SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    456601 6dm8:A (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456602 6dm8:A (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456603 6dm8:A (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456604 6dm8:A (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456605 6dm8:A (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456606 6dm8:B (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456607 6dm8:B (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456608 6dm8:B (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456609 6dm8:B (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456610 6dm8:C (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456611 6dm8:C (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456612 6dm8:C (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456613 6dm8:C (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456614 6dm8:C (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456615 6dm8:C (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456616 6dm8:C (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456617 6dm8:D (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456618 6dm8:D (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456619 6dm8:D (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456620 6dm8:D (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456621 6dm8:D (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456622 6dm8:D (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456623 6dm8:E (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456624 6dm8:E (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456625 6dm8:E (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456626 6dm8:E (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456627 6dm8:F (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456628 6dm8:F (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456629 6dm8:F (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456630 6dm8:F (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456631 6dm8:F (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456632 6dm8:F (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456633 6dm8:G (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456634 6dm8:G (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456635 6dm8:G (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456636 6dm8:G (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456637 6dm8:G (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456638 6dm8:G (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456639 6dm8:G (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456640 6dm8:H (2.7) BS01 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456641 6dm8:H (2.7) BS02 GLC ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456642 6dm8:H (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456643 6dm8:H (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456644 6dm8:H (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456645 6dm8:H (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456646 6dm8:H (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287
    30011190
    456647 6dmb:A (3.9) BS01 Y01 ? GO:0000122 ... Q13635 29954986
    456648 6dmb:A (3.9) BS02 Y01 ? GO:0000122 ... Q13635 29954986
    456649 6dmf:A (2.4) BS01 BGC N/A N/A N/A 31062073
    456650 6dmf:A (2.4) BS02 BGC N/A N/A N/A 31062073
    456651 6dmf:A (2.4) BS03 BGC N/A N/A N/A 31062073
    456652 6dmf:A (2.4) BS04 BGC N/A N/A N/A 31062073
    456653 6dmf:A (2.4) BS05 MG N/A N/A N/A 31062073
    456654 6dmf:B (2.4) BS01 BGC N/A N/A N/A 31062073
    456655 6dmf:B (2.4) BS02 MG N/A N/A N/A 31062073
    456656 6dmf:C (2.4) BS01 BGC N/A N/A N/A 31062073
    456657 6dmf:C (2.4) BS02 BGC N/A N/A N/A 31062073
    456658 6dmf:C (2.4) BS03 BGC N/A N/A N/A 31062073
    456659 6dmf:C (2.4) BS04 MG N/A N/A N/A 31062073
    456660 6dmf:D (2.4) BS01 BGC N/A N/A N/A 31062073
    456661 6dmf:D (2.4) BS02 BGC N/A N/A N/A 31062073
    456662 6dmf:D (2.4) BS03 BGC N/A N/A N/A 31062073
    456663 6dmf:D (2.4) BS04 BGC N/A N/A N/A 31062073
    456664 6dmf:D (2.4) BS05 MG N/A N/A N/A 31062073
    456665 6dmf:E (2.4) BS01 BGC N/A N/A N/A 31062073
    456666 6dmf:E (2.4) BS02 BGC N/A N/A N/A 31062073
    456667 6dmf:E (2.4) BS03 BGC N/A N/A N/A 31062073
    456668 6dmf:E (2.4) BS04 MG N/A N/A N/A 31062073
    456669 6dmf:F (2.4) BS01 BGC N/A N/A N/A 31062073
    456670 6dmf:F (2.4) BS02 BGC N/A N/A N/A 31062073
    456671 6dmf:F (2.4) BS03 BGC N/A N/A N/A 31062073
    456672 6dmf:F (2.4) BS04 MG N/A N/A N/A 31062073
    456673 6dmf:G (2.4) BS01 BGC N/A N/A N/A 31062073
    456674 6dmf:G (2.4) BS02 BGC N/A N/A N/A 31062073
    456675 6dmf:G (2.4) BS03 BGC N/A N/A N/A 31062073
    456676 6dmf:G (2.4) BS04 MG N/A N/A N/A 31062073
    456677 6dmf:H (2.4) BS01 BGC N/A N/A N/A 31062073
    456678 6dmf:H (2.4) BS02 BGC N/A N/A N/A 31062073
    456679 6dmf:H (2.4) BS03 MG N/A N/A N/A 31062073
    456680 6dmf:I (2.4) BS01 BGC N/A N/A N/A 31062073
    456681 6dmf:I (2.4) BS02 BGC N/A N/A N/A 31062073
    456682 6dmf:I (2.4) BS03 MG N/A N/A N/A 31062073
    456683 6dmf:J (2.4) BS01 BGC N/A N/A N/A 31062073
    456684 6dmf:J (2.4) BS02 BGC N/A N/A N/A 31062073
    456685 6dmf:J (2.4) BS03 MG N/A N/A N/A 31062073
    456686 6dmg:A (2.2) BS01 EK6 2.7.11.24 GO:0000165 ... P28482 30457858
    456687 6dmh:A (1.3) BS01 MER 3.5.2.6 GO:0008800 ... Q6JP75 30457858
    456688 6dmi:A (1.9) BS01 5T5 3.4.23.46 GO:0004190 ... P56817 30457858
    456689 6dmj:A (1.15) BS01 53W ? N/A O60885 30457858 BindingDB: IC50=2.4e+3nM, Kd=7.8e+2nM
    456690 6dmk:A (1.66) BS01 2LL 2.3.1.-
    2.3.1.48
    N/A Q92793 30457858 BindingDB: IC50=240nM
    456691 6dml:A (1.5) BS01 9BM ? N/A O60885 30457858
    456692 6dmn:A (1.27) BS01 rna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456693 6dmn:A (1.27) BS02 rna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456694 6dmn:A (1.27) BS03 dna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456695 6dmn:A (1.27) BS04 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456696 6dmn:A (1.27) BS05 CA 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456697 6dms:A (2.85) BS01 CA ? GO:0005509 ... Q08I46 30282808
    456698 6dms:A (2.85) BS02 CA ? GO:0005509 ... Q08I46 30282808
    456699 6dmu:A (4.0) BS01 PIO ? GO:0005216 ... Q9XSM3 30305626
    456700 6dmu:B (4.0) BS01 PIO ? GO:0005216 ... Q9XSM3 30305626
    456701 6dmu:C (4.0) BS01 PIO ? GO:0005216 ... Q9XSM3 30305626
    456702 6dmu:D (4.0) BS01 PIO ? GO:0005216 ... Q9XSM3 30305626
    456703 6dmv:A (1.52) BS01 rna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456704 6dmv:A (1.52) BS02 rna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456705 6dmv:A (1.52) BS03 dna 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456706 6dmv:A (1.52) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456707 6dmv:A (1.52) BS05 MG 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    456708 6dmw:E (4.4) BS01 CA ? GO:0000086 ... P0DP29 30305626
    456709 6dmw:E (4.4) BS02 CA ? GO:0000086 ... P0DP29 30305626
    456710 6dmw:E (4.4) BS03 CA ? GO:0000086 ... P0DP29 30305626
    456711 6dmx:B (2.8) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 30232260
    456712 6dmx:D (2.8) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 30232260
    456713 6dmx:E (2.8) BS01 peptide ? GO:0016032 ... P0C746 30232260
    456714 6dmx:G (2.8) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 30232260
    456715 6dmx:I (2.8) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 30232260
    456716 6dmy:A (3.6) BS01 Y01 ? GO:0000122 ... Q13635 29954986
    456717 6dmy:A (3.6) BS02 Y01 ? GO:0000122 ... Q13635 29954986
    456718 6dmy:B (3.6) BS01 SER 3.1.-.- GO:0007267 ... Q15465 29954986
    456719 6dmy:B (3.6) BS02 ZN 3.1.-.- GO:0007267 ... Q15465 29954986
    456720 6dmy:B (3.6) BS03 CA 3.1.-.- GO:0007267 ... Q15465 29954986
    456721 6dmy:B (3.6) BS04 CA 3.1.-.- GO:0007267 ... Q15465 29954986
    456722 6dn5:A (2.4) BS01 peptide ? N/A Q99619 30226743
    456723 6dn6:A (1.59) BS01 peptide ? N/A Q99619 30226743
    456724 6dn7:A (1.4) BS01 peptide ? N/A Q96A44 30226743
    456725 6dn7:C (1.4) BS01 peptide ? N/A Q96A44 30226743
    456726 6dn8:A (1.75) BS01 peptide ? N/A Q96A44 30226743
    456727 6dn8:C (1.75) BS01 peptide ? N/A Q96A44 30226743
    456728 6dn8:E (1.75) BS01 peptide ? N/A Q96A44 30226743
    456729 6dna:A (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456730 6dna:B (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456731 6dna:C (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456732 6dna:D (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456733 6dna:E (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456734 6dna:F (3.0) BS01 PLP 2.6.1.1
    2.6.1.3
    GO:0003824 ... P17174 30365304
    456735 6dnb:A (1.7) BS01 PO4 2.6.1.1
    2.6.1.3
    GO:0004069 ... P17174 30365304
    456736 6dnc:AA (3.7) BS01 rna ? GO:0000027 ... P0A7L8 29941456
    456737 6dnc:AA (3.7) BS02 rna ? GO:0000027 ... P0A7L8 29941456
    456738 6dnc:AB (3.7) BS01 rna ? GO:0003735 ... P0AG59 29941456
    456739 6dnc:BA (3.7) BS01 rna ? GO:0000027 ... P0A7M2 29941456
    456740 6dnc:BB (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 29941456
    456741 6dnc:CA (3.7) BS01 rna ? GO:0000027 ... P0A7M6 29941456
    456742 6dnc:CB (3.7) BS01 rna ? GO:0000028 ... P0A7T3 29941456
    456743 6dnc:DA (3.7) BS01 rna ? GO:0000027 ... P0AG51 29941456
    456744 6dnc:DA (3.7) BS02 rna ? GO:0000027 ... P0AG51 29941456
    456745 6dnc:DB (3.7) BS01 rna ? GO:0000028 ... P0AG63 29941456
    456746 6dnc:E (3.7) BS01 rna ? GO:0000027 ... P0A7L0 29941456
    456747 6dnc:E (3.7) BS02 rna ? GO:0000027 ... P0A7L0 29941456
    456748 6dnc:EA (3.7) BS01 rna ? GO:0002181 ... P0A7M9 29941456
    456749 6dnc:EB (3.7) BS01 rna ? GO:0002181 ... P0A7T7 29941456
    456750 6dnc:F (3.7) BS01 rna ? GO:0000027 ... P60422 29941456
    456751 6dnc:FA (3.7) BS01 rna ? GO:0000027 ... P0A7N4 29941456
    456752 6dnc:FB (3.7) BS01 rna ? GO:0000028 ... P0A7U3 29941456
    456753 6dnc:G (3.7) BS01 rna ? GO:0000027 ... P60438 29941456
    456754 6dnc:GA (3.7) BS01 rna ? GO:0000027 ... P0A7N9 29941456
    456755 6dnc:GB (3.7) BS01 rna ? GO:0000028 ... P0A7U7 29941456
    456756 6dnc:H (3.7) BS01 rna ? GO:0001070 ... P60723 29941456
    456757 6dnc:HA (3.7) BS01 rna ? GO:0002181 ... P0A7P5 29941456
    456758 6dnc:HB (3.7) BS01 rna ? GO:0000028 ... P68679 29941456
    456759 6dnc:I (3.7) BS01 rna ? GO:0000027 ... P62399 29941456
    456760 6dnc:I (3.7) BS02 rna ? GO:0000027 ... P62399 29941456
    456761 6dnc:I (3.7) BS03 rna ? GO:0000027 ... P62399 29941456
    456762 6dnc:IA (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 29941456
    456763 6dnc:J (3.7) BS01 rna ? GO:0000027 ... P0AG55 29941456
    456764 6dnc:JA (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 29941456
    456765 6dnc:K (3.7) BS01 rna ? GO:0002181 ... P0A7R1 29941456
    456766 6dnc:L (3.7) BS01 rna ? GO:0002181 ... P0A7J3 29941456
    456767 6dnc:M (3.7) BS01 rna ? GO:0000027 ... P0A7J7 29941456
    456768 6dnc:MA (3.7) BS01 rna ? GO:0003747 ... P0A7I0 29941456
    456769 6dnc:MA (3.7) BS02 rna ? GO:0003747 ... P0A7I0 29941456
    456770 6dnc:MA (3.7) BS03 rna ? GO:0003747 ... P0A7I0 29941456
    456771 6dnc:MA (3.7) BS04 rna ? GO:0003747 ... P0A7I0 29941456
    456772 6dnc:N (3.7) BS01 rna ? GO:0002181 ... P0AA10 29941456
    456773 6dnc:O (3.7) BS01 rna ? GO:0002181 ... P0ADY3 29941456
    456774 6dnc:OA (3.7) BS01 rna ? GO:0000028 ... P0A7V0 29941456
    456775 6dnc:P (3.7) BS01 rna ? GO:0002181 ... P02413 29941456
    456776 6dnc:PA (3.7) BS01 rna ? GO:0000028 ... P0A7V3 29941456
    456777 6dnc:Q (3.7) BS01 rna ? GO:0000027 ... P0ADY7 29941456
    456778 6dnc:Q (3.7) BS02 rna ? GO:0000027 ... P0ADY7 29941456
    456779 6dnc:QA (3.7) BS01 rna ? GO:0000028 ... P0A7V8 29941456
    456780 6dnc:R (3.7) BS01 rna ? GO:0000027 ... P0AG44 29941456
    456781 6dnc:RA (3.7) BS01 rna ? GO:0000028 ... P0A7W1 29941456
    456782 6dnc:S (3.7) BS01 rna ? GO:0002181 ... P0C018 29941456
    456783 6dnc:S (3.7) BS02 rna ? GO:0002181 ... P0C018 29941456
    456784 6dnc:SA (3.7) BS01 rna ? GO:0002181 ... P02358 29941456
    456785 6dnc:T (3.7) BS01 rna ? GO:0000027 ... P0A7K6 29941456
    456786 6dnc:T (3.7) BS02 rna ? GO:0000027 ... P0A7K6 29941456
    456787 6dnc:TA (3.7) BS01 rna ? GO:0003723 ... P02359 29941456
    456788 6dnc:TA (3.7) BS02 rna ? GO:0003723 ... P02359 29941456
    456789 6dnc:U (3.7) BS01 rna ? GO:0000027 ... P0A7L3 29941456
    456790 6dnc:UA (3.7) BS01 rna ? GO:0000028 ... P0A7W7 29941456
    456791 6dnc:V (3.7) BS01 rna ? GO:0002181 ... P0AG48 29941456
    456792 6dnc:VA (3.7) BS01 rna ? GO:0000049 ... P0A7X3 29941456
    456793 6dnc:W (3.7) BS01 rna ? GO:0002181 ... P61175 29941456
    456794 6dnc:WA (3.7) BS01 rna ? GO:0000049 ... P0A7R5 29941456
    456795 6dnc:X (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 29941456
    456796 6dnc:XA (3.7) BS01 rna ? GO:0002181 ... P0A7R9 29941456
    456797 6dnc:Y (3.7) BS01 rna ? GO:0000027 ... P60624 29941456
    456798 6dnc:YA (3.7) BS01 rna ? GO:0000049 ... P0A7S3 29941456
    456799 6dnc:Z (3.7) BS01 rna ? GO:0000027 ... P68919 29941456
    456800 6dnc:Z (3.7) BS02 rna ? GO:0000027 ... P68919 29941456

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).