SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    453801 6d55:A (1.68) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453802 6d55:A (1.68) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453803 6d55:B (1.68) BS01 FWA ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=5900nM, Kd=44nM
    453804 6d56:A (1.68) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453805 6d56:A (1.68) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453806 6d56:B (1.68) BS01 FVM ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=21100nM, Kd=9.0nM
    453807 6d57:A (1.81) BS01 ZN ? GO:0000976 ... A0A1E7PHN7 29739988
    453808 6d57:B (1.81) BS01 ZN ? GO:0000976 ... A0A1E7PHN7 29739988
    453809 6d58:A (2.39) BS01 BMA ? N/A P01860 N/A
    453810 6d58:B (2.39) BS01 BMA ? N/A P01860 N/A
    453811 6d59:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453812 6d59:A (1.7) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453813 6d59:B (1.7) BS01 FVJ ? GO:0005085 ... Q07889 30205005 BindingDB: Kd=<100nM, EC50=15600nM
    453814 6d5b:A (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453815 6d5b:B (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453816 6d5b:C (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453817 6d5b:D (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453818 6d5b:E (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453819 6d5b:F (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453820 6d5b:G (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453821 6d5b:H (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453822 6d5b:I (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453823 6d5b:J (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453824 6d5b:K (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453825 6d5b:L (2.0) BS01 CA 3.2.1.- GO:0005975 ... A0A4V8GZQ7 N/A
    453826 6d5d:A (1.9) BS01 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    453827 6d5d:A (1.9) BS02 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    453828 6d5d:A (1.9) BS03 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    453829 6d5d:A (1.9) BS04 BGC 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    453830 6d5d:A (1.9) BS05 CA 3.2.1.- GO:0004553 ... A0A4V8GZQ9 N/A
    453831 6d5e:A (1.75) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453832 6d5e:A (1.75) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453833 6d5e:B (1.75) BS01 FVG ? GO:0005085 ... Q07889 30205005 BindingDB: Kd=140nM, EC50=3200nM
    453834 6d5f:A (3.7) BS01 dna N/A N/A N/A 30135568
    453835 6d5f:A (3.7) BS02 dna N/A N/A N/A 30135568
    453836 6d5f:B (3.7) BS01 dna N/A N/A N/A 30135568
    453837 6d5f:B (3.7) BS02 dna N/A N/A N/A 30135568
    453838 6d5f:C (3.7) BS01 dna N/A N/A N/A 30135568
    453839 6d5f:C (3.7) BS02 dna N/A N/A N/A 30135568
    453840 6d5f:D (3.7) BS01 dna N/A N/A N/A 30135568
    453841 6d5f:D (3.7) BS02 dna N/A N/A N/A 30135568
    453842 6d5f:E (3.7) BS01 dna N/A N/A N/A 30135568
    453843 6d5f:E (3.7) BS02 dna N/A N/A N/A 30135568
    453844 6d5f:F (3.7) BS01 dna N/A N/A N/A 30135568
    453845 6d5f:F (3.7) BS02 dna N/A N/A N/A 30135568
    453846 6d5f:G (3.7) BS01 dna N/A N/A N/A 30135568
    453847 6d5f:G (3.7) BS02 dna N/A N/A N/A 30135568
    453848 6d5f:H (3.7) BS01 dna N/A N/A N/A 30135568
    453849 6d5f:H (3.7) BS02 dna N/A N/A N/A 30135568
    453850 6d5f:I (3.7) BS01 dna N/A N/A N/A 30135568
    453851 6d5f:I (3.7) BS02 dna N/A N/A N/A 30135568
    453852 6d5f:J (3.7) BS01 dna N/A N/A N/A 30135568
    453853 6d5f:J (3.7) BS02 dna N/A N/A N/A 30135568
    453854 6d5f:K (3.7) BS01 dna N/A N/A N/A 30135568
    453855 6d5f:K (3.7) BS02 dna N/A N/A N/A 30135568
    453856 6d5f:L (3.7) BS01 dna N/A N/A N/A 30135568
    453857 6d5f:L (3.7) BS02 dna N/A N/A N/A 30135568
    453858 6d5f:M (3.7) BS01 dna N/A N/A N/A 30135568
    453859 6d5f:M (3.7) BS02 dna N/A N/A N/A 30135568
    453860 6d5f:N (3.7) BS01 dna N/A N/A N/A 30135568
    453861 6d5f:N (3.7) BS02 dna N/A N/A N/A 30135568
    453862 6d5f:O (3.7) BS01 dna N/A N/A N/A 30135568
    453863 6d5f:O (3.7) BS02 dna N/A N/A N/A 30135568
    453864 6d5f:P (3.7) BS01 dna N/A N/A N/A 30135568
    453865 6d5f:P (3.7) BS02 dna N/A N/A N/A 30135568
    453866 6d5f:Q (3.7) BS01 dna N/A N/A N/A 30135568
    453867 6d5f:Q (3.7) BS02 dna N/A N/A N/A 30135568
    453868 6d5f:R (3.7) BS01 dna N/A N/A N/A 30135568
    453869 6d5f:R (3.7) BS02 dna N/A N/A N/A 30135568
    453870 6d5f:S (3.7) BS01 dna N/A N/A N/A 30135568
    453871 6d5f:S (3.7) BS02 dna N/A N/A N/A 30135568
    453872 6d5f:T (3.7) BS01 dna N/A N/A N/A 30135568
    453873 6d5f:T (3.7) BS02 dna N/A N/A N/A 30135568
    453874 6d5f:U (3.7) BS01 dna N/A N/A N/A 30135568
    453875 6d5f:U (3.7) BS02 dna N/A N/A N/A 30135568
    453876 6d5f:V (3.7) BS01 dna N/A N/A N/A 30135568
    453877 6d5f:V (3.7) BS02 dna N/A N/A N/A 30135568
    453878 6d5f:W (3.7) BS01 dna N/A N/A N/A 30135568
    453879 6d5f:W (3.7) BS02 dna N/A N/A N/A 30135568
    453880 6d5f:X (3.7) BS01 dna N/A N/A N/A 30135568
    453881 6d5f:X (3.7) BS02 dna N/A N/A N/A 30135568
    453882 6d5f:Y (3.7) BS01 dna N/A N/A N/A 30135568
    453883 6d5f:Y (3.7) BS02 dna N/A N/A N/A 30135568
    453884 6d5f:Z (3.7) BS01 dna N/A N/A N/A 30135568
    453885 6d5f:Z (3.7) BS02 dna N/A N/A N/A 30135568
    453886 6d5f:a (3.7) BS01 dna N/A N/A N/A 30135568
    453887 6d5f:a (3.7) BS02 dna N/A N/A N/A 30135568
    453888 6d5f:b (3.7) BS01 dna N/A N/A N/A 30135568
    453889 6d5f:b (3.7) BS02 dna N/A N/A N/A 30135568
    453890 6d5f:c (3.7) BS01 dna N/A N/A N/A 30135568
    453891 6d5f:c (3.7) BS02 dna N/A N/A N/A 30135568
    453892 6d5f:d (3.7) BS01 dna N/A N/A N/A 30135568
    453893 6d5f:d (3.7) BS02 dna N/A N/A N/A 30135568
    453894 6d5f:e (3.7) BS01 dna N/A N/A N/A 30135568
    453895 6d5f:e (3.7) BS02 dna N/A N/A N/A 30135568
    453896 6d5f:f (3.7) BS01 dna N/A N/A N/A 30135568
    453897 6d5f:f (3.7) BS02 dna N/A N/A N/A 30135568
    453898 6d5f:g (3.7) BS01 dna N/A N/A N/A 30135568
    453899 6d5f:g (3.7) BS02 dna N/A N/A N/A 30135568
    453900 6d5f:h (3.7) BS01 dna N/A N/A N/A 30135568
    453901 6d5f:h (3.7) BS02 dna N/A N/A N/A 30135568
    453902 6d5f:i (3.7) BS01 dna N/A N/A N/A 30135568
    453903 6d5f:i (3.7) BS02 dna N/A N/A N/A 30135568
    453904 6d5f:j (3.7) BS01 dna N/A N/A N/A 30135568
    453905 6d5f:j (3.7) BS02 dna N/A N/A N/A 30135568
    453906 6d5f:k (3.7) BS01 dna N/A N/A N/A 30135568
    453907 6d5f:k (3.7) BS02 dna N/A N/A N/A 30135568
    453908 6d5f:l (3.7) BS01 dna N/A N/A N/A 30135568
    453909 6d5f:l (3.7) BS02 dna N/A N/A N/A 30135568
    453910 6d5f:m (3.7) BS01 dna N/A N/A N/A 30135568
    453911 6d5f:m (3.7) BS02 dna N/A N/A N/A 30135568
    453912 6d5f:n (3.7) BS01 dna N/A N/A N/A 30135568
    453913 6d5f:n (3.7) BS02 dna N/A N/A N/A 30135568
    453914 6d5f:o (3.7) BS01 dna N/A N/A N/A 30135568
    453915 6d5f:o (3.7) BS02 dna N/A N/A N/A 30135568
    453916 6d5f:p (3.7) BS01 dna N/A N/A N/A 30135568
    453917 6d5f:p (3.7) BS02 dna N/A N/A N/A 30135568
    453918 6d5f:q (3.7) BS01 dna N/A N/A N/A 30135568
    453919 6d5f:q (3.7) BS02 dna N/A N/A N/A 30135568
    453920 6d5f:r (3.7) BS01 dna N/A N/A N/A 30135568
    453921 6d5f:r (3.7) BS02 dna N/A N/A N/A 30135568
    453922 6d5f:s (3.7) BS01 dna N/A N/A N/A 30135568
    453923 6d5f:s (3.7) BS02 dna N/A N/A N/A 30135568
    453924 6d5f:t (3.7) BS01 dna N/A N/A N/A 30135568
    453925 6d5f:t (3.7) BS02 dna N/A N/A N/A 30135568
    453926 6d5f:u (3.7) BS01 dna N/A N/A N/A 30135568
    453927 6d5f:u (3.7) BS02 dna N/A N/A N/A 30135568
    453928 6d5f:v (3.7) BS01 dna N/A N/A N/A 30135568
    453929 6d5f:v (3.7) BS02 dna N/A N/A N/A 30135568
    453930 6d5f:w (3.7) BS01 dna N/A N/A N/A 30135568
    453931 6d5f:w (3.7) BS02 dna N/A N/A N/A 30135568
    453932 6d5f:x (3.7) BS01 dna N/A N/A N/A 30135568
    453933 6d5f:x (3.7) BS02 dna N/A N/A N/A 30135568
    453934 6d5f:y (3.7) BS01 dna N/A N/A N/A 30135568
    453935 6d5f:y (3.7) BS02 dna N/A N/A N/A 30135568
    453936 6d5f:z (3.7) BS01 dna N/A N/A N/A 30135568
    453937 6d5f:z (3.7) BS02 dna N/A N/A N/A 30135568
    453938 6d5g:A (1.92) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453939 6d5g:A (1.92) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453940 6d5g:B (1.92) BS01 FVD ? GO:0005085 ... Q07889 30205005 BindingDB: Kd=250nM
    453941 6d5h:A (1.8) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453942 6d5h:A (1.8) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453943 6d5h:B (1.8) BS01 FV7 ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=11000nM, Kd=120nM
    453944 6d5j:A (1.751) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453945 6d5j:A (1.751) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453946 6d5j:B (1.751) BS01 FV4 ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=14500nM, Kd=460nM
    453947 6d5k:A (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    453948 6d5k:A (2.85) BS02 B12 2.5.1.- N/A Q96EY8 30282455
    453949 6d5k:B (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    453950 6d5k:B (2.85) BS02 ATP 2.5.1.- N/A Q96EY8 30282455
    453951 6d5k:C (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    453952 6d5k:C (2.85) BS02 ATP 2.5.1.- N/A Q96EY8 30282455
    453953 6d5l:A (1.7) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453954 6d5l:A (1.7) BS02 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453955 6d5l:B (1.7) BS01 FW7 ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=1000nM
    453956 6d5m:Q (2.081) BS01 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    453957 6d5m:Q (2.081) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    453958 6d5m:S (2.081) BS01 FW4 ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=2200nM
    453959 6d5n:A (2.00004) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    453960 6d5n:A (2.00004) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    453961 6d5n:A (2.00004) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    453962 6d5n:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453963 6d5n:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453964 6d5n:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453965 6d5n:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453966 6d5n:A (2.00004) BS08 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    453967 6d5o:A (2.00005) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    453968 6d5o:A (2.00005) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    453969 6d5o:A (2.00005) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    453970 6d5o:A (2.00005) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453971 6d5o:A (2.00005) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453972 6d5o:A (2.00005) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453973 6d5o:A (2.00005) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453974 6d5p:A (3.00011) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    453975 6d5p:A (3.00011) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    453976 6d5p:A (3.00011) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    453977 6d5p:A (3.00011) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453978 6d5p:A (3.00011) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453979 6d5p:A (3.00011) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453980 6d5p:A (3.00011) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453981 6d5p:A (3.00011) BS08 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    453982 6d5p:A (3.00011) BS09 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    453983 6d5q:A (2.00016) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    453984 6d5q:A (2.00016) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    453985 6d5q:A (2.00016) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    453986 6d5q:A (2.00016) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453987 6d5q:A (2.00016) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453988 6d5q:A (2.00016) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453989 6d5q:A (2.00016) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453990 6d5q:A (2.00016) BS08 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    453991 6d5r:A (2.00002) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    453992 6d5r:A (2.00002) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    453993 6d5r:A (2.00002) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    453994 6d5r:A (2.00002) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453995 6d5r:A (2.00002) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453996 6d5r:A (2.00002) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453997 6d5r:A (2.00002) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    453998 6d5r:A (2.00002) BS08 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    453999 6d5r:A (2.00002) BS09 XYP 3.4.24.27 GO:0004222 ... P00800 30198901
    454000 6d5r:A (2.00002) BS10 XYP 3.4.24.27 GO:0004222 ... P00800 30198901

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).