SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460201 6ek9:A (1.5) BS12 CU1 ? N/A D6ES11 29292456
    460202 6ek9:A (1.5) BS13 CU1 ? N/A D6ES11 29292456
    460203 6ek9:A (1.5) BS14 CU1 ? N/A D6ES11 29292456
    460204 6ek9:A (1.5) BS15 CU1 ? N/A D6ES11 29292456
    460205 6ek9:A (1.5) BS16 CU1 ? N/A D6ES11 29292456
    460206 6ek9:A (1.5) BS17 CU1 ? N/A D6ES11 29292456
    460207 6ek9:A (1.5) BS18 CU1 ? N/A D6ES11 29292456
    460208 6ek9:A (1.5) BS19 CU1 ? N/A D6ES11 29292456
    460209 6ek9:A (1.5) BS20 CU1 ? N/A D6ES11 29292456
    460210 6ekb:A (1.9) BS01 ZN ? N/A Q9SN73 29217567
    460211 6ekb:A (1.9) BS02 ZN ? N/A Q9SN73 29217567
    460212 6ekb:A (1.9) BS03 ZN ? N/A Q9SN73 29217567
    460213 6ekc:B1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460214 6ekc:B1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460215 6ekc:B2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460216 6ekc:B2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460217 6ekc:B3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460218 6ekc:B3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460219 6ekc:B4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460220 6ekc:B4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460221 6ekc:B5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460222 6ekc:B5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460223 6ekc:B6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460224 6ekc:B6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460225 6ekc:B7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460226 6ekc:B7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460227 6ekc:B8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460228 6ekc:B8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460229 6ekc:D1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460230 6ekc:D1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460231 6ekc:D2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460232 6ekc:D2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460233 6ekc:D3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460234 6ekc:D3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460235 6ekc:D4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460236 6ekc:D4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460237 6ekc:D5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460238 6ekc:D5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460239 6ekc:D6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460240 6ekc:D6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460241 6ekc:D7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460242 6ekc:D7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460243 6ekc:D8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460244 6ekc:D8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460245 6ekc:F1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460246 6ekc:F1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460247 6ekc:F2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460248 6ekc:F2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460249 6ekc:F3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460250 6ekc:F3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460251 6ekc:F4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460252 6ekc:F4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460253 6ekc:F5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460254 6ekc:F5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460255 6ekc:F6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460256 6ekc:F6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460257 6ekc:F7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460258 6ekc:F7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460259 6ekc:F8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460260 6ekc:F8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460261 6ekc:H1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460262 6ekc:H1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460263 6ekc:H2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460264 6ekc:H2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460265 6ekc:H3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460266 6ekc:H3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460267 6ekc:H4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460268 6ekc:H4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460269 6ekc:H5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460270 6ekc:H5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460271 6ekc:H6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460272 6ekc:H6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460273 6ekc:H7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460274 6ekc:H7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460275 6ekc:H8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460276 6ekc:H8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460277 6ekc:J1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460278 6ekc:J1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460279 6ekc:J2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460280 6ekc:J2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460281 6ekc:J3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460282 6ekc:J3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460283 6ekc:J4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460284 6ekc:J4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460285 6ekc:J5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460286 6ekc:J5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460287 6ekc:J6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460288 6ekc:J6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460289 6ekc:J7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460290 6ekc:J7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460291 6ekc:J8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460292 6ekc:J8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460293 6ekc:L1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460294 6ekc:L1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460295 6ekc:L2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460296 6ekc:L2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460297 6ekc:L3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460298 6ekc:L3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460299 6ekc:L4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460300 6ekc:L4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460301 6ekc:L5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460302 6ekc:L5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460303 6ekc:L6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460304 6ekc:L6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460305 6ekc:L7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460306 6ekc:L7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460307 6ekc:L8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460308 6ekc:L8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460309 6ekc:N1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460310 6ekc:N1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460311 6ekc:N2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460312 6ekc:N2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460313 6ekc:N3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460314 6ekc:N3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460315 6ekc:N4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460316 6ekc:N4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460317 6ekc:N5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460318 6ekc:N5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460319 6ekc:N6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460320 6ekc:N6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460321 6ekc:N7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460322 6ekc:N7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460323 6ekc:N8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460324 6ekc:N8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460325 6ekc:P1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460326 6ekc:P1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460327 6ekc:P2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460328 6ekc:P2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460329 6ekc:P3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460330 6ekc:P3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460331 6ekc:P4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460332 6ekc:P4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460333 6ekc:P5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460334 6ekc:P5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460335 6ekc:P6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460336 6ekc:P6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460337 6ekc:P7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460338 6ekc:P7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460339 6ekc:P8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460340 6ekc:P8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460341 6ekc:R1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460342 6ekc:R1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460343 6ekc:R2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460344 6ekc:R2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460345 6ekc:R3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460346 6ekc:R3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460347 6ekc:R4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460348 6ekc:R4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460349 6ekc:R5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460350 6ekc:R5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460351 6ekc:R6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460352 6ekc:R6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460353 6ekc:R7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460354 6ekc:R7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460355 6ekc:R8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460356 6ekc:R8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460357 6ekc:T1 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460358 6ekc:T1 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460359 6ekc:T2 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460360 6ekc:T2 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460361 6ekc:T3 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460362 6ekc:T3 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460363 6ekc:T4 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460364 6ekc:T4 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460365 6ekc:T5 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460366 6ekc:T5 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460367 6ekc:T6 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460368 6ekc:T6 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460369 6ekc:T7 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460370 6ekc:T7 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460371 6ekc:T8 (2.63) BS01 ZN ? N/A Q9SN73 29217567
    460372 6ekc:T8 (2.63) BS02 ZN ? N/A Q9SN73 29217567
    460373 6ekd:A (2.1) BS01 B9K 2.7.11.24 GO:0004672 ... P53779 30087925 MOAD: ic50=184nM
    460374 6eke:B (1.7) BS01 ZN ? GO:0046872 ... A0A3B6UEU4 29956878
    460375 6ekg:Y (1.15) BS01 MG ? GO:0000160 ... Q6LYQ5 29358409
    460376 6ekh:Y (2.654) BS01 MG ? GO:0000160 ... Q6LYQ5 29358409
    460377 6ekh:Y (2.654) BS02 BEF ? GO:0000160 ... Q6LYQ5 29358409
    460378 6eki:A (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460379 6eki:B (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460380 6eki:C (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460381 6eki:D (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460382 6eki:E (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460383 6eki:F (2.555) BS01 ZN N/A GO:0004089 ... N/A 29685353
    460384 6ekj:A (1.6) BS01 peptide ? GO:0000122 ... Q9D752 N/A
    460385 6ekk:C (1.82) BS01 GDP ? GO:0003924 ... Q15286 N/A
    460386 6ekk:D (1.82) BS01 GDP ? GO:0003924 ... Q15286 N/A
    460387 6ekl:A (1.6) BS01 peptide ? GO:0000122 ... Q9D752 N/A
    460388 6ekm:A (2.76) BS01 peptide ? GO:0000122 ... Q9D752 N/A
    460389 6ekn:A (1.2) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460390 6ekn:A (1.2) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460391 6ekn:A (1.2) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460392 6ekn:A (1.2) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460393 6ekn:A (1.2) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460394 6ekn:A (1.2) BS06 B9N 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=510nM
    460395 6eko:A (2.284) BS01 dna 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460396 6eko:A (2.284) BS02 dna 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460397 6eko:A (2.284) BS03 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460398 6eko:A (2.284) BS04 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460399 6eko:B (2.284) BS01 dna 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460400 6eko:B (2.284) BS02 dna 3.1.21.4 GO:0006259 ... A0A452CST9 30445642

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).