405 29410130
    450597 6cfk:2D (2.7) BS04 MG ? GO:0002181 ... P60405 29410130
    450598 6cfk:2D (2.7) BS05 MG ? GO:0002181 ... P60405 29410130
    450599 6cfk:2D (2.7) BS06 MG ? GO:0002181 ... P60405 29410130
    450600 6cfk:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 29410130

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).