SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    454001 6d5s:A (2.00004) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    454002 6d5s:A (2.00004) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    454003 6d5s:A (2.00004) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    454004 6d5s:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454005 6d5s:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454006 6d5s:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454007 6d5s:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454008 6d5t:A (2.00004) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    454009 6d5t:A (2.00004) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    454010 6d5t:A (2.00004) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    454011 6d5t:A (2.00004) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454012 6d5t:A (2.00004) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454013 6d5t:A (2.00004) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454014 6d5t:A (2.00004) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454015 6d5u:A (2.0001) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 30198901
    454016 6d5u:A (2.0001) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 30198901
    454017 6d5u:A (2.0001) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    454018 6d5u:A (2.0001) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454019 6d5u:A (2.0001) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454020 6d5u:A (2.0001) BS06 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454021 6d5u:A (2.0001) BS07 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    454022 6d5v:Q (2.04) BS01 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    454023 6d5v:Q (2.04) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    454024 6d5v:S (2.04) BS01 FVY ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=18700nM
    454025 6d5w:Q (2.478) BS01 MG 3.6.5.2 GO:0003924 ... P01112 30205005
    454026 6d5w:Q (2.478) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 30205005
    454027 6d5w:S (2.478) BS01 FVV ? GO:0005085 ... Q07889 30205005 BindingDB: EC50=63000nM
    454028 6d5x:A (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    454029 6d5x:A (2.4) BS02 3PO 2.5.1.- N/A Q96EY8 30282455
    454030 6d5x:A (2.4) BS03 B12 2.5.1.- N/A Q96EY8 30282455
    454031 6d5x:B (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    454032 6d5x:B (2.4) BS02 ATP 2.5.1.- N/A Q96EY8 30282455
    454033 6d5x:C (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    454034 6d5x:C (2.4) BS02 3PO 2.5.1.- N/A Q96EY8 30282455
    454035 6d5x:C (2.4) BS03 ATP 2.5.1.- N/A Q96EY8 30282455
    454036 6d60:A (2.22) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454037 6d60:A (2.22) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454038 6d61:A (1.74) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454039 6d61:A (1.74) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454040 6d61:A (1.74) BS03 4AA 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454041 6d62:A (1.77) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454042 6d62:A (1.77) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454043 6d62:A (1.77) BS03 3HA 1.13.11.6 GO:0000334 ... Q1LCS4 29784877
    454044 6d63:A (2.3) BS01 6JN N/A N/A N/A 30399173
    454045 6d63:B (2.3) BS01 6JN N/A N/A N/A 30399173
    454046 6d63:J (2.3) BS01 6JN N/A N/A N/A 30399173
    454047 6d64:A (1.7) BS01 CUY ? N/A P29016 30610190
    454048 6d67:A (2.55) BS01 GLC 3.1.3.16
    3.1.3.48
    GO:0005515 ... P0AEX9
    P28562
    30198887
    454049 6d67:A (2.55) BS02 GLC 3.1.3.16
    3.1.3.48
    GO:0005515 ... P0AEX9
    P28562
    30198887
    454050 6d6a:A (1.9) BS01 FXD ? N/A P25084 30033130
    454051 6d6a:B (1.9) BS01 FXD ? N/A P25084 30033130
    454052 6d6a:C (1.9) BS01 FXD ? N/A P25084 30033130
    454053 6d6a:D (1.9) BS01 FXD ? N/A P25084 30033130
    454054 6d6a:E (1.9) BS01 FXD ? N/A P25084 30033130
    454055 6d6a:F (1.9) BS01 FXD ? N/A P25084 30033130
    454056 6d6a:G (1.9) BS01 FXD ? N/A P25084 30033130
    454057 6d6a:H (1.9) BS01 FXD ? N/A P25084 30033130
    454058 6d6b:A (1.7) BS01 FXS ? N/A P25084 30033130
    454059 6d6b:B (1.7) BS01 FXS ? N/A P25084 30033130
    454060 6d6b:C (1.7) BS01 FXS ? N/A P25084 30033130
    454061 6d6b:D (1.7) BS01 FXS ? N/A P25084 30033130
    454062 6d6b:E (1.7) BS01 FXS ? N/A P25084 30033130
    454063 6d6b:F (1.7) BS01 FXS ? N/A P25084 30033130
    454064 6d6b:G (1.7) BS01 FXS ? N/A P25084 30033130
    454065 6d6b:H (1.7) BS01 FXS ? N/A P25084 30033130
    454066 6d6c:A (1.88) BS01 FYD ? N/A P25084 30033130
    454067 6d6c:B (1.88) BS01 FYD ? N/A P25084 30033130
    454068 6d6c:C (1.88) BS01 FYD ? N/A P25084 30033130
    454069 6d6c:D (1.88) BS01 FYD ? N/A P25084 30033130
    454070 6d6c:E (1.88) BS01 FYD ? N/A P25084 30033130
    454071 6d6c:F (1.88) BS01 FYD ? N/A P25084 30033130
    454072 6d6c:G (1.88) BS01 FYD ? N/A P25084 30033130
    454073 6d6c:H (1.88) BS01 FYD ? N/A P25084 30033130
    454074 6d6c:I (1.88) BS01 FYD ? N/A P25084 30033130
    454075 6d6c:J (1.88) BS01 FYD ? N/A P25084 30033130
    454076 6d6c:K (1.88) BS01 FYD ? N/A P25084 30033130
    454077 6d6c:L (1.88) BS01 FYD ? N/A P25084 30033130
    454078 6d6d:A (1.7) BS01 FY7 ? N/A P25084 30033130
    454079 6d6d:B (1.7) BS01 FY7 ? N/A P25084 30033130
    454080 6d6f:A (2.0) BS01 XYS 3.2.1.17 GO:0003796 ... P00698 30198901
    454081 6d6j:A (1.35) BS01 ZN ? GO:0003824 ... Q5ZRW1 N/A
    454082 6d6j:B (1.35) BS01 ZN ? GO:0003824 ... Q5ZRW1 N/A
    454083 6d6l:A (1.63) BS01 FY4 ? N/A P25084 30033130
    454084 6d6l:B (1.63) BS01 FY4 ? N/A P25084 30033130
    454085 6d6l:C (1.63) BS01 FY4 ? N/A P25084 30033130
    454086 6d6l:D (1.63) BS01 FY4 ? N/A P25084 30033130
    454087 6d6m:A (1.9) BS01 TX7 ? N/A P25084 30033130
    454088 6d6m:B (1.9) BS01 TX7 ? N/A P25084 30033130
    454089 6d6m:C (1.9) BS01 TX7 ? N/A P25084 30033130
    454090 6d6m:D (1.9) BS01 TX7 ? N/A P25084 30033130
    454091 6d6n:A (1.81) BS01 FXJ ? N/A P25084 30033130
    454092 6d6n:B (1.81) BS01 FXJ ? N/A P25084 30033130
    454093 6d6n:C (1.81) BS01 PHE ? N/A P25084 30033130
    454094 6d6n:C (1.81) BS02 FXJ ? N/A P25084 30033130
    454095 6d6n:D (1.81) BS01 FXJ ? N/A P25084 30033130
    454096 6d6o:A (1.65) BS01 FX7 ? N/A P25084 30033130
    454097 6d6o:B (1.65) BS01 FX7 ? N/A P25084 30033130
    454098 6d6o:C (1.65) BS01 FX7 ? N/A P25084 30033130
    454099 6d6o:D (1.65) BS01 FX7 ? N/A P25084 30033130
    454100 6d6p:A (1.65) BS01 FY1 ? N/A P25084 30033130
    454101 6d6p:B (1.65) BS01 FY1 ? N/A P25084 30033130
    454102 6d6p:C (1.65) BS01 FY1 ? N/A P25084 30033130
    454103 6d6p:D (1.65) BS01 FY1 ? N/A P25084 30033130
    454104 6d6q:A (3.45) BS01 rna ? GO:0000178 ... Q06265 29906447
    454105 6d6q:B (3.45) BS01 rna ? GO:0000175 ... Q9NPD3 29906447
    454106 6d6q:C (3.45) BS01 peptide ? GO:0000176 ... Q96B26 29906447
    454107 6d6q:F (3.45) BS01 peptide ? GO:0000176 ... Q5RKV6 29906447
    454108 6d6q:H (3.45) BS01 rna ? GO:0000175 ... Q13868 29906447
    454109 6d6q:K (3.45) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000175 ... Q9Y2L1 29906447
    454110 6d6q:K (3.45) BS02 ZN 3.1.13.-
    3.1.26.-
    GO:0000175 ... Q9Y2L1 29906447
    454111 6d6q:M (3.45) BS01 rna 3.6.4.13 GO:0000176 ... P42285 29906447
    454112 6d6q:M (3.45) BS02 ANP 3.6.4.13 GO:0000176 ... P42285 29906447
    454113 6d6r:A (3.45) BS01 rna ? GO:0000178 ... Q06265 29906447
    454114 6d6r:B (3.45) BS01 rna ? GO:0000175 ... Q9NPD3 29906447
    454115 6d6r:C (3.45) BS01 peptide ? GO:0000176 ... Q96B26 29906447
    454116 6d6r:F (3.45) BS01 peptide ? GO:0000176 ... Q5RKV6 29906447
    454117 6d6r:H (3.45) BS01 rna ? GO:0000175 ... Q13868 29906447
    454118 6d6r:K (3.45) BS01 rna 3.1.13.-
    3.1.26.-
    GO:0000175 ... Q9Y2L1 29906447
    454119 6d6r:K (3.45) BS02 ZN 3.1.13.-
    3.1.26.-
    GO:0000175 ... Q9Y2L1 29906447
    454120 6d6r:M (3.45) BS01 rna 3.6.4.13 GO:0000176 ... P42285 29906447
    454121 6d6r:M (3.45) BS02 ANP 3.6.4.13 GO:0000176 ... P42285 29906447
    454122 6d6t:A (3.86) BS01 ABU ? GO:0004888 ... P47870 29950725
    454123 6d6t:A (3.86) BS02 Y01 ? GO:0004888 ... P47870 29950725
    454124 6d6t:A (3.86) BS03 Y01 ? GO:0004888 ... P47870 29950725
    454125 6d6t:B (3.86) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    454126 6d6t:B (3.86) BS02 Y01 ? GO:0004888 ... P14867 29950725
    454127 6d6t:B (3.86) BS03 Y01 ? GO:0004888 ... P14867 29950725
    454128 6d6t:C (3.86) BS01 ABU ? GO:0004888 ... P47870 29950725
    454129 6d6t:D (3.86) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    454130 6d6t:D (3.86) BS02 FYP ? GO:0004888 ... P14867 29950725 BindingDB: Ki=0.80nM
    454131 6d6t:D (3.86) BS03 Y01 ? GO:0004888 ... P14867 29950725
    454132 6d6t:E (3.86) BS01 FYP ? GO:0004888 ... P18507 29950725
    454133 6d6u:A (3.92) BS01 ABU ? GO:0004888 ... P47870 29950725
    454134 6d6u:B (3.92) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    454135 6d6u:C (3.92) BS01 ABU ? GO:0004888 ... P47870 29950725
    454136 6d6u:C (3.92) BS02 Y01 ? GO:0004888 ... P47870 29950725
    454137 6d6u:C (3.92) BS03 Y01 ? GO:0004888 ... P47870 29950725
    454138 6d6u:D (3.92) BS01 ABU ? GO:0004888 ... P14867 29950725 BindingDB: EC50=80000nM, Ki=21.37nM
    454139 6d6u:D (3.92) BS02 Y01 ? GO:0004888 ... P14867 29950725
    454140 6d6u:D (3.92) BS03 FYP ? GO:0004888 ... P14867 29950725 BindingDB: Ki=0.80nM
    454141 6d6u:E (3.92) BS01 MAN ? GO:0004888 ... P18507 29950725
    454142 6d6u:E (3.92) BS02 FYP ? GO:0004888 ... P18507 29950725
    454143 6d6u:E (3.92) BS03 Y01 ? GO:0004888 ... P18507 29950725
    454144 6d6v:A (4.8) BS01 rna 2.7.7.49 GO:0000333 ... O77448 29775593
    454145 6d6v:A (4.8) BS02 dna 2.7.7.49 GO:0000333 ... O77448 29775593
    454146 6d6v:D (4.8) BS01 rna ? GO:0000781 ... D2CVN6 29775593
    454147 6d6v:D (4.8) BS02 dna ? GO:0000781 ... D2CVN6 29775593
    454148 6d6v:D (4.8) BS03 ZN ? GO:0000781 ... D2CVN6 29775593
    454149 6d6v:H (4.8) BS01 rna ? GO:0000781 ... W7X6T2 29775593
    454150 6d6w:A (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454151 6d6w:B (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454152 6d6w:C (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454153 6d6w:D (1.8) BS01 GCU 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454154 6d6y:A (2.246) BS01 SAH 2.1.1.- N/A A0A1U7N2Z8 29701944
    454155 6d71:A (1.71808) BS01 GTP 3.6.5.- GO:0003924 ... Q8IXI2 33132189
    454156 6d71:A (1.71808) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI2 33132189
    454157 6d71:B (1.71808) BS01 GTP 3.6.5.- GO:0003924 ... Q8IXI2 33132189
    454158 6d71:B (1.71808) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI2 33132189
    454159 6d72:A (2.17) BS01 CA 2.3.1.57 GO:0004145 ... A0A5P8YIA2 N/A
    454160 6d72:B (2.17) BS01 CA 2.3.1.57 GO:0004145 ... A0A5P8YIA2 N/A
    454161 6d73:A (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    454162 6d73:B (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    454163 6d73:C (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    454164 6d73:D (3.8) BS01 CA N/A GO:0005216 ... N/A 31431622
    454165 6d78:A (2.347) BS01 peptide ? N/A P04439 30617019
    454166 6d78:E (2.347) BS01 peptide ? GO:0002376 ... K7N5M4 30617019
    454167 6d7f:A (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454168 6d7f:B (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454169 6d7f:C (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454170 6d7f:D (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454171 6d7f:E (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454172 6d7f:F (2.4) BS01 FYJ 3.2.1.31 GO:0004553 ... A0A174CQK8 30301767
    454173 6d7j:A (2.24) BS01 PRO ? GO:0004553 ... K5ZWV5 30230652
    454174 6d7j:D (2.24) BS01 PRO ? GO:0004553 ... K5ZWV5 30230652
    454175 6d7k:A (2.6) BS01 FE ? GO:0004497 ... Q27RN7 31616787
    454176 6d7k:A (2.6) BS02 FE ? GO:0004497 ... Q27RN7 31616787
    454177 6d7k:E (2.6) BS01 FE ? GO:0004497 ... Q27RN7 31616787
    454178 6d7k:E (2.6) BS02 FE ? GO:0004497 ... Q27RN7 31616787
    454179 6d7o:A (3.45) BS01 FZ4 ? GO:0005216 ... Q9R186 29941865
    454180 6d7o:A (3.45) BS02 DTB ? GO:0005216 ... Q9R186 29941865
    454181 6d7p:A (3.37) BS01 DTB ? GO:0005216 ... Q9R186 29941865
    454182 6d7q:A (3.497) BS01 FZ4 ? GO:0005216 ... Q9R186 29941865
    454183 6d7q:A (3.497) BS02 DTB ? GO:0005216 ... Q9R186 29941865
    454184 6d7t:A (4.44) BS01 FZ4 ? GO:0005216 ... Q9H1D0 29941865
    454185 6d7t:B (4.44) BS01 FZ4 ? GO:0005216 ... Q9H1D0 29941865
    454186 6d7t:C (4.44) BS01 FZ4 ? GO:0005216 ... Q9H1D0 29941865
    454187 6d7t:D (4.44) BS01 FZ4 ? GO:0005216 ... Q9H1D0 29941865
    454188 6d7v:A (4.3) BS01 FYY ? GO:0005216 ... Q9R186 29941865
    454189 6d7x:A (3.6) BS01 FYY ? GO:0005216 ... Q9R186 29941865
    454190 6d7x:A (3.6) BS02 DTB ? GO:0005216 ... Q9R186 29941865
    454191 6d83:C (4.27) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454192 6d83:C (4.27) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    454193 6d83:H (4.27) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454194 6d83:H (4.27) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    454195 6d83:M (4.27) BS01 peptide ? GO:0005515 ... P35585 30053425
    454196 6d83:S (4.27) BS01 peptide ? GO:0000139 ... Q96PC3 30053425
    454197 6d84:C (6.72) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454198 6d84:C (6.72) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    454199 6d84:H (6.72) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454200 6d84:H (6.72) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).