SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2282 2283 2284 2285 2286 2287 2288 2289 2290 2291 2292 2293 2294 2295 2296 2297 2298 2299 2300 2301 2302 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    458201 6dyz:A (1.62) BS02 OS2 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=0.63nM
    BindingDB: Kd=0.630000nM
    458202 6dz0:A (1.62) BS01 PO4 2.4.2.28 GO:0003824 ... Q13126 30860833
    458203 6dz0:A (1.62) BS02 OS3 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=0.94nM
    BindingDB: Kd=0.940000nM
    458204 6dz1:B (2.26) BS01 K N/A GO:0005267 ... N/A 30382100
    458205 6dz2:A (1.99) BS01 OS5 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.4nM
    BindingDB: Kd=1.4nM
    458206 6dz2:B (1.99) BS01 OS5 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.4nM
    BindingDB: Kd=1.4nM
    458207 6dz2:C (1.99) BS01 OS5 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.4nM
    BindingDB: Kd=1.4nM
    458208 6dz3:A (1.91) BS01 OS6 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.3nM
    BindingDB: Kd=1.3nM
    458209 6dz3:B (1.91) BS01 OS6 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.3nM
    BindingDB: Kd=1.3nM
    458210 6dz3:C (1.91) BS01 OS6 2.4.2.28 GO:0003824 ... Q13126 30860833 MOAD: Kd=1.3nM
    BindingDB: Kd=1.3nM
    458211 6dz4:B (1.45) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    458212 6dz5:A (2.26) BS01 P61 4.1.99.2 GO:0006520 ... P31013 30260636
    458213 6dz5:B (2.26) BS01 P61 4.1.99.2 GO:0006520 ... P31013 30260636
    458214 6dz8:A (1.86) BS01 ZN ? GO:0004180 ... A0A0H2WY27 30713527
    458215 6dz8:B (1.86) BS01 ZN ? GO:0004180 ... A0A0H2WY27 30713527
    458216 6dz8:B (1.86) BS02 ZN ? GO:0004180 ... A0A0H2WY27 30713527
    458217 6dzd:A (2.66) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A5A677 N/A
    458218 6dzd:B (2.66) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4
    GO:0004000 ... A5A677 N/A
    458219 6dzf:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    458220 6dzg:A (1.87) BS01 ADP 2.7.4.- GO:0006754 ... Q92SA6 N/A
    458221 6dzg:B (1.87) BS01 ADP 2.7.4.- GO:0006754 ... Q92SA6 N/A
    458222 6dzg:C (1.87) BS01 ADP 2.7.4.- GO:0006754 ... Q92SA6 N/A
    458223 6dzg:D (1.87) BS01 AMP 2.7.4.- GO:0006754 ... Q92SA6 N/A
    458224 6dzh:A (1.95) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 31390567
    458225 6dzh:B (1.95) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 31390567
    458226 6dzh:B (1.95) BS02 MG 3.6.5.2 GO:0003924 ... P01112 31390567
    458227 6dzh:B (1.95) BS03 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    458228 6dzh:C (1.95) BS01 GDP 3.6.5.2 GO:0003924 ... P01112 31390567
    458229 6dzh:C (1.95) BS02 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    458230 6dzi:4 (3.46) BS01 rna ? GO:0003735 ... A0QSP9 30038002
    458231 6dzi:5 (3.46) BS01 rna ? GO:0003735 ... A0QSE0 30038002
    458232 6dzi:6 (3.46) BS01 rna ? GO:0003723 ... A0QSD5 30038002
    458233 6dzi:7 (3.46) BS01 rna ? GO:0003723 ... A0R102 30038002
    458234 6dzi:8 (3.46) BS01 rna ? GO:0003735 ... A0QVB8 30038002
    458235 6dzi:9 (3.46) BS01 rna ? GO:0003735 ... A0R550 30038002
    458236 6dzi:C (3.46) BS01 rna ? GO:0002181 ... A0QSD4 30038002
    458237 6dzi:C (3.46) BS02 rna ? GO:0002181 ... A0QSD4 30038002
    458238 6dzi:D (3.46) BS01 rna ? GO:0003735 ... A0QSD1 30038002
    458239 6dzi:E (3.46) BS01 rna ? GO:0003735 ... A0QSD2 30038002
    458240 6dzi:F (3.46) BS01 rna ? GO:0000049 ... A0QSG1 30038002
    458241 6dzi:F (3.46) BS02 rna ? GO:0000049 ... A0QSG1 30038002
    458242 6dzi:G (3.46) BS01 rna ? GO:0002181 ... A0QSG4 30038002
    458243 6dzi:H (3.46) BS01 rna ? GO:0003735 ... A0R7F6 30038002
    458244 6dzi:I (3.46) BS01 rna ? GO:0003735 ... A0QS62 30038002
    458245 6dzi:J (3.46) BS01 rna ? GO:0003735 ... A0QS45 30038002
    458246 6dzi:K (3.46) BS01 rna ? GO:0003729 ... A0QSP8 30038002
    458247 6dzi:L (3.46) BS01 rna ? GO:0003735 ... A0QSF9 30038002
    458248 6dzi:L (3.46) BS02 rna ? GO:0003735 ... A0QSF9 30038002
    458249 6dzi:M (3.46) BS01 rna ? GO:0003735 ... I7G436 30038002
    458250 6dzi:N (3.46) BS01 rna ? GO:0000049 ... A0QSD8 30038002
    458251 6dzi:O (3.46) BS01 rna ? GO:0003735 ... A0QSL9 30038002
    458252 6dzi:P (3.46) BS01 rna ? GO:0003735 ... I7FGD9 30038002
    458253 6dzi:P (3.46) BS02 rna ? GO:0003735 ... I7FGD9 30038002
    458254 6dzi:Q (3.46) BS01 rna ? GO:0003735 ... A0QV42 30038002
    458255 6dzi:Q (3.46) BS02 rna ? GO:0003735 ... A0QV42 30038002
    458256 6dzi:R (3.46) BS01 rna ? GO:0000027 ... A0QYU6 30038002
    458257 6dzi:S (3.46) BS01 rna ? GO:0003723 ... A0R151 30038002
    458258 6dzi:T (3.46) BS01 rna ? GO:0003735 ... A0QSD6 30038002
    458259 6dzi:U (3.46) BS01 rna ? GO:0003735 ... A0QSD3 30038002
    458260 6dzi:V (3.46) BS01 rna ? GO:0003723 ... A0QSG0 30038002
    458261 6dzi:W (3.46) BS01 rna ? GO:0003735 ... A0R3D2 30038002
    458262 6dzi:W (3.46) BS02 rna ? GO:0003735 ... A0R3D2 30038002
    458263 6dzi:X (3.46) BS01 rna ? GO:0003735 ... A0R150 30038002
    458264 6dzi:X (3.46) BS02 rna ? GO:0003735 ... A0R150 30038002
    458265 6dzi:Y (3.46) BS01 rna ? GO:0044238 ... A0QTK6 30038002
    458266 6dzi:Z (3.46) BS01 rna ? GO:0003735 ... A0QSD9 30038002
    458267 6dzi:a (3.46) BS01 rna ? GO:0003735 ... A0QSG7 30038002
    458268 6dzi:b (3.46) BS01 rna ? GO:0003735 ... A0R3I9 30038002
    458269 6dzi:c (3.46) BS01 rna ? GO:0003735 ... A0R551 30038002
    458270 6dzi:d (3.46) BS01 rna ? GO:0003735 ... A0R7K0 30038002
    458271 6dzi:e (3.46) BS01 rna ? GO:0003735 ... A0QYU7 30038002
    458272 6dzi:f (3.46) BS01 rna ? GO:0003735 ... A0QSL4 30038002
    458273 6dzi:g (3.46) BS01 rna ? GO:0003735 ... A0R554 30038002
    458274 6dzi:j (3.46) BS01 rna N/A N/A N/A 30038002
    458275 6dzi:j (3.46) BS02 rna N/A N/A N/A 30038002
    458276 6dzi:k (3.46) BS01 rna ? GO:0003676 ... A0QSD7 30038002
    458277 6dzi:l (3.46) BS01 rna ? GO:0003723 ... A0QSL7 30038002
    458278 6dzi:m (3.46) BS01 rna ? GO:0003723 ... A0QSG6 30038002
    458279 6dzi:n (3.46) BS01 rna N/A GO:0003735 ... N/A 30038002
    458280 6dzi:p (3.46) BS01 rna ? GO:0000049 ... A0QS97 30038002
    458281 6dzi:q (3.46) BS01 rna ? GO:0003735 ... A0QSG3 30038002
    458282 6dzi:r (3.46) BS01 rna ? GO:0003735 ... A0R549 30038002
    458283 6dzi:s (3.46) BS01 rna ? GO:0000049 ... A0QSD0 30038002
    458284 6dzi:t (3.46) BS01 rna ? GO:0003735 ... A0QSL6 30038002
    458285 6dzi:u (3.46) BS01 rna ? GO:0000049 ... A0QS96 30038002
    458286 6dzi:v (3.46) BS01 rna ? GO:0000049 ... A0QSL5 30038002
    458287 6dzi:x (3.46) BS01 rna ? GO:0003735 ... A0QVQ3 30038002
    458288 6dzi:x (3.46) BS02 rna ? GO:0003735 ... A0QVQ3 30038002
    458289 6dzi:y (3.46) BS01 rna N/A GO:0003735 ... N/A 30038002
    458290 6dzi:z (3.46) BS01 rna ? GO:0003735 ... A0QV37 30038002
    458291 6dzk:B (3.6) BS01 rna ? N/A A0QR10 30038002
    458292 6dzk:C (3.6) BS01 rna ? GO:0003676 ... A0QSD7 30038002
    458293 6dzk:D (3.6) BS01 rna ? GO:0003723 ... A0QSL7 30038002
    458294 6dzk:E (3.6) BS01 rna ? GO:0003723 ... A0QSG6 30038002
    458295 6dzk:F (3.6) BS01 rna N/A GO:0003735 ... N/A 30038002
    458296 6dzk:G (3.6) BS01 rna ? GO:0000049 ... A0QS97 30038002
    458297 6dzk:H (3.6) BS01 rna ? GO:0003735 ... A0QSG3 30038002
    458298 6dzk:I (3.6) BS01 rna ? GO:0003723 ... A0QSP9 30038002
    458299 6dzk:J (3.6) BS01 rna ? GO:0000049 ... A0QSD0 30038002
    458300 6dzk:K (3.6) BS01 rna ? GO:0003735 ... A0QSL6 30038002
    458301 6dzk:L (3.6) BS01 rna ? GO:0000049 ... A0QS96 30038002
    458302 6dzk:M (3.6) BS01 rna ? GO:0000049 ... A0QSL5 30038002
    458303 6dzk:N (3.6) BS01 rna ? GO:0003735 ... A0R550 30038002
    458304 6dzk:O (3.6) BS01 rna ? GO:0003735 ... A0QVQ3 30038002
    458305 6dzk:P (3.6) BS01 rna ? GO:0003735 ... A0QV37 30038002
    458306 6dzk:Q (3.6) BS01 rna ? GO:0003735 ... A0QSE0 30038002
    458307 6dzk:S (3.6) BS01 rna ? GO:0000028 ... A0QSD5 30038002
    458308 6dzk:S (3.6) BS02 peptide ? GO:0000028 ... A0QSD5 30038002
    458309 6dzk:T (3.6) BS01 rna ? GO:0003723 ... A0R102 30038002
    458310 6dzk:V (3.6) BS01 rna ? GO:0003735 ... A0QVB8 30038002
    458311 6dzk:Y (3.6) BS01 rna ? GO:0005737 ... A0QTK6 30038002
    458312 6dzk:r (3.6) BS01 rna ? GO:0003735 ... A0R549 30038002
    458313 6dzl:J (4.14) BS01 MAN N/A N/A N/A 30184505
    458314 6dzl:K (4.14) BS01 MAN N/A N/A N/A 30184505
    458315 6dzl:L (4.14) BS01 MAN N/A N/A N/A 30184505
    458316 6dzo:A (1.64) BS01 F9F 4.2.1.20 GO:0000162 ... P00929 N/A
    458317 6dzo:B (1.64) BS01 KOU 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    458318 6dzp:C (3.42) BS01 rna ? GO:0002181 ... A0QSD4 30038002
    458319 6dzp:D (3.42) BS01 rna ? GO:0003735 ... A0QSD1 30038002
    458320 6dzp:E (3.42) BS01 rna ? GO:0003735 ... A0QSD2 30038002
    458321 6dzp:F (3.42) BS01 rna ? GO:0000049 ... A0QSG1 30038002
    458322 6dzp:F (3.42) BS02 rna ? GO:0000049 ... A0QSG1 30038002
    458323 6dzp:G (3.42) BS01 rna ? GO:0002181 ... A0QSG4 30038002
    458324 6dzp:H (3.42) BS01 rna ? GO:0003735 ... A0R7F6 30038002
    458325 6dzp:I (3.42) BS01 rna ? GO:0003735 ... A0QS62 30038002
    458326 6dzp:J (3.42) BS01 rna ? GO:0003735 ... A0QS45 30038002
    458327 6dzp:K (3.42) BS01 rna ? GO:0003729 ... A0QSP8 30038002
    458328 6dzp:L (3.42) BS01 rna ? GO:0003735 ... A0QSF9 30038002
    458329 6dzp:M (3.42) BS01 rna ? GO:0003735 ... A0QSG8 30038002
    458330 6dzp:N (3.42) BS01 rna ? GO:0000049 ... A0QSD8 30038002
    458331 6dzp:O (3.42) BS01 rna ? GO:0003735 ... A0QSL9 30038002
    458332 6dzp:P (3.42) BS01 rna ? GO:0003735 ... I7FGD9 30038002
    458333 6dzp:P (3.42) BS02 rna ? GO:0003735 ... I7FGD9 30038002
    458334 6dzp:Q (3.42) BS01 rna ? GO:0003735 ... A0QV42 30038002
    458335 6dzp:R (3.42) BS01 rna ? GO:0000027 ... A0QYU6 30038002
    458336 6dzp:S (3.42) BS01 rna ? GO:0003723 ... A0R151 30038002
    458337 6dzp:T (3.42) BS01 rna ? GO:0003735 ... A0QSD6 30038002
    458338 6dzp:U (3.42) BS01 rna ? GO:0003735 ... A0QSD3 30038002
    458339 6dzp:V (3.42) BS01 rna ? GO:0003723 ... A0QSG0 30038002
    458340 6dzp:W (3.42) BS01 rna ? GO:0003723 ... A0R3D2 30038002
    458341 6dzp:W (3.42) BS02 rna ? GO:0003723 ... A0R3D2 30038002
    458342 6dzp:X (3.42) BS01 rna ? GO:0003735 ... A0R150 30038002
    458343 6dzp:X (3.42) BS02 rna ? GO:0003735 ... A0R150 30038002
    458344 6dzp:Z (3.42) BS01 rna ? GO:0003735 ... A0QSD9 30038002
    458345 6dzp:a (3.42) BS01 rna ? GO:0003735 ... A0QSG7 30038002
    458346 6dzp:b (3.42) BS01 rna ? GO:0003735 ... A0R3I9 30038002
    458347 6dzp:c (3.42) BS01 rna ? GO:0003735 ... A0R551 30038002
    458348 6dzp:d (3.42) BS01 rna ? GO:0003735 ... A0R7K0 30038002
    458349 6dzp:e (3.42) BS01 rna ? GO:0003735 ... A0QYU7 30038002
    458350 6dzp:f (3.42) BS01 rna ? GO:0003735 ... A0QSL4 30038002
    458351 6dzp:g (3.42) BS01 rna ? GO:0003735 ... A0R554 30038002
    458352 6dzp:y (3.42) BS01 rna ? GO:0003735 ... A0R552 30038002
    458353 6dzq:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 30351002
    458354 6dzq:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 30351002
    458355 6dzq:A (2.25) BS03 HJP 3.1.-.- GO:0003723 ... C3W5S0 30351002 MOAD: ic50=0.043uM
    458356 6dzs:A (2.62) BS01 NAP 1.1.1.3 GO:0000166 ... K5BJC9 N/A
    458357 6dzs:B (2.62) BS01 NAP 1.1.1.3 GO:0000166 ... K5BJC9 N/A
    458358 6dzs:C (2.62) BS01 NAP 1.1.1.3 GO:0000166 ... K5BJC9 N/A
    458359 6dzs:D (2.62) BS01 NAP 1.1.1.3 GO:0000166 ... K5BJC9 N/A
    458360 6dzt:A (2.99) BS01 dna ? GO:0000785 ... P02299 31127102
    458361 6dzt:A (2.99) BS02 dna ? GO:0000785 ... P02299 31127102
    458362 6dzt:B (2.99) BS01 dna ? GO:0000228 ... P84040 31127102
    458363 6dzt:B (2.99) BS02 dna ? GO:0000228 ... P84040 31127102
    458364 6dzt:C (2.99) BS01 dna ? GO:0000786 ... P84051 31127102
    458365 6dzt:C (2.99) BS02 dna ? GO:0000786 ... P84051 31127102
    458366 6dzt:D (2.99) BS01 dna ? GO:0000786 ... P02283 31127102
    458367 6dzt:D (2.99) BS02 dna ? GO:0000786 ... P02283 31127102
    458368 6dzt:E (2.99) BS01 dna ? GO:0000785 ... P02299 31127102
    458369 6dzt:E (2.99) BS02 dna ? GO:0000785 ... P02299 31127102
    458370 6dzt:F (2.99) BS01 dna ? GO:0000228 ... P84040 31127102
    458371 6dzt:F (2.99) BS02 dna ? GO:0000228 ... P84040 31127102
    458372 6dzt:G (2.99) BS01 dna ? GO:0000786 ... P84051 31127102
    458373 6dzt:G (2.99) BS02 dna ? GO:0000786 ... P84051 31127102
    458374 6dzt:H (2.99) BS01 dna ? GO:0000786 ... P02283 31127102
    458375 6dzt:H (2.99) BS02 dna ? GO:0000786 ... P02283 31127102
    458376 6dzv:A (4.2) BS01 HJM ? GO:0016020 ... P31645 31019304
    458377 6dzv:A (4.2) BS02 Y01 ? GO:0016020 ... P31645 31019304
    458378 6dzw:A (4.3) BS01 8PR ? GO:0016020 ... P31645 31019304 BindingDB: Ki=0.42nM, Kd=0.130000nM, IC50=0.200000nM
    458379 6dzx:A (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458380 6dzx:B (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458381 6dzx:C (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458382 6dzx:D (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458383 6dzx:E (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458384 6dzx:F (1.678) BS01 MED ? GO:0016020 ... C6S9R8 31348565 MOAD: Kd=3.5uM
    458385 6dzy:A (4.1) BS01 HJM ? GO:0016020 ... P31645 31019304
    458386 6dzz:A (3.6) BS01 HJM ? GO:0016020 ... P31645 31019304
    458387 6e02:A (1.76) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458388 6e02:A (1.76) BS02 NSM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458389 6e02:A (1.76) BS03 NSM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458390 6e03:A (1.76) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458391 6e03:A (1.76) BS02 NOE 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458392 6e04:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458393 6e04:A (2.0) BS02 XEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 37011611
    458394 6e05:A (2.5) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458395 6e05:A (2.5) BS02 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458396 6e05:B (2.5) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458397 6e05:B (2.5) BS02 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458398 6e05:C (2.5) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458399 6e05:C (2.5) BS02 CTP 6.3.3.3 GO:0000287 ... P9WPQ5 30289406
    458400 6e05:D (2.5) BS01 MG 6.3.3.3 GO:0000287 ... P9WPQ5 30289406

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).