SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    451801 6cmz:C (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451802 6cmz:D (2.3) BS01 FAD 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451803 6cmz:D (2.3) BS02 ADP 1.8.1.4 GO:0000166 ... B4EEF2 N/A
    451804 6cn1:A (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451805 6cn1:A (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451806 6cn1:B (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451807 6cn1:B (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451808 6cn1:C (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451809 6cn1:C (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451810 6cn1:D (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451811 6cn1:D (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451812 6cn1:E (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451813 6cn1:E (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451814 6cn1:F (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451815 6cn1:F (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451816 6cn1:G (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451817 6cn1:G (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451818 6cn1:H (2.75) BS01 EPU 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451819 6cn1:H (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    451820 6cn2:A (3.102) BS01 ATP 2.7.1.68 GO:0046488 ... Q503I3 29959184
    451821 6cn2:A (3.102) BS02 CA 2.7.1.68 GO:0046488 ... Q503I3 29959184
    451822 6cn5:A (2.3) BS01 F7M ? GO:0003677 ... P51449 30130103 MOAD: Ki=0.02uM
    BindingDB: IC50=120nM, Ki=20nM
    451823 6cn5:B (2.3) BS01 F7M ? GO:0003677 ... P51449 30130103 MOAD: Ki=0.02uM
    BindingDB: IC50=120nM, Ki=20nM
    451824 6cn6:A (2.45) BS01 F7J ? GO:0003677 ... P51449 30130103 MOAD: ic50=5nM
    BindingDB: IC50=5.0nM
    451825 6cn8:A (1.4) BS01 peptide ? N/A P9WPC9 30990022
    451826 6cnb:A (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    451827 6cnb:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451828 6cnb:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451829 6cnb:B (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451830 6cnb:B (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    451831 6cnb:E (4.1) BS01 dna ? GO:0000428 ... P20434 30083386
    451832 6cnb:I (4.1) BS01 ZN ? GO:0000428 ... Q04307 30083386
    451833 6cnb:J (4.1) BS01 ZN ? GO:0000428 ... P22139 30083386
    451834 6cnb:L (4.1) BS01 ZN ? GO:0000428 ... P40422 30083386
    451835 6cnb:P (4.1) BS01 dna ? GO:0000428 ... P32910 30083386
    451836 6cnb:R (4.1) BS01 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451837 6cnb:R (4.1) BS02 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451838 6cnb:R (4.1) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    451839 6cnb:S (4.1) BS01 dna ? GO:0000126 ... P46678 30083386
    451840 6cnb:S (4.1) BS02 dna ? GO:0000126 ... P46678 30083386
    451841 6cnc:A (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    451842 6cnc:A (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451843 6cnc:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451844 6cnc:B (4.1) BS01 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451845 6cnc:I (4.1) BS01 ZN ? GO:0000428 ... Q04307 30083386
    451846 6cnc:J (4.1) BS01 ZN ? GO:0000428 ... P22139 30083386
    451847 6cnc:L (4.1) BS01 ZN ? GO:0000428 ... P40422 30083386
    451848 6cnc:O (4.1) BS01 dna ? GO:0000428 ... P32349 30083386
    451849 6cnc:P (4.1) BS01 dna ? GO:0000428 ... P32910 30083386
    451850 6cnc:R (4.1) BS01 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451851 6cnc:R (4.1) BS02 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451852 6cnc:R (4.1) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    451853 6cnc:S (4.1) BS01 dna ? GO:0000126 ... P46678 30083386
    451854 6cnc:S (4.1) BS02 dna ? GO:0000126 ... P46678 30083386
    451855 6cnd:A (4.8) BS01 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    451856 6cnd:A (4.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451857 6cnd:A (4.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451858 6cnd:B (4.8) BS01 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451859 6cnd:B (4.8) BS02 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451860 6cnd:B (4.8) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    451861 6cnd:I (4.8) BS01 ZN ? GO:0000428 ... Q04307 30083386
    451862 6cnd:J (4.8) BS01 ZN ? GO:0000428 ... P22139 30083386
    451863 6cnd:L (4.8) BS01 ZN ? GO:0000428 ... P40422 30083386
    451864 6cnd:O (4.8) BS01 dna ? GO:0000428 ... P32349 30083386
    451865 6cnd:P (4.8) BS01 dna ? GO:0000428 ... P32910 30083386
    451866 6cnd:R (4.8) BS01 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451867 6cnd:R (4.8) BS02 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451868 6cnd:R (4.8) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    451869 6cnd:S (4.8) BS01 dna ? GO:0000126 ... P46678 30083386
    451870 6cnd:S (4.8) BS02 dna ? GO:0000126 ... P46678 30083386
    451871 6cnf:A (4.5) BS01 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    451872 6cnf:A (4.5) BS02 dna 2.7.7.6 GO:0000428 ... P04051 30083386
    451873 6cnf:A (4.5) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451874 6cnf:A (4.5) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 30083386
    451875 6cnf:B (4.5) BS01 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451876 6cnf:B (4.5) BS02 dna 2.7.7.6 GO:0000428 ... P22276 30083386
    451877 6cnf:B (4.5) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 30083386
    451878 6cnf:I (4.5) BS01 ZN ? GO:0000428 ... Q04307 30083386
    451879 6cnf:J (4.5) BS01 ZN ? GO:0000428 ... P22139 30083386
    451880 6cnf:L (4.5) BS01 ZN ? GO:0000428 ... P40422 30083386
    451881 6cnf:P (4.5) BS01 dna ? GO:0000428 ... P32910 30083386
    451882 6cnf:R (4.5) BS01 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451883 6cnf:R (4.5) BS02 dna ? GO:0003677 ... P13393
    P29056    		 30083386
    451884 6cnf:R (4.5) BS03 ZN ? GO:0003677 ... P13393
    P29056    		 30083386
    451885 6cnf:S (4.5) BS01 dna ? GO:0000126 ... P46678 30083386
    451886 6cnf:S (4.5) BS02 dna ? GO:0000126 ... P46678 30083386
    451887 6cng:A (1.47) BS01 EIC ? GO:0008289 ... Q8DQI6 N/A
    451888 6cng:D (1.47) BS01 EIC ? GO:0008289 ... Q8DQI6 N/A
    451889 6cnh:A (2.0) BS01 919 2.7.11.1 GO:0004672 ... Q13523 N/A
    451890 6cnj:A (3.7) BS01 NCT ? GO:0004888 ... P43681 29720657 BindingDB: Ki=2nM, IC50=430nM, EC50=2400nM
    451891 6cnj:A (3.7) BS02 Y01 ? GO:0004888 ... P43681 29720657
    451892 6cnj:B (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    451893 6cnj:B (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    451894 6cnj:C (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    451895 6cnj:C (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    451896 6cnj:D (3.7) BS01 NCT ? GO:0004888 ... P43681 29720657 BindingDB: Ki=2nM, IC50=430nM, EC50=2400nM
    451897 6cnj:D (3.7) BS02 Y01 ? GO:0004888 ... P43681 29720657
    451898 6cnj:D (3.7) BS03 Y01 ? GO:0004888 ... P43681 29720657
    451899 6cnj:E (3.7) BS01 Y01 ? GO:0004888 ... P17787 29720657
    451900 6cnj:E (3.7) BS02 Y01 ? GO:0004888 ... P17787 29720657
    451901 6cnk:A (3.9) BS01 Y01 ? GO:0004888 ... P43681 29720657
    451902 6cnk:A (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    451903 6cnk:A (3.9) BS03 NCT ? GO:0004888 ... P43681 29720657 BindingDB: Ki=2nM, IC50=430nM, EC50=2400nM
    451904 6cnk:B (3.9) BS01 NCT ? GO:0004888 ... P43681 29720657 BindingDB: Ki=2nM, IC50=430nM, EC50=2400nM
    451905 6cnk:B (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    451906 6cnk:C (3.9) BS01 Y01 ? GO:0004888 ... P17787 29720657
    451907 6cnk:C (3.9) BS02 Y01 ? GO:0004888 ... P17787 29720657
    451908 6cnk:D (3.9) BS01 NCT ? GO:0004888 ... P43681 29720657 BindingDB: Ki=2nM, IC50=430nM, EC50=2400nM
    451909 6cnk:D (3.9) BS02 Y01 ? GO:0004888 ... P43681 29720657
    451910 6cnk:D (3.9) BS03 Y01 ? GO:0004888 ... P43681 29720657
    451911 6cnk:E (3.9) BS01 Y01 ? GO:0004888 ... P17787 29720657
    451912 6cnk:E (3.9) BS02 Y01 ? GO:0004888 ... P17787 29720657
    451913 6cnl:A (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451914 6cnl:A (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451915 6cnl:A (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451916 6cnl:A (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451917 6cnl:B (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451918 6cnl:B (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451919 6cnl:B (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451920 6cnl:B (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451921 6cnl:C (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451922 6cnl:C (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451923 6cnl:C (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451924 6cnl:C (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451925 6cnl:C (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451926 6cnl:C (2.6) BS06 MG 3.1.3.16 N/A Q96HS1 30705304
    451927 6cnl:C (2.6) BS07 MG 3.1.3.16 N/A Q96HS1 30705304
    451928 6cnl:D (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451929 6cnl:D (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451930 6cnl:D (2.6) BS03 MG 3.1.3.16 N/A Q96HS1 30705304
    451931 6cnl:D (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451932 6cnl:D (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451933 6cnl:E (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451934 6cnl:E (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451935 6cnl:E (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451936 6cnl:E (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451937 6cnl:F (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451938 6cnl:F (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451939 6cnl:F (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451940 6cnl:F (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451941 6cnl:F (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451942 6cnl:F (2.6) BS06 MG 3.1.3.16 N/A Q96HS1 30705304
    451943 6cnl:F (2.6) BS07 MG 3.1.3.16 N/A Q96HS1 30705304
    451944 6cnl:G (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451945 6cnl:G (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451946 6cnl:G (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451947 6cnl:G (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451948 6cnl:G (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451949 6cnl:H (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451950 6cnl:H (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451951 6cnl:H (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451952 6cnl:H (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451953 6cnl:I (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451954 6cnl:I (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451955 6cnl:I (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451956 6cnl:I (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451957 6cnl:I (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451958 6cnl:J (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451959 6cnl:J (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451960 6cnl:J (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451961 6cnl:J (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451962 6cnl:J (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451963 6cnl:K (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451964 6cnl:K (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451965 6cnl:K (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451966 6cnl:K (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451967 6cnl:L (2.6) BS01 peptide 3.1.3.16 N/A Q96HS1 30705304
    451968 6cnl:L (2.6) BS02 peptide 3.1.3.16 N/A Q96HS1 30705304
    451969 6cnl:L (2.6) BS03 peptide 3.1.3.16 N/A Q96HS1 30705304
    451970 6cnl:L (2.6) BS04 MG 3.1.3.16 N/A Q96HS1 30705304
    451971 6cnl:L (2.6) BS05 MG 3.1.3.16 N/A Q96HS1 30705304
    451972 6cnn:E (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451973 6cnn:E (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451974 6cnn:E (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451975 6cnn:F (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451976 6cnn:F (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451977 6cnn:F (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451978 6cnn:G (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451979 6cnn:G (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451980 6cnn:G (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451981 6cnn:H (3.5) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451982 6cnn:H (3.5) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451983 6cnn:H (3.5) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451984 6cno:E (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451985 6cno:E (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451986 6cno:E (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451987 6cno:F (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451988 6cno:F (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451989 6cno:F (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451990 6cno:G (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451991 6cno:G (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451992 6cno:G (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451993 6cno:H (4.7) BS01 CA ? GO:0000086 ... P0DP23 29724949
    451994 6cno:H (4.7) BS02 CA ? GO:0000086 ... P0DP23 29724949
    451995 6cno:H (4.7) BS03 CA ? GO:0000086 ... P0DP23 29724949
    451996 6cnp:A (2.1) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    451997 6cnp:A (2.1) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    451998 6cnp:A (2.1) BS03 CA ? GO:0003677 ... Q9UBB5 29567833
    451999 6cnp:B (2.1) BS01 dna ? GO:0003677 ... Q9UBB5 29567833
    452000 6cnp:B (2.1) BS02 dna ? GO:0003677 ... Q9UBB5 29567833
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).