SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    451601 6cjt:C (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451602 6cjt:C (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451603 6cjt:D (3.46) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    451604 6cjt:D (3.46) BS02 PCG ? GO:0005221 ... G0GA88 30028291
    451605 6cjt:D (3.46) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451606 6cjt:D (3.46) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451607 6cju:A (3.35) BS01 CMP ? GO:0005221 ... G0GA88 30028291
    451608 6cju:A (3.35) BS02 PGW ? GO:0005221 ... G0GA88 30028291
    451609 6cju:A (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451610 6cju:A (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451611 6cju:A (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    451612 6cju:B (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    451613 6cju:B (3.35) BS02 CMP ? GO:0005221 ... G0GA88 30028291
    451614 6cju:B (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451615 6cju:B (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451616 6cju:B (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    451617 6cju:C (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    451618 6cju:C (3.35) BS02 CMP ? GO:0005221 ... G0GA88 30028291
    451619 6cju:C (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451620 6cju:C (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451621 6cju:C (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    451622 6cju:D (3.35) BS01 PGW ? GO:0005221 ... G0GA88 30028291
    451623 6cju:D (3.35) BS02 CMP ? GO:0005221 ... G0GA88 30028291
    451624 6cju:D (3.35) BS03 PGW ? GO:0005221 ... G0GA88 30028291
    451625 6cju:D (3.35) BS04 PGW ? GO:0005221 ... G0GA88 30028291
    451626 6cju:D (3.35) BS05 PGW ? GO:0005221 ... G0GA88 30028291
    451627 6cjv:A (1.547) BS01 RRY 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30034596
    451628 6cjv:A (1.547) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30034596
    451629 6cjw:A (3.38) BS01 FYV 2.7.11.1 GO:0004672 ... Q9HBH9 29526098
    451630 6cjx:B (2.44) BS01 FUC ? N/A Q6MZV7 32209433
    451631 6cjy:A (3.05) BS01 F4J 2.7.11.1 GO:0004672 ... Q9HBH9 29526098
    451632 6ck0:A (2.25) BS01 F5D ? GO:0004077 ... B5Z8D8 39704719
    451633 6ck0:B (2.25) BS01 F5D ? GO:0004077 ... B5Z8D8 39704719
    451634 6ck1:A (2.15) BS01 ZN ? N/A A1B2F4 31428696
    451635 6ck1:A (2.15) BS02 ZN ? N/A A1B2F4 31428696
    451636 6ck1:B (2.15) BS01 ZN ? N/A A1B2F4 31428696
    451637 6ck1:B (2.15) BS02 ZN ? N/A A1B2F4 31428696
    451638 6ck1:C (2.15) BS01 ZN ? N/A A1B2F4 31428696
    451639 6ck1:C (2.15) BS02 ZN ? N/A A1B2F4 31428696
    451640 6ck1:D (2.15) BS01 ZN ? N/A A1B2F4 31428696
    451641 6ck1:D (2.15) BS02 ZN ? N/A A1B2F4 31428696
    451642 6ck3:A (2.9) BS01 F67 2.7.11.1 GO:0004672 ... Q9HBH9 29526098 BindingDB: IC50=550nM
    451643 6ck6:A (3.32) BS01 ZN 2.7.11.1 GO:0004672 ... Q9HBH9 29526098
    451644 6ck6:A (3.32) BS02 N45 2.7.11.1 GO:0004672 ... Q9HBH9 29526098 BindingDB: IC50=1.000000nM, Ki=3.0nM
    451645 6ck7:A (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451646 6ck7:A (1.65) BS02 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451647 6ck7:B (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451648 6ck7:B (1.65) BS02 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451649 6ck7:C (1.65) BS01 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451650 6ck7:C (1.65) BS02 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451651 6ck7:C (1.65) BS03 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451652 6ck7:D (1.65) BS01 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451653 6ck7:D (1.65) BS02 ZN 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451654 6ck7:D (1.65) BS03 BB2 3.5.1.88 GO:0006412 ... Q5ZSC4 N/A
    451655 6ck9:D (2.714) BS01 MAN N/A N/A N/A 29642014
    451656 6ck9:D (2.714) BS02 MAN N/A N/A N/A 29642014
    451657 6ck9:H (2.714) BS01 MAN N/A N/A N/A 29642014
    451658 6ck9:L (2.714) BS01 MAN N/A N/A N/A 29642014
    451659 6ck9:L (2.714) BS02 MAN N/A N/A N/A 29642014
    451660 6ck9:L (2.714) BS03 MAN N/A N/A N/A 29642014
    451661 6ckb:A (2.8) BS01 MG ? N/A P05106
    P20701
    30018079
    451662 6ckb:B (2.8) BS01 CA ? N/A P05106
    P20701
    30018079
    451663 6ckc:A (2.8) BS01 F5J 2.1.1.320 GO:0000387 ... O14744 30034588 BindingDB: IC50=25nM, Kd=6.0nM, EC50=40nM
    451664 6cke:A (1.37) BS01 HEM ? GO:0004601 ... Q9NAV7 29949340
    451665 6cke:A (1.37) BS02 3Z7 ? GO:0004601 ... Q9NAV7 29949340 MOAD: Kd=374uM
    451666 6cke:B (1.37) BS01 HEM ? GO:0004601 ... Q9NAV7 29949340
    451667 6cki:A (2.95) BS01 FZJ 2.7.11.1 GO:0004672 ... Q9HBH9 29526098 BindingDB: IC50=55nM
    451668 6ckk:A (1.8) BS01 CTP 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451669 6ckk:B (1.8) BS01 CTP 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451670 6ckl:A (2.684) BS01 C5P 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451671 6ckl:A (2.684) BS02 DAN 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451672 6ckl:A (2.684) BS03 DAN 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451673 6ckl:B (2.684) BS01 DAN 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451674 6ckl:B (2.684) BS02 DAN 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451675 6ckl:B (2.684) BS03 C5P 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451676 6ckl:C (2.684) BS01 DAN 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451677 6ckl:C (2.684) BS02 C5P 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451678 6ckm:A (1.543) BS01 NCC 2.7.7.43 GO:0005737 ... P0A0Z8 31583886
    451679 6cko:A (2.0) BS01 ZN ? N/A P55197 29563185
    451680 6cko:B (2.0) BS01 ZN ? N/A P55197 29563185
    451681 6cko:C (2.0) BS01 ZN 2.1.1.360 N/A F1Q4W7 29563185
    451682 6ckr:A (1.62) BS01 F5V ? N/A O60885 29657099 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    451683 6ckr:B (1.62) BS01 F5V ? N/A O60885 29657099 MOAD: ic50=0.05uM
    BindingDB: IC50=50nM
    451684 6cks:A (1.72) BS01 F5Y ? N/A O60885 29657099 MOAD: ic50=0.015uM
    BindingDB: IC50=15nM
    451685 6ckw:A (2.06) BS01 F6D 2.7.7.3 GO:0003824 ... P0A6I6 29551072 MOAD: Kd=0.83nM
    451686 6ckw:B (2.06) BS01 F6D 2.7.7.3 GO:0003824 ... P0A6I6 29551072 MOAD: Kd=0.83nM
    451687 6ckx:A (2.8) BS01 MG 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 30067358
    451688 6ckx:A (2.8) BS02 8M1 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 30067358 BindingDB: IC50=13nM
    451689 6ckx:C (2.8) BS01 MG 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 30067358
    451690 6ckx:C (2.8) BS02 8M1 2.7.11.22
    2.7.11.23
    GO:0004672 ... Q9NYV4 30067358 BindingDB: IC50=13nM
    451691 6ckz:A (1.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 31334631
    451692 6ckz:B (1.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 31334631
    451693 6cl0:A (1.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 31334631
    451694 6cl0:B (1.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 31334631
    451695 6cl1:A (2.651) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451696 6cl1:B (2.651) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451697 6cl1:C (2.651) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451698 6cl1:D (2.651) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451699 6cl2:A (2.35) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451700 6cl2:B (2.35) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451701 6cl2:C (2.35) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451702 6cl2:D (2.35) BS01 peptide 3.4.22.60 GO:0004197 ... P55210 31334631
    451703 6cl5:A (2.324) BS01 FE ? N/A Q9KW03 30110933
    451704 6cl5:B (2.324) BS01 FE ? N/A Q9KW03 30110933
    451705 6cl5:C (2.324) BS01 FE ? N/A Q9KW03 30110933
    451706 6cl5:D (2.324) BS01 FE ? N/A Q9KW03 30110933
    451707 6cl5:E (2.324) BS01 FE ? N/A Q9KW03 30110933
    451708 6cl5:F (2.324) BS01 FE ? N/A Q9KW03 30110933
    451709 6cl6:A (1.898) BS01 FE ? N/A G3XD71 30110933
    451710 6cl6:A (1.898) BS02 CA ? N/A G3XD71 30110933
    451711 6cl6:B (1.898) BS01 FE ? N/A G3XD71 30110933
    451712 6cl6:B (1.898) BS02 CA ? N/A G3XD71 30110933
    451713 6cl6:C (1.898) BS01 FE ? N/A G3XD71 30110933
    451714 6cl6:C (1.898) BS02 CA ? N/A G3XD71 30110933
    451715 6cl6:D (1.898) BS01 FE ? N/A G3XD71 30110933
    451716 6cl6:D (1.898) BS02 CA ? N/A G3XD71 30110933
    451717 6cl6:E (1.898) BS01 FE ? N/A G3XD71 30110933
    451718 6cl6:E (1.898) BS02 CA ? N/A G3XD71 30110933
    451719 6cl6:F (1.898) BS01 FE ? N/A G3XD71 30110933
    451720 6cl6:F (1.898) BS02 CA ? N/A G3XD71 30110933
    451721 6clv:A (2.3) BS01 6MB 2.5.1.15 GO:0004156 ... O05701 30065703
    451722 6clv:B (2.3) BS01 6MB 2.5.1.15 GO:0004156 ... O05701 30065703
    451723 6clv:C (2.3) BS01 6MB 2.5.1.15 GO:0004156 ... O05701 30065703
    451724 6clx:A (2.73) BS01 SAM ? GO:0003824 ... A0A125SA05 32658465
    451725 6clx:B (2.73) BS01 SAM ? GO:0003824 ... A0A125SA05 32658465
    451726 6cly:A (2.186) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    451727 6cly:A (2.186) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    451728 6cly:A (2.186) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 N/A
    451729 6cm2:A (2.14) BS01 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451730 6cm2:A (2.14) BS02 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451731 6cm2:A (2.14) BS03 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451732 6cm2:A (2.14) BS04 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451733 6cm2:A (2.14) BS05 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451734 6cm2:B (2.14) BS01 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451735 6cm2:B (2.14) BS02 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451736 6cm2:B (2.14) BS03 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451737 6cm2:B (2.14) BS04 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451738 6cm2:B (2.14) BS05 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451739 6cm2:C (2.14) BS01 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451740 6cm2:C (2.14) BS02 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451741 6cm2:C (2.14) BS03 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451742 6cm2:C (2.14) BS04 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451743 6cm2:C (2.14) BS05 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451744 6cm2:D (2.14) BS01 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451745 6cm2:D (2.14) BS02 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451746 6cm2:D (2.14) BS03 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451747 6cm2:D (2.14) BS04 F6G 3.1.5.- N/A Q9Y3Z3 31375673
    451748 6cm2:D (2.14) BS05 GTP 3.1.5.- N/A Q9Y3Z3 31375673
    451749 6cm3:D (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    451750 6cm3:E (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    451751 6cm3:F (3.54) BS01 MAN ? GO:0019031 ... Q2N0S5 30308160
    451752 6cm3:P (3.54) BS01 BMA N/A N/A N/A 30308160
    451753 6cm3:P (3.54) BS02 MAN N/A N/A N/A 30308160
    451754 6cm3:P (3.54) BS03 MAN N/A N/A N/A 30308160
    451755 6cm3:P (3.54) BS04 MAN N/A N/A N/A 30308160
    451756 6cm3:R (3.54) BS01 BMA N/A N/A N/A 30308160
    451757 6cm3:R (3.54) BS02 MAN N/A N/A N/A 30308160
    451758 6cm3:R (3.54) BS03 MAN N/A N/A N/A 30308160
    451759 6cm3:R (3.54) BS04 MAN N/A N/A N/A 30308160
    451760 6cm3:T (3.54) BS01 BMA N/A N/A N/A 30308160
    451761 6cm3:T (3.54) BS02 MAN N/A N/A N/A 30308160
    451762 6cm3:T (3.54) BS03 MAN N/A N/A N/A 30308160
    451763 6cm3:T (3.54) BS04 MAN N/A N/A N/A 30308160
    451764 6cm4:A (2.867) BS01 8NU 3.2.1.17 GO:0003796 ... P00720
    P14416
    29466326
    451765 6cm9:C (3.73) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    451766 6cm9:C (3.73) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    451767 6cm9:H (3.73) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    451768 6cm9:H (3.73) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    451769 6cm9:M (3.73) BS01 peptide ? GO:0005515 ... P35585 30053425
    451770 6cm9:N (3.73) BS01 peptide ? GO:0005102 ... Q10589
    Q90VU7
    30053425
    451771 6cm9:S (3.73) BS01 peptide ? GO:0000139 ... Q96PC3 30053425
    451772 6cmc:A (3.671) BS01 CL ? GO:0005272 ... Q1XA76 30157194
    451773 6cme:A (1.92) BS01 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451774 6cme:A (1.92) BS02 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451775 6cme:A (1.92) BS03 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451776 6cme:A (1.92) BS04 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451777 6cme:B (1.92) BS01 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451778 6cme:B (1.92) BS02 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451779 6cme:B (1.92) BS03 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451780 6cme:B (1.92) BS04 ZN ? GO:0008270 ... P53776
    Q9CXV0
    30788856
    451781 6cmj:A (2.4) BS01 F6J 2.7.11.17 GO:0004672 ... Q96RR4 29653895 MOAD: ic50=5nM
    BindingDB: IC50=25nM
    451782 6cmj:B (2.4) BS01 F6J 2.7.11.17 GO:0004672 ... Q96RR4 29653895 MOAD: ic50=5nM
    BindingDB: IC50=25nM
    451783 6cmk:A (1.732) BS01 ZN ? N/A A8AF35 31428696
    451784 6cmk:A (1.732) BS02 ZN ? N/A A8AF35 31428696
    451785 6cmk:B (1.732) BS01 ZN ? N/A A8AF35 31428696
    451786 6cmk:B (1.732) BS02 ZN ? N/A A8AF35 31428696
    451787 6cml:A (2.7) BS01 MET 6.1.1.10 GO:0000166 ... Q38C91 N/A
    451788 6cml:B (2.7) BS01 96S 6.1.1.10 GO:0000166 ... Q38C91 N/A
    451789 6cmm:B (2.1) BS01 F7D 2.7.11.1 GO:0000785 ... Q99986 N/A
    451790 6cmm:D (2.1) BS01 F7D 2.7.11.1 GO:0000785 ... Q99986 N/A
    451791 6cmn:A (1.796) BS01 rna ? GO:0003676 ... G1TM83 29961805
    451792 6cmr:A (2.21) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 30375376 BindingDB: IC50=70.0nM
    451793 6cms:A (2.68) BS01 5OD 3.1.3.48 GO:0004725 ... Q06124 30375376 BindingDB: IC50=70.0nM
    451794 6cmw:A (3.15) BS01 ATP 2.7.1.68 GO:0046488 ... Q503I3 29959184
    451795 6cmz:A (2.3) BS01 FAD 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451796 6cmz:A (2.3) BS02 FAD 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451797 6cmz:A (2.3) BS03 FMN 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451798 6cmz:B (2.3) BS01 FAD 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451799 6cmz:B (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451800 6cmz:C (2.3) BS01 FAD 1.8.1.4 GO:0000166 ... B4EEF2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).