SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    454201 6d84:I (6.72) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454202 6d84:I (6.72) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    454203 6d84:M (6.72) BS01 peptide ? GO:0005515 ... P35585 30053425
    454204 6d84:N (6.72) BS01 GTP 3.6.5.2 GO:0000139 ... P84077 30053425
    454205 6d84:N (6.72) BS02 MG 3.6.5.2 GO:0000139 ... P84077 30053425
    454206 6d84:P (6.72) BS01 peptide ? GO:0005515 ... P35585 30053425
    454207 6d84:Q (6.72) BS01 peptide ? GO:0000139 ... Q96PC3 30053425
    454208 6d84:S (6.72) BS01 peptide ? GO:0000139 ... Q96PC3 30053425
    454209 6d88:A (2.853) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454210 6d88:A (2.853) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454211 6d88:A (2.853) BS03 G9K 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454212 6d88:B (2.853) BS01 GDP ? GO:0000226 ... P02554 30122035
    454213 6d88:B (2.853) BS02 G9K ? GO:0000226 ... P02554 30122035
    454214 6d88:C (2.853) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454215 6d88:C (2.853) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454216 6d88:C (2.853) BS03 G9K 3.6.5.- GO:0000226 ... Q2XVP4 30122035
    454217 6d88:D (2.853) BS01 GDP ? GO:0000226 ... P02554 30122035
    454218 6d88:D (2.853) BS02 G9K ? GO:0000226 ... P02554 30122035
    454219 6d88:F (2.853) BS01 ACP N/A GO:0036211 ... N/A 30122035
    454220 6d8a:A (2.251) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454221 6d8a:A (2.251) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454222 6d8a:F (2.251) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454223 6d8a:F (2.251) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454224 6d8c:H (3.54) BS01 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454225 6d8c:H (3.54) BS02 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454226 6d8c:H (3.54) BS03 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    454227 6d8c:H (3.54) BS04 MG 3.6.4.- GO:0001725 ... P68139 30224736
    454228 6d8c:J (3.54) BS01 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454229 6d8c:J (3.54) BS02 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    454230 6d8c:J (3.54) BS03 MG 3.6.4.- GO:0001725 ... P68139 30224736
    454231 6d8c:K (3.54) BS01 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454232 6d8c:K (3.54) BS02 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    454233 6d8c:K (3.54) BS03 MG 3.6.4.- GO:0001725 ... P68139 30224736
    454234 6d8c:L (3.54) BS01 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454235 6d8c:L (3.54) BS02 peptide 3.6.4.- GO:0001725 ... P68139 30224736
    454236 6d8c:L (3.54) BS03 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    454237 6d8c:L (3.54) BS04 MG 3.6.4.- GO:0001725 ... P68139 30224736
    454238 6d8c:M (3.54) BS01 ADP 3.6.4.- GO:0001725 ... P68139 30224736
    454239 6d8c:M (3.54) BS02 MG 3.6.4.- GO:0001725 ... P68139 30224736
    454240 6d8d:A (3.55) BS01 GAL ? GO:0019031 ... A0A2I7YV81 29848588
    454241 6d8d:A (3.55) BS02 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    454242 6d8d:C (3.55) BS01 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    454243 6d8d:E (3.55) BS01 GAL ? GO:0019031 ... A0A2I7YV81 29848588
    454244 6d8d:E (3.55) BS02 SIA ? GO:0019031 ... A0A2I7YV81 29848588
    454245 6d8e:A (2.537) BS01 FZP 2.7.10.1 GO:0004672 ... P00533 29978938
    454246 6d8f:A (2.15) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454247 6d8f:A (2.15) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454248 6d8f:F (2.15) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454249 6d8f:F (2.15) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454250 6d8i:A (1.65) BS01 CA 2.3.1.- GO:0031177 ... I6X8D2 N/A
    454251 6d8p:A (2.1) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454252 6d8p:A (2.1) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454253 6d8p:A (2.1) BS03 MG ? GO:0003676 ... A4WYU7 29996105
    454254 6d8p:B (2.1) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454255 6d8p:B (2.1) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454256 6d8v:A (2.8) BS01 PBE ? N/A Q92SH9 30442721
    454257 6d8x:A (1.9) BS01 EDK ? GO:0003677 ... P37231 N/A BindingDB: Ki=1.4nM, EC50=6.2nM
    454258 6d90:A (3.2) BS01 rna ? GO:0002181 ... G1TT27 29856316
    454259 6d90:B (3.2) BS01 rna ? GO:0003723 ... G1TL06 29856316
    454260 6d90:BB (3.2) BS01 rna ? GO:0000028 ... G1TLT8 29856316
    454261 6d90:C (3.2) BS01 rna ? GO:0003735 ... G1SVW5 29856316
    454262 6d90:C (3.2) BS02 rna ? GO:0003735 ... G1SVW5 29856316
    454263 6d90:CC (3.2) BS01 rna ? GO:0003735 ... G1SS70 29856316
    454264 6d90:D (3.2) BS01 rna ? GO:0000027 ... P19949 29856316
    454265 6d90:D (3.2) BS02 rna ? GO:0000027 ... P19949 29856316
    454266 6d90:DD (3.2) BS01 rna ? GO:0003723 ... G1SWM1 29856316
    454267 6d90:E (3.2) BS01 rna ? GO:0000027 ... G1SKF7 29856316
    454268 6d90:EE (3.2) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 29856316
    454269 6d90:F (3.2) BS01 rna ? GO:0000463 ... G1SV32 29856316
    454270 6d90:F (3.2) BS02 rna ? GO:0000463 ... G1SV32 29856316
    454271 6d90:FF (3.2) BS01 rna ? GO:0003723 ... G1TK17 29856316
    454272 6d90:G (3.2) BS01 rna ? GO:0003723 ... G1STW0 29856316
    454273 6d90:G (3.2) BS02 rna ? GO:0003723 ... G1STW0 29856316
    454274 6d90:GG (3.2) BS01 rna ? GO:0003723 ... G1TFM5 29856316
    454275 6d90:H (3.2) BS01 rna ? GO:0002181 ... G1SWI6 29856316
    454276 6d90:HH (3.2) BS01 rna ? GO:0003735 ... G1TM55 29856316
    454277 6d90:I (3.2) BS01 rna ? GO:0003735 ... B7NZQ2 29856316
    454278 6d90:I (3.2) BS02 rna ? GO:0003735 ... B7NZQ2 29856316
    454279 6d90:II (3.2) BS01 rna ? GO:0003735 ... G1SVB0 29856316
    454280 6d90:J (3.2) BS01 rna ? GO:0003735 ... G1TUB8 29856316
    454281 6d90:J (3.2) BS02 rna ? GO:0003735 ... G1TUB8 29856316
    454282 6d90:J (3.2) BS03 rna ? GO:0003735 ... G1TUB8 29856316
    454283 6d90:JJ (3.2) BS01 rna ? GO:0003735 ... G1TJW1 29856316
    454284 6d90:JJ (3.2) BS02 rna ? GO:0003735 ... G1TJW1 29856316
    454285 6d90:K (3.2) BS01 rna ? GO:0003723 ... G1SKZ8 29856316
    454286 6d90:K (3.2) BS02 rna ? GO:0003723 ... G1SKZ8 29856316
    454287 6d90:KK (3.2) BS01 rna ? GO:0003723 ... B7NZS8 29856316
    454288 6d90:L (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    454289 6d90:L (3.2) BS02 rna N/A GO:0003735 ... N/A 29856316
    454290 6d90:LL (3.2) BS01 rna ? GO:0003723 ... G1U0Y5 29856316
    454291 6d90:M (3.2) BS01 rna ? GO:0003723 ... G1SZ12 29856316
    454292 6d90:MM (3.2) BS01 rna ? GO:0003735 ... G1TRM4 29856316
    454293 6d90:N (3.2) BS01 rna ? GO:0002181 ... G1T0C1 29856316
    454294 6d90:N (3.2) BS02 rna ? GO:0002181 ... G1T0C1 29856316
    454295 6d90:NN (3.2) BS01 rna ? GO:0003735 ... G1SFR8 29856316
    454296 6d90:O (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    454297 6d90:OO (3.2) BS01 rna ? GO:0003735 ... G1SP51 29856316
    454298 6d90:P (3.2) BS01 rna ? GO:0002181 ... G1SCJ6 29856316
    454299 6d90:P (3.2) BS02 rna ? GO:0002181 ... G1SCJ6 29856316
    454300 6d90:PP (3.2) BS01 rna ? GO:0003735 ... G1T1F0 29856316
    454301 6d90:Q (3.2) BS01 rna ? GO:0003723 ... G1TX70 29856316
    454302 6d90:QQ (3.2) BS01 rna ? GO:0000028 ... G1U0Q2 29856316
    454303 6d90:R (3.2) BS01 rna ? GO:0003723 ... G1TJR3 29856316
    454304 6d90:R (3.2) BS02 rna ? GO:0003723 ... G1TJR3 29856316
    454305 6d90:RR (3.2) BS01 rna ? GO:0000462 ... G1SGX4 29856316
    454306 6d90:S (3.2) BS01 rna ? GO:0003735 ... G1TTY7 29856316
    454307 6d90:S (3.2) BS02 rna ? GO:0003735 ... G1TTY7 29856316
    454308 6d90:SS (3.2) BS01 rna ? GO:0003735 ... G1TU13 29856316
    454309 6d90:T (3.2) BS01 rna ? GO:0003735 ... G1SHQ2 29856316
    454310 6d90:T (3.2) BS02 rna ? GO:0003735 ... G1SHQ2 29856316
    454311 6d90:TT (3.2) BS01 rna ? GO:0003676 ... G1TPG3 29856316
    454312 6d90:U (3.2) BS01 rna ? GO:0002181 ... G1TSG1 29856316
    454313 6d90:UU (3.2) BS01 rna ? GO:0000028 ... G1TN62 29856316
    454314 6d90:V (3.2) BS01 rna ? GO:0003735 ... G1T6D1 29856316
    454315 6d90:VV (3.2) BS01 rna ? GO:0003723 ... G1SIZ2 29856316
    454316 6d90:W (3.2) BS01 rna ? GO:0000027 ... G1SE28 29856316
    454317 6d90:W (3.2) BS02 rna ? GO:0000027 ... G1SE28 29856316
    454318 6d90:X (3.2) BS01 rna ? GO:0003735 ... G1SE76 29856316
    454319 6d90:X (3.2) BS02 rna ? GO:0003735 ... G1SE76 29856316
    454320 6d90:XX (3.2) BS01 rna ? GO:0003735 ... G1TG89 29856316
    454321 6d90:Y (3.2) BS01 rna ? GO:0003723 ... G1SQH0 29856316
    454322 6d90:Y (3.2) BS02 rna ? GO:0003723 ... G1SQH0 29856316
    454323 6d90:YY (3.2) BS01 rna ? GO:0003735 ... G1SZ47 29856316
    454324 6d90:Z (3.2) BS01 rna ? GO:0003735 ... G1TXF6 29856316
    454325 6d90:ZZ (3.2) BS01 rna ? GO:0003735 ... G1T3D8 29856316
    454326 6d90:a (3.2) BS01 rna ? GO:0003735 ... G1SNY0 29856316
    454327 6d90:aa (3.2) BS01 rna ? GO:0003735 ... G1TDB3 29856316
    454328 6d90:aa (3.2) BS02 rna ? GO:0003735 ... G1TDB3 29856316
    454329 6d90:b (3.2) BS01 rna ? GO:0002181 ... G1SGR6 29856316
    454330 6d90:bb (3.2) BS01 rna ? GO:0003729 ... G1TFE8 29856316
    454331 6d90:c (3.2) BS01 rna ? GO:0002181 ... G1TDL2 29856316
    454332 6d90:cc (3.2) BS01 rna ? GO:0003735 ... G1TZ76 29856316
    454333 6d90:d (3.2) BS01 rna ? GO:0002181 ... G1SHG0 29856316
    454334 6d90:dd (3.2) BS01 rna ? GO:0000028 ... G1TIB4 29856316
    454335 6d90:e (3.2) BS01 rna ? GO:0003735 ... G1TUN8 29856316
    454336 6d90:ee (3.2) BS01 rna ? GO:0002181 ... G1U7M4 29856316
    454337 6d90:f (3.2) BS01 rna ? GO:0000049 ... G1SF08 29856316
    454338 6d90:ff (3.2) BS01 rna ? GO:0003735 ... G1T8A2 29856316
    454339 6d90:g (3.2) BS01 rna ? GO:0003735 ... A0AAA9WXS4 29856316
    454340 6d90:gg (3.2) BS01 rna ? GO:0003735 ... G1SK22 29856316
    454341 6d90:h (3.2) BS01 rna ? GO:0000463 ... G1SIT5 29856316
    454342 6d90:h (3.2) BS02 rna ? GO:0000463 ... G1SIT5 29856316
    454343 6d90:hh (3.2) BS01 rna ? GO:0001891 ... G1SJB4 29856316
    454344 6d90:i (3.2) BS01 rna ? GO:0003735 ... G1TTQ5 29856316
    454345 6d90:j (3.2) BS01 rna ? GO:0003723 ... U3KPD5 29856316
    454346 6d90:j (3.2) BS02 rna ? GO:0003723 ... U3KPD5 29856316
    454347 6d90:jj (3.2) BS01 rna ? GO:0000184 ... P62495 29856316
    454348 6d90:jj (3.2) BS02 rna ? GO:0000184 ... P62495 29856316
    454349 6d90:jj (3.2) BS03 rna ? GO:0000184 ... P62495 29856316
    454350 6d90:jj (3.2) BS04 rna ? GO:0000184 ... P62495 29856316
    454351 6d90:k (3.2) BS01 rna ? GO:0003735 ... G1U001 29856316
    454352 6d90:l (3.2) BS01 rna ? GO:0003735 ... G1TTN1 29856316
    454353 6d90:l (3.2) BS02 rna ? GO:0003735 ... G1TTN1 29856316
    454354 6d90:m (3.2) BS01 rna N/A GO:0003735 ... N/A 29856316
    454355 6d90:o (3.2) BS01 rna ? GO:0003735 ... G1T040 29856316
    454356 6d90:p (3.2) BS01 rna ? GO:0003735 ... G1SY53 29856316
    454357 6d90:r (3.2) BS01 rna ? GO:0003735 ... G1U7L1 29856316
    454358 6d90:s (3.2) BS01 rna N/A GO:0042254 ... A0A1U7UFL5 29856316
    454359 6d90:t (3.2) BS01 rna ? GO:0003723 ... G1SMR7 29856316
    454360 6d92:A (1.81) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454361 6d92:A (1.81) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454362 6d92:F (1.81) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454363 6d92:F (1.81) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454364 6d94:A (1.9) BS01 peptide ? GO:0003677 ... P37231 36469765
    454365 6d94:A (1.9) BS02 EDK ? GO:0003677 ... P37231 36469765 BindingDB: Ki=1.4nM, EC50=6.2nM
    454366 6d95:A (1.85) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454367 6d95:A (1.85) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454368 6d95:F (1.85) BS01 rna ? GO:0003676 ... A4WYU7 29996105
    454369 6d95:F (1.85) BS02 dna ? GO:0003676 ... A4WYU7 29996105
    454370 6d96:A (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454371 6d96:A (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454372 6d96:B (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454373 6d96:B (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454374 6d96:C (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454375 6d96:C (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454376 6d96:D (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454377 6d96:D (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454378 6d96:E (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454379 6d96:E (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454380 6d96:F (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454381 6d96:F (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454382 6d96:G (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454383 6d96:G (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454384 6d96:H (2.15) BS01 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454385 6d96:H (2.15) BS02 CA 3.2.1.18 GO:0004308 ... Q9IGQ6 N/A
    454386 6d97:A (2.2) BS01 NAD 1.2.1.88 GO:0000166 ... A0A2H4PMI3 30580036
    454387 6d97:B (2.2) BS01 NAD 1.2.1.88 GO:0000166 ... A0A2H4PMI3 30580036
    454388 6d97:C (2.2) BS01 NAD 1.2.1.88 GO:0000166 ... A0A2H4PMI3 30580036
    454389 6d97:D (2.2) BS01 NAD 1.2.1.88 GO:0000166 ... A0A2H4PMI3 30580036
    454390 6d99:A (2.15) BS01 FAD N/A GO:0008767 ... N/A N/A
    454391 6d99:A (2.15) BS02 UD2 N/A GO:0008767 ... N/A N/A
    454392 6d9a:A (2.9) BS01 FDA N/A GO:0008767 ... N/A N/A
    454393 6d9a:A (2.9) BS02 UD2 N/A GO:0008767 ... N/A N/A
    454394 6d9b:A (2.2) BS01 FAD N/A GO:0008767 ... N/A N/A
    454395 6d9b:A (2.2) BS02 UPG N/A GO:0008767 ... N/A N/A
    454396 6d9c:A (3.05) BS01 FDA N/A GO:0008767 ... N/A N/A
    454397 6d9c:A (3.05) BS02 UPG N/A GO:0008767 ... N/A N/A
    454398 6d9d:A (2.2) BS01 FAD N/A GO:0008767 ... N/A N/A
    454399 6d9d:A (2.2) BS02 UD1 N/A GO:0008767 ... N/A N/A
    454400 6d9e:A (2.85) BS01 FDA N/A GO:0008767 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).