SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    459001 6e6i:F (2.4) BS02 HVS ? GO:0005737 ... G2IN02 N/A
    459002 6e6i:G (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    459003 6e6i:G (2.4) BS02 HVS ? GO:0005737 ... G2IN02 N/A
    459004 6e6i:H (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    459005 6e6i:H (2.4) BS02 HVS ? GO:0005737 ... G2IN02 N/A
    459006 6e6i:I (2.4) BS01 ZN ? GO:0005737 ... G2IN02 N/A
    459007 6e6i:I (2.4) BS02 HVS ? GO:0005737 ... G2IN02 N/A
    459008 6e6j:A (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459009 6e6j:B (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459010 6e6j:C (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459011 6e6j:D (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459012 6e6j:E (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459013 6e6j:F (2.44) BS01 HWV ? N/A P25440 31969702 BindingDB: Ki=4.6nM
    459014 6e6k:A (1.3) BS01 HVD ? GO:0005501 ... Q96R05 30721022
    459015 6e6l:A (2.08) BS01 RET ? GO:0001523 ... P50120 31557439
    459016 6e6m:A (1.55) BS01 8CB ? GO:0002138 ... P09455 30721022 MOAD: Ki=1662nM
    459017 6e6m:B (1.55) BS01 8CB ? GO:0002138 ... P09455 30721022 MOAD: Ki=1662nM
    459018 6e6m:C (1.55) BS01 8CB ? GO:0002138 ... P09455 30721022 MOAD: Ki=1662nM
    459019 6e6p:A (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    459020 6e6p:B (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    459021 6e6p:C (1.93) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 31390567
    459022 6e6p:C (1.93) BS02 MG 3.6.5.2 GO:0003924 ... P01112 31390567
    459023 6e6p:C (1.93) BS03 CA 3.6.5.2 GO:0003924 ... P01112 31390567
    459024 6e6q:A (1.2) BS01 FES ? N/A Q9HY80 30183257
    459025 6e6q:B (1.2) BS01 FES ? N/A Q9HY80 30183257
    459026 6e6r:A (1.5) BS01 FES ? N/A Q9HY80 30183257
    459027 6e6s:A (1.45) BS01 FES ? N/A Q9HY80 30183257
    459028 6e6s:B (1.45) BS01 FES ? N/A Q9HY80 30183257
    459029 6e6t:A (1.6) BS01 HVV ? N/A A0A1X9WEN9 33017142
    459030 6e6t:B (1.6) BS01 HVV ? N/A A0A1X9WEN9 33017142
    459031 6e6v:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459032 6e6v:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459033 6e6v:A (2.25) BS03 HWA 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459034 6e6w:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459035 6e6w:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459036 6e6w:A (2.35) BS03 HWJ 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459037 6e6x:A (2.5) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459038 6e6x:A (2.5) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459039 6e6x:A (2.5) BS03 HWM 3.1.-.- GO:0003723 ... C3W5S0 31536340
    459040 6e6z:A (1.75) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459041 6e6z:B (1.75) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459042 6e70:A (1.992) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459043 6e70:A (1.992) BS02 CA ? GO:0001523 ... P02766 N/A
    459044 6e70:B (1.992) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459045 6e70:B (1.992) BS02 CA ? GO:0001523 ... P02766 N/A
    459046 6e72:A (1.45) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459047 6e72:B (1.45) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459048 6e73:A (1.797) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459049 6e73:B (1.797) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459050 6e74:A (1.6) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459051 6e74:B (1.6) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459052 6e77:A (1.6) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459053 6e77:B (1.6) BS01 3MI ? GO:0001523 ... P02766 N/A BindingDB: IC50=3100nM, Kd=274nM
    459054 6e78:A (1.499) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459055 6e78:B (1.499) BS01 1FL ? GO:0001523 ... P02766 N/A BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    459056 6e7b:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 30245156
    459057 6e7b:B (3.5) BS01 G2P ? GO:0000226 ... Q13509 30245156
    459058 6e7c:A (3.65) BS01 MG 3.6.5.- GO:0000226 ... P68363 30245156
    459059 6e7c:A (3.65) BS02 GTP 3.6.5.- GO:0000226 ... P68363 30245156
    459060 6e7c:B (3.65) BS01 G2P ? GO:0000226 ... Q9BVA1 30245156
    459061 6e7h:C (3.3) BS01 NGC ? GO:0019031 ... Q6DQ33 31189111
    459062 6e7i:A (1.8) BS01 peptide 2.4.1.41 N/A Q10471 32325029
    459063 6e7i:A (1.8) BS02 UDP 2.4.1.41 N/A Q10471 32325029
    459064 6e7i:A (1.8) BS03 MN 2.4.1.41 N/A Q10471 32325029
    459065 6e7j:A (1.3) BS01 HWY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 30354121 MOAD: Ki=0.33nM
    459066 6e7j:B (1.3) BS01 HWY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 30354121
    459067 6e7k:A (2.8) BS01 FUC 3.1.1.32
    3.1.1.34
    GO:0001523 ... P06858 30559189
    459068 6e7k:A (2.8) BS02 CA 3.1.1.32
    3.1.1.34
    GO:0001523 ... P06858 30559189
    459069 6e7k:B (2.8) BS01 CA 3.1.1.32
    3.1.1.34
    GO:0001523 ... P06858 30559189
    459070 6e7m:B (2.7) BS01 RET ? GO:0001523 ... P50120 31557439
    459071 6e7m:D (2.7) BS01 RET ? GO:0001523 ... P50120 31557439
    459072 6e7p:A (3.5) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459073 6e7p:B (3.5) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459074 6e7p:C (3.5) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459075 6e7p:D (3.5) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459076 6e7r:A (2.1) BS01 HYS ? GO:0004930 ... A0A1L8F5J9 30659174
    459077 6e7r:B (2.1) BS01 HYS ? N/A Q00960 30659174
    459078 6e7r:C (2.1) BS01 HYS ? GO:0004930 ... A0A1L8F5J9 30659174
    459079 6e7r:D (2.1) BS01 HYS ? N/A Q00960 30659174
    459080 6e7s:A (2.72) BS01 HZ4 ? GO:0004930 ... A0A1L8F5J9 N/A
    459081 6e7s:B (2.72) BS01 HZ4 ? N/A Q00960 N/A
    459082 6e7s:C (2.72) BS01 HZ4 ? GO:0004930 ... A0A1L8F5J9 N/A
    459083 6e7s:D (2.72) BS01 HZ4 ? N/A Q00960 N/A
    459084 6e7t:A (2.31) BS01 HYY ? GO:0004930 ... A0A1L8F5J9 N/A
    459085 6e7t:B (2.31) BS01 HYY ? N/A Q00960 N/A
    459086 6e7t:C (2.31) BS01 HYY ? GO:0004930 ... A0A1L8F5J9 N/A
    459087 6e7t:D (2.31) BS01 HYY ? N/A Q00960 N/A
    459088 6e7u:A (2.27) BS01 HX7 ? GO:0004930 ... A0A1L8F5J9 N/A
    459089 6e7u:B (2.27) BS01 HX7 ? N/A Q00960 N/A
    459090 6e7u:C (2.27) BS01 HX7 ? GO:0004930 ... A0A1L8F5J9 N/A
    459091 6e7u:D (2.27) BS01 HX7 ? N/A Q00960 N/A
    459092 6e7v:A (2.6) BS01 T88 ? GO:0004930 ... A0A1L8F5J9 N/A
    459093 6e7v:B (2.6) BS01 T88 ? N/A Q00960 N/A
    459094 6e7v:C (2.6) BS01 T88 ? GO:0004930 ... A0A1L8F5J9 N/A
    459095 6e7v:D (2.6) BS01 T88 ? N/A Q00960 N/A
    459096 6e7w:A (2.67) BS01 HXM ? GO:0004930 ... A0A1L8F5J9 N/A
    459097 6e7w:B (2.67) BS01 HXM ? N/A Q00960 N/A
    459098 6e7w:C (2.67) BS01 HXM ? GO:0004930 ... A0A1L8F5J9 N/A
    459099 6e7w:D (2.67) BS01 HXM ? N/A Q00960 N/A
    459100 6e7x:A (2.58) BS01 T97 ? GO:0004930 ... A0A1L8F5J9 N/A
    459101 6e7x:B (2.58) BS01 T97 ? N/A Q00960 N/A
    459102 6e7x:C (2.58) BS01 T97 ? GO:0004930 ... A0A1L8F5J9 N/A
    459103 6e7x:D (2.58) BS01 T97 ? N/A Q00960 N/A
    459104 6e7y:A (3.57) BS01 PIO ? GO:0001891 ... Q9GZU1 30305615
    459105 6e7y:B (3.57) BS01 PIO ? GO:0001891 ... Q9GZU1 30305615
    459106 6e7y:C (3.57) BS01 PIO ? GO:0001891 ... Q9GZU1 30305615
    459107 6e7y:D (3.57) BS01 PIO ? GO:0001891 ... Q9GZU1 30305615
    459108 6e7z:A (3.73) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459109 6e7z:A (3.73) BS02 AQV ? GO:0001891 ... Q9GZU1 30305615
    459110 6e7z:B (3.73) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459111 6e7z:B (3.73) BS02 AQV ? GO:0001891 ... Q9GZU1 30305615
    459112 6e7z:C (3.73) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459113 6e7z:C (3.73) BS02 AQV ? GO:0001891 ... Q9GZU1 30305615
    459114 6e7z:D (3.73) BS01 HZ7 ? GO:0001891 ... Q9GZU1 30305615
    459115 6e7z:D (3.73) BS02 AQV ? GO:0001891 ... Q9GZU1 30305615
    459116 6e83:B (-1.00) BS01 peptide ? GO:0008270 ... Q8IYH5 30217978
    459117 6e83:B (-1.00) BS02 ZN ? GO:0008270 ... Q8IYH5 30217978
    459118 6e83:B (-1.00) BS03 ZN ? GO:0008270 ... Q8IYH5 30217978
    459119 6e85:A (1.25) BS01 POP 1.1.1.262 GO:0016491 ... A0A1Y0PY16 36695589
    459120 6e86:B (-1.00) BS01 peptide ? GO:0008270 ... Q8IYH5 30217978
    459121 6e86:B (-1.00) BS02 ZN ? GO:0008270 ... Q8IYH5 30217978
    459122 6e86:B (-1.00) BS03 ZN ? GO:0008270 ... Q8IYH5 30217978
    459123 6e87:A (1.952) BS01 FE2 1.13.11.20 GO:0000097 ... Q16878 30946568
    459124 6e88:A (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459125 6e88:B (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459126 6e88:C (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459127 6e88:D (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459128 6e88:H (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459129 6e88:I (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459130 6e88:J (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459131 6e88:K (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459132 6e88:L (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459133 6e88:M (4.8) BS01 GTP 3.6.5.- GO:0000132 ... P34690 30245157
    459134 6e88:N (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459135 6e88:O (4.8) BS01 GDP ? GO:0000212 ... P52275 30245157
    459136 6e8c:A (2.12) BS01 dna ? GO:0003677 ... Q9UBX2 30540931
    459137 6e8c:A (2.12) BS02 dna ? GO:0003677 ... Q9UBX2 30540931
    459138 6e8f:A (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    459139 6e8f:A (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    459140 6e8f:A (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    459141 6e8f:A (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    459142 6e8f:B (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    459143 6e8f:B (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    459144 6e8f:B (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    459145 6e8f:B (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    459146 6e8f:B (2.99) BS05 CA ? GO:0005509 ... Q96QU1 32963095
    459147 6e8f:C (2.99) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    459148 6e8f:C (2.99) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    459149 6e8f:C (2.99) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    459150 6e8f:C (2.99) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    459151 6e8i:A (1.68) BS01 PTR ? N/A D3HJY4 30382091
    459152 6e8k:A (1.71) BS01 peptide ? N/A D3HJY4 30382091
    459153 6e8m:A (1.61) BS01 peptide ? N/A D3HJY4 30382091
    459154 6e8o:A (1.7) BS01 AMP ? GO:0000166 ... Q47NR5 N/A
    459155 6e8o:B (1.7) BS01 AMP ? GO:0000166 ... Q47NR5 N/A
    459156 6e8p:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041
    459157 6e8p:A (1.9) BS02 HZJ 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041
    459158 6e8q:A (2.2) BS01 HEM ? GO:0004497 ... A6ZSR0 30397057
    459159 6e8q:A (2.2) BS02 X2N ? GO:0004497 ... A6ZSR0 30397057
    459160 6e8r:A (2.268) BS01 peptide ? GO:0035091 ... Q86XE0 N/A
    459161 6e8r:B (2.268) BS01 peptide ? GO:0035091 ... Q86XE0 N/A
    459162 6e8x:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041
    459163 6e8x:A (1.6) BS02 J0A 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041 MOAD: Ki=0.07uM
    459164 6e8y:A (1.85) BS01 3SY 1.1.1.8 GO:0004368 ... P21695 30640445
    459165 6e8z:A (2.1) BS01 NAD 1.1.1.8 GO:0004368 ... P21695 30640445 MOAD: Kd=7uM
    459166 6e8z:A (2.1) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    459167 6e8z:B (2.1) BS01 NAD 1.1.1.8 GO:0004368 ... P21695 30640445 MOAD: Kd=7uM
    459168 6e8z:B (2.1) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    459169 6e90:A (2.05) BS01 NAD 1.1.1.8 GO:0004368 ... P21695 30640445
    459170 6e90:A (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    459171 6e90:B (2.05) BS01 NAD 1.1.1.8 GO:0004368 ... P21695 30640445
    459172 6e90:B (2.05) BS02 CA 1.1.1.8 GO:0004368 ... P21695 30640445
    459173 6e90:C (2.05) BS01 NAD 1.1.1.8 GO:0004368 ... P21695 30640445
    459174 6e90:C (2.05) BS02 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    459175 6e90:D (2.05) BS01 PO4 1.1.1.8 GO:0004368 ... P21695 30640445
    459176 6e91:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041
    459177 6e91:A (1.8) BS02 J04 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041 MOAD: Ki=0.08uM
    459178 6e92:A (1.772) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041
    459179 6e92:A (1.772) BS02 HZY 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 30721041 MOAD: Ki=0.002uM
    459180 6e93:A (1.747) BS01 dna ? N/A Q8NAP3 30355731
    459181 6e93:A (1.747) BS02 dna ? N/A Q8NAP3 30355731
    459182 6e93:A (1.747) BS03 ZN ? N/A Q8NAP3 30355731
    459183 6e93:A (1.747) BS04 ZN ? N/A Q8NAP3 30355731
    459184 6e93:A (1.747) BS05 ZN ? N/A Q8NAP3 30355731
    459185 6e93:A (1.747) BS06 ZN ? N/A Q8NAP3 30355731
    459186 6e94:A (1.594) BS01 dna ? N/A Q8NAP3 30355731
    459187 6e94:A (1.594) BS02 dna ? N/A Q8NAP3 30355731
    459188 6e94:A (1.594) BS03 ZN ? N/A Q8NAP3 30355731
    459189 6e94:A (1.594) BS04 ZN ? N/A Q8NAP3 30355731
    459190 6e94:A (1.594) BS05 ZN ? N/A Q8NAP3 30355731
    459191 6e94:A (1.594) BS06 ZN ? N/A Q8NAP3 30355731
    459192 6e97:A (1.8) BS01 J2J ? GO:0000166 ... Q47NR5 N/A
    459193 6e97:B (1.8) BS01 J2J ? GO:0000166 ... Q47NR5 N/A
    459194 6e99:A (1.88) BS01 peptide 2.7.11.11 GO:0000287 ... P00517 30384606
    459195 6e99:A (1.88) BS02 J0G 2.7.11.11 GO:0000287 ... P00517 30384606 MOAD: ic50=1uM
    459196 6e9a:A (1.22) BS01 J0S 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 30354121
    459197 6e9a:B (1.22) BS01 J0S 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 30354121 MOAD: Ki=0.0012nM
    459198 6e9b:D (3.15) BS01 BGC N/A N/A N/A 31062073
    459199 6e9e:A (3.4) BS01 rna ? N/A B0MS50 30241607
    459200 6e9f:A (3.3) BS01 rna ? N/A B0MS50 30241607

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).