SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460401 6eko:B (2.284) BS03 CA 3.1.21.4 GO:0006259 ... A0A452CST9 30445642
    460402 6ekp:A (1.46) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460403 6ekp:B (1.46) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460404 6ekp:B (1.46) BS02 IAC ? GO:0003677 ... P0A881 N/A
    460405 6ekq:A (1.65) BS01 B0H ? N/A P55201 29902720 MOAD: Kd=10.9uM
    BindingDB: IC50=30600nM, Kd=3500nM
    460406 6ekq:B (1.65) BS01 B0H ? N/A P55201 29902720 MOAD: Kd=10.9uM
    BindingDB: IC50=30600nM, Kd=3500nM
    460407 6eks:A (1.87) BS01 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    460408 6eks:A (1.87) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    460409 6eks:A (1.87) BS03 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    460410 6eks:A (1.87) BS04 G39 3.2.1.18 GO:0004308 ... P0C6E9 29149072 MOAD: ic50=144uM
    460411 6eku:A (1.75) BS01 ZMR 3.2.1.18 GO:0004308 ... P0C6E9 29149072 MOAD: ic50=52uM
    460412 6eku:A (1.75) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 29149072
    460413 6ekw:A (1.43) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460414 6ekw:A (1.43) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460415 6ekw:A (1.43) BS03 NPY 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460416 6ekx:A (1.13) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460417 6ekx:A (1.13) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460418 6ekx:A (1.13) BS03 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460419 6ekx:A (1.13) BS04 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460420 6eky:A (1.23) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460421 6eky:A (1.23) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460422 6eky:A (1.23) BS03 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460423 6eky:A (1.23) BS04 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460424 6eky:A (1.23) BS05 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460425 6eky:A (1.23) BS06 1NP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460426 6ekz:A (1.08) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460427 6ekz:A (1.08) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460428 6ekz:A (1.08) BS03 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460429 6ekz:A (1.08) BS04 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460430 6ekz:A (1.08) BS05 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460431 6ekz:A (1.08) BS06 SNP 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460432 6el0:A (1.65) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460433 6el0:A (1.65) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460434 6el0:A (1.65) BS03 SYN 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460435 6el2:A (1.9) BS01 DCC ? GO:0003677 ... Q4J9S1 30948713
    460436 6el2:B (1.9) BS01 DCC ? GO:0003677 ... Q4J9S1 30948713
    460437 6el3:A (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460438 6el3:B (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460439 6el3:C (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460440 6el3:D (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460441 6el3:E (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460442 6el3:F (1.899) BS01 NAP 1.3.1.3 GO:0005829 ... Q9STX2 30172078
    460443 6el4:A (1.53) BS01 HEM 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460444 6el4:A (1.53) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460445 6el4:A (1.53) BS03 VOH 1.11.2.1 GO:0004601 ... B9W4V6 30376293
    460446 6el5:A (1.67) BS01 PU1 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=0.000000064M
    BindingDB: EC50=1200nM
    460447 6el6:A (2.4) BS01 peptide ? N/A P04150 29424542
    460448 6el6:A (2.4) BS02 B9Q ? N/A P04150 29424542 MOAD: ic50=6.3nM
    BindingDB: IC50=2.8nM, EC50=1.3nM
    460449 6el7:A (2.18) BS01 peptide ? N/A P04150 29424542
    460450 6el7:A (2.18) BS02 B9T ? N/A P04150 29424542 BindingDB: EC50=6.4nM, IC50=2.4nM
    460451 6el8:A (1.61) BS01 dna ? GO:0003700 ... O15353 N/A
    460452 6el8:A (1.61) BS02 dna ? GO:0003700 ... O15353 N/A
    460453 6el8:D (1.61) BS01 dna ? GO:0003700 ... O15353 N/A
    460454 6el8:D (1.61) BS02 dna ? GO:0003700 ... O15353 N/A
    460455 6el8:D (1.61) BS03 dna ? GO:0003700 ... O15353 N/A
    460456 6el9:A (2.19) BS01 peptide ? N/A P04150 29424542
    460457 6el9:A (2.19) BS02 B9W ? N/A P04150 29424542 MOAD: ic50=3.8nM
    BindingDB: EC50=11nM, IC50=158nM
    460458 6ela:A (1.485) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460459 6ela:A (1.485) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460460 6ela:A (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460461 6ela:A (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460462 6ela:A (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460463 6ela:A (1.485) BS06 B9Z 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=26nM
    460464 6ela:B (1.485) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460465 6ela:B (1.485) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460466 6ela:B (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460467 6ela:B (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460468 6ela:B (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460469 6ela:B (1.485) BS06 B9Z 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=26nM
    460470 6ela:C (1.485) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460471 6ela:C (1.485) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460472 6ela:C (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460473 6ela:C (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460474 6ela:C (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460475 6ela:C (1.485) BS06 B9Z 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=26nM
    460476 6ela:D (1.485) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460477 6ela:D (1.485) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    460478 6ela:D (1.485) BS03 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460479 6ela:D (1.485) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460480 6ela:D (1.485) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    460481 6ela:D (1.485) BS06 B9Z 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=26nM
    460482 6elb:A (1.437) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460483 6elb:B (1.437) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460484 6elc:A (1.41) BS01 BMA ? N/A B3GVK1 29988048
    460485 6elc:A (1.41) BS02 MAN ? N/A B3GVK1 29988048
    460486 6elc:A (1.41) BS03 GLC ? N/A B3GVK1 29988048
    460487 6elf:A (1.832) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460488 6elf:A (1.832) BS02 IAC ? GO:0003677 ... P0A881 N/A
    460489 6elf:B (1.832) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460490 6elg:A (1.38) BS01 3BO ? GO:0003677 ... P0A881 N/A
    460491 6elg:A (1.38) BS02 3BO ? GO:0003677 ... P0A881 N/A
    460492 6elg:B (1.38) BS01 3BO ? GO:0003677 ... P0A881 N/A
    460493 6eli:A (2.2) BS01 T27 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29643235
    460494 6eli:A (2.2) BS02 BA5 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29643235
    460495 6eli:A (2.2) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29643235
    460496 6eli:A (2.2) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 29643235
    460497 6elk:A (1.65) BS01 MN 1.15.1.1 GO:0004784 ... P41977 29178484
    460498 6elk:C (1.65) BS01 MN 1.15.1.1 GO:0004784 ... P41977 29178484
    460499 6eln:A (1.6) BS01 P4A 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=0.000000064M
    460500 6elo:A (1.8) BS01 BAW 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=0.000000064M
    460501 6elp:A (1.85) BS01 BA8 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=0.000000064M
    460502 6elq:A (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460503 6elq:A (2.52) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460504 6elq:A (2.52) BS03 BF8 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460505 6elq:B (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460506 6elq:B (2.52) BS02 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460507 6elq:B (2.52) BS03 BF8 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460508 6elq:X (2.52) BS01 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460509 6elq:X (2.52) BS02 BF8 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460510 6elq:X (2.52) BS03 SF4 1.2.7.4 GO:0003824 ... Q3AE44 29024326
    460511 6elr:A (1.8) BS01 BFK 2.7.10.2 GO:0004672 ... P23458 N/A BindingDB: IC50=<3.0nM, EC50=99nM
    460512 6elr:B (1.8) BS01 BFK 2.7.10.2 GO:0004672 ... P23458 N/A BindingDB: IC50=<3.0nM, EC50=99nM
    460513 6els:A (1.346) BS01 CU 1.10.3.1 GO:0004097 ... P43309 30825403
    460514 6els:A (1.346) BS02 CU 1.10.3.1 GO:0004097 ... P43309 30825403
    460515 6els:A (1.346) BS03 O 1.10.3.1 GO:0004097 ... P43309 30825403
    460516 6elt:A (1.35) BS01 CA 1.10.3.1 GO:0004097 ... P43309 30825403
    460517 6elv:A (1.05) BS01 CA 1.10.3.1 GO:0004097 ... P43309 30825403
    460518 6ely:A (2.84) BS01 BFW 3.2.2.22 GO:0017148 ... P81446 29792147
    460519 6elz:A (3.3) BS01 rna ? GO:0000027 ... Q08235 29245012
    460520 6elz:B (3.3) BS01 rna ? GO:0000027 ... P14126 29245012
    460521 6elz:C (3.3) BS01 rna ? GO:0002181 ... P10664 29245012
    460522 6elz:C (3.3) BS02 rna ? GO:0002181 ... P10664 29245012
    460523 6elz:D (3.3) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 29245012
    460524 6elz:E (3.3) BS01 rna ? GO:0000027 ... Q02326 29245012
    460525 6elz:F (3.3) BS01 rna ? GO:0000463 ... P05737 29245012
    460526 6elz:G (3.3) BS01 rna ? GO:0000470 ... P17076 29245012
    460527 6elz:G (3.3) BS02 rna ? GO:0000470 ... P17076 29245012
    460528 6elz:G (3.3) BS03 rna ? GO:0000470 ... P17076 29245012
    460529 6elz:H (3.3) BS01 rna ? GO:0002181 ... P05738 29245012
    460530 6elz:I (3.3) BS01 rna ? GO:0003682 ... Q07896 29245012
    460531 6elz:J (3.3) BS01 rna ? GO:0000280 ... P36049 29245012
    460532 6elz:K (3.3) BS01 rna ? GO:0000463 ... P38779 29245012
    460533 6elz:L (3.3) BS01 rna ? GO:0002181 ... Q12690 29245012
    460534 6elz:L (3.3) BS02 rna ? GO:0002181 ... Q12690 29245012
    460535 6elz:M (3.3) BS01 rna ? GO:0000027 ... P36105 29245012
    460536 6elz:N (3.3) BS01 rna ? GO:0002181 ... P05748 29245012
    460537 6elz:N (3.3) BS02 rna ? GO:0002181 ... P05748 29245012
    460538 6elz:O (3.3) BS01 rna ? GO:0000470 ... P26784 29245012
    460539 6elz:P (3.3) BS01 rna ? GO:0000448 ... P05740 29245012
    460540 6elz:P (3.3) BS02 rna ? GO:0000448 ... P05740 29245012
    460541 6elz:Q (3.3) BS01 rna ? GO:0002181 ... P0CX49 29245012
    460542 6elz:R (3.3) BS01 rna ? GO:0002181 ... P0CX82 29245012
    460543 6elz:S (3.3) BS01 rna ? GO:0002181 ... P0CX23 29245012
    460544 6elz:T (3.3) BS01 rna ? GO:0002181 ... Q02753 29245012
    460545 6elz:U (3.3) BS01 rna ? GO:0002181 ... P05749 29245012
    460546 6elz:V (3.3) BS01 rna ? GO:0002181 ... P0CX41 29245012
    460547 6elz:W (3.3) BS01 rna ? GO:0000027 ... P33201 29245012
    460548 6elz:X (3.3) BS01 rna ? GO:0000027 ... P04456 29245012
    460549 6elz:X (3.3) BS02 rna ? GO:0000027 ... P04456 29245012
    460550 6elz:Y (3.3) BS01 rna ? GO:0002181 ... P05743 29245012
    460551 6elz:Y (3.3) BS02 rna ? GO:0002181 ... P05743 29245012
    460552 6elz:Z (3.3) BS01 rna ? GO:0002181 ... P0C2H6 29245012
    460553 6elz:a (3.3) BS01 rna ? GO:0002181 ... P02406 29245012
    460554 6elz:b (3.3) BS01 rna ? GO:0000054 ... Q02892 29245012
    460555 6elz:c (3.3) BS01 rna ? GO:0002181 ... P14120 29245012
    460556 6elz:d (3.3) BS01 rna ? GO:0002181 ... P0C2H8 29245012
    460557 6elz:e (3.3) BS01 rna ? GO:0002181 ... P38061 29245012
    460558 6elz:f (3.3) BS01 rna ? GO:0000027 ... P05744 29245012
    460559 6elz:g (3.3) BS01 rna ? GO:0002181 ... P87262 29245012
    460560 6elz:h (3.3) BS01 rna ? GO:0000463 ... P0CX84 29245012
    460561 6elz:h (3.3) BS02 rna ? GO:0000463 ... P0CX84 29245012
    460562 6elz:i (3.3) BS01 rna ? GO:0002181 ... P05745 29245012
    460563 6elz:j (3.3) BS01 rna ? GO:0000448 ... P49166 29245012
    460564 6elz:j (3.3) BS02 rna ? GO:0000448 ... P49166 29245012
    460565 6elz:j (3.3) BS03 ZN ? GO:0000448 ... P49166 29245012
    460566 6elz:k (3.3) BS01 rna ? GO:0002181 ... P49167 29245012
    460567 6elz:l (3.3) BS01 rna ? GO:0000463 ... Q08962 29245012
    460568 6elz:m (3.3) BS01 rna ? GO:0000463 ... Q04660 29245012
    460569 6elz:m (3.3) BS02 rna ? GO:0000463 ... Q04660 29245012
    460570 6elz:n (3.3) BS01 rna ? GO:0000462 ... P53261 29245012
    460571 6elz:n (3.3) BS02 rna ? GO:0000462 ... P53261 29245012
    460572 6elz:o (3.3) BS01 rna ? GO:0000463 ... P53927 29245012
    460573 6elz:q (3.3) BS01 rna 2.1.1.310 GO:0000463 ... P40991 29245012
    460574 6elz:r (3.3) BS01 rna ? GO:0000460 ... P40078 29245012
    460575 6elz:s (3.3) BS01 rna ? GO:0000055 ... P40010 29245012
    460576 6elz:t (3.3) BS01 rna ? GO:0000463 ... P40693 29245012
    460577 6elz:t (3.3) BS02 rna ? GO:0000463 ... P40693 29245012
    460578 6elz:t (3.3) BS03 rna ? GO:0000463 ... P40693 29245012
    460579 6elz:u (3.3) BS01 rna ? GO:0001671 ... Q07915 29245012
    460580 6elz:v (3.3) BS01 rna ? GO:0003674 ... P40007 29245012
    460581 6elz:v (3.3) BS02 rna ? GO:0003674 ... P40007 29245012
    460582 6elz:w (3.3) BS01 rna 2.1.1.167 GO:0000451 ... P25582 29245012
    460583 6elz:y (3.3) BS01 rna ? GO:0000054 ... Q12522 29245012
    460584 6elz:z (3.3) BS01 rna ? GO:0003674 ... P38202 29245012
    460585 6em0:A (2.78) BS01 FAD ? GO:0000166 ... O06647 29297973
    460586 6em0:B (2.78) BS01 FAD ? GO:0000166 ... O06647 29297973
    460587 6em1:3 (3.6) BS01 rna ? GO:0000460 ... P10962 29245012
    460588 6em1:4 (3.6) BS01 rna ? GO:0003674 ... P35178 29245012
    460589 6em1:5 (3.6) BS01 rna ? GO:0003674 ... P53136 29245012
    460590 6em1:A (3.6) BS01 rna ? GO:0000027 ... Q08235 29245012
    460591 6em1:B (3.6) BS01 rna ? GO:0000027 ... P14126 29245012
    460592 6em1:C (3.6) BS01 rna ? GO:0002181 ... P10664 29245012
    460593 6em1:C (3.6) BS02 rna ? GO:0002181 ... P10664 29245012
    460594 6em1:E (3.6) BS01 rna ? GO:0000027 ... Q02326 29245012
    460595 6em1:F (3.6) BS01 rna ? GO:0000463 ... P05737 29245012
    460596 6em1:G (3.6) BS01 rna ? GO:0000470 ... P17076 29245012
    460597 6em1:G (3.6) BS02 rna ? GO:0000470 ... P17076 29245012
    460598 6em1:H (3.6) BS01 rna ? GO:0002181 ... P05738 29245012
    460599 6em1:K (3.6) BS01 rna ? GO:0000463 ... P38779 29245012
    460600 6em1:L (3.6) BS01 rna ? GO:0002181 ... Q12690 29245012

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).