SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460601 6em1:M (3.6) BS01 rna ? GO:0000027 ... P36105 29245012
    460602 6em1:N (3.6) BS01 rna ? GO:0002181 ... P05748 29245012
    460603 6em1:N (3.6) BS02 rna ? GO:0002181 ... P05748 29245012
    460604 6em1:O (3.6) BS01 rna ? GO:0000470 ... P26784 29245012
    460605 6em1:P (3.6) BS01 rna ? GO:0000448 ... P05740 29245012
    460606 6em1:P (3.6) BS02 rna ? GO:0000448 ... P05740 29245012
    460607 6em1:Q (3.6) BS01 rna ? GO:0002181 ... P0CX49 29245012
    460608 6em1:S (3.6) BS01 rna ? GO:0002181 ... P0CX23 29245012
    460609 6em1:V (3.6) BS01 rna ? GO:0002181 ... P0CX41 29245012
    460610 6em1:W (3.6) BS01 rna ? GO:0000027 ... P33201 29245012
    460611 6em1:Y (3.6) BS01 rna ? GO:0002181 ... P05743 29245012
    460612 6em1:Y (3.6) BS02 rna ? GO:0002181 ... P05743 29245012
    460613 6em1:b (3.6) BS01 rna ? GO:0000054 ... Q02892 29245012
    460614 6em1:e (3.6) BS01 rna ? GO:0002181 ... P38061 29245012
    460615 6em1:f (3.6) BS01 rna ? GO:0000027 ... P05744 29245012
    460616 6em1:h (3.6) BS01 rna ? GO:0000463 ... P0CX84 29245012
    460617 6em1:h (3.6) BS02 rna ? GO:0000463 ... P0CX84 29245012
    460618 6em1:i (3.6) BS01 rna ? GO:0002181 ... O14455 29245012
    460619 6em1:j (3.6) BS01 rna ? GO:0000448 ... P49166 29245012
    460620 6em1:j (3.6) BS02 rna ? GO:0000448 ... P49166 29245012
    460621 6em1:j (3.6) BS03 ZN ? GO:0000448 ... P49166 29245012
    460622 6em1:m (3.6) BS01 rna ? GO:0000463 ... Q04660 29245012
    460623 6em1:m (3.6) BS02 rna ? GO:0000463 ... Q04660 29245012
    460624 6em1:n (3.6) BS01 rna ? GO:0000462 ... P53261 29245012
    460625 6em1:n (3.6) BS02 rna ? GO:0000462 ... P53261 29245012
    460626 6em1:o (3.6) BS01 rna ? GO:0000463 ... P53927 29245012
    460627 6em1:r (3.6) BS01 rna ? GO:0000460 ... P40078 29245012
    460628 6em1:t (3.6) BS01 rna ? GO:0000463 ... P40693 29245012
    460629 6em1:u (3.6) BS01 rna ? GO:0001671 ... Q07915 29245012
    460630 6em1:u (3.6) BS02 ZN ? GO:0001671 ... Q07915 29245012
    460631 6em1:v (3.6) BS01 rna ? GO:0003674 ... P40007 29245012
    460632 6em1:v (3.6) BS02 rna ? GO:0003674 ... P40007 29245012
    460633 6em1:x (3.6) BS01 rna ? GO:0000055 ... P38805 29245012
    460634 6em1:y (3.6) BS01 rna ? GO:0000054 ... Q12522 29245012
    460635 6em1:z (3.6) BS01 rna ? GO:0003674 ... P38202 29245012
    460636 6em2:A (1.3) BS01 M77 2.7.11.11 GO:0000287 ... P25321 N/A
    460637 6em3:3 (3.2) BS01 rna ? GO:0000460 ... P10962 29245012
    460638 6em3:4 (3.2) BS01 rna ? GO:0003674 ... P35178 29245012
    460639 6em3:5 (3.2) BS01 rna ? GO:0003674 ... P53136 29245012
    460640 6em3:A (3.2) BS01 rna ? GO:0000027 ... Q08235 29245012
    460641 6em3:B (3.2) BS01 rna ? GO:0000463 ... Q04660 29245012
    460642 6em3:C (3.2) BS01 rna ? GO:0002181 ... P10664 29245012
    460643 6em3:E (3.2) BS01 rna ? GO:0000027 ... Q02326 29245012
    460644 6em3:F (3.2) BS01 rna ? GO:0000463 ... P05737 29245012
    460645 6em3:G (3.2) BS01 rna ? GO:0000470 ... P17076 29245012
    460646 6em3:K (3.2) BS01 rna ? GO:0000463 ... P38779 29245012
    460647 6em3:L (3.2) BS01 rna ? GO:0002181 ... Q12690 29245012
    460648 6em3:M (3.2) BS01 rna ? GO:0000027 ... P36105 29245012
    460649 6em3:N (3.2) BS01 rna ? GO:0002181 ... P05748 29245012
    460650 6em3:O (3.2) BS01 rna ? GO:0000470 ... P26784 29245012
    460651 6em3:P (3.2) BS01 rna ? GO:0000448 ... P05740 29245012
    460652 6em3:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 29245012
    460653 6em3:Y (3.2) BS01 rna ? GO:0002181 ... P05743 29245012
    460654 6em3:e (3.2) BS01 rna ? GO:0002181 ... P38061 29245012
    460655 6em3:f (3.2) BS01 rna ? GO:0000027 ... P05744 29245012
    460656 6em3:h (3.2) BS01 rna ? GO:0000463 ... P0CX84 29245012
    460657 6em3:i (3.2) BS01 rna ? GO:0002181 ... O14455 29245012
    460658 6em3:j (3.2) BS01 rna ? GO:0000448 ... P49166 29245012
    460659 6em3:j (3.2) BS02 rna ? GO:0000448 ... P49166 29245012
    460660 6em3:n (3.2) BS01 rna ? GO:0000462 ... P53261 29245012
    460661 6em3:o (3.2) BS01 rna ? GO:0000463 ... P53927 29245012
    460662 6em3:t (3.2) BS01 rna ? GO:0000463 ... P40693 29245012
    460663 6em3:v (3.2) BS01 rna ? GO:0003674 ... P40007 29245012
    460664 6em3:v (3.2) BS02 rna ? GO:0003674 ... P40007 29245012
    460665 6em3:x (3.2) BS01 rna ? GO:0000055 ... P38805 29245012
    460666 6em4:3 (4.1) BS01 rna ? GO:0000460 ... P10962 29245012
    460667 6em4:4 (4.1) BS01 rna ? GO:0003674 ... P35178 29245012
    460668 6em4:5 (4.1) BS01 rna ? GO:0003674 ... P53136 29245012
    460669 6em4:A (4.1) BS01 rna ? GO:0000027 ... Q08235 29245012
    460670 6em4:B (4.1) BS01 rna ? GO:0000027 ... P14126 29245012
    460671 6em4:C (4.1) BS01 rna ? GO:0002181 ... P10664 29245012
    460672 6em4:C (4.1) BS02 rna ? GO:0002181 ... P10664 29245012
    460673 6em4:E (4.1) BS01 rna ? GO:0000027 ... Q02326 29245012
    460674 6em4:F (4.1) BS01 rna ? GO:0000463 ... P05737 29245012
    460675 6em4:G (4.1) BS01 rna ? GO:0000470 ... P17076 29245012
    460676 6em4:K (4.1) BS01 rna ? GO:0000463 ... P38779 29245012
    460677 6em4:L (4.1) BS01 rna ? GO:0002181 ... Q12690 29245012
    460678 6em4:M (4.1) BS01 rna ? GO:0000027 ... P36105 29245012
    460679 6em4:N (4.1) BS01 rna ? GO:0002181 ... P05748 29245012
    460680 6em4:O (4.1) BS01 rna ? GO:0000470 ... P26784 29245012
    460681 6em4:P (4.1) BS01 rna ? GO:0000448 ... P05740 29245012
    460682 6em4:Q (4.1) BS01 rna ? GO:0002181 ... P0CX49 29245012
    460683 6em4:S (4.1) BS01 rna ? GO:0002181 ... P0CX23 29245012
    460684 6em4:Y (4.1) BS01 rna ? GO:0002181 ... P05743 29245012
    460685 6em4:e (4.1) BS01 rna ? GO:0002181 ... P38061 29245012
    460686 6em4:f (4.1) BS01 rna ? GO:0000027 ... P05744 29245012
    460687 6em4:h (4.1) BS01 rna ? GO:0000463 ... P0CX84 29245012
    460688 6em4:i (4.1) BS01 rna ? GO:0002181 ... O14455 29245012
    460689 6em4:j (4.1) BS01 rna ? GO:0000448 ... P49166 29245012
    460690 6em4:j (4.1) BS02 rna ? GO:0000448 ... P49166 29245012
    460691 6em4:n (4.1) BS01 rna ? GO:0000462 ... P53261 29245012
    460692 6em4:o (4.1) BS01 rna ? GO:0000463 ... P53927 29245012
    460693 6em4:t (4.1) BS01 rna ? GO:0000463 ... P40693 29245012
    460694 6em4:v (4.1) BS01 rna ? GO:0003674 ... P40007 29245012
    460695 6em4:x (4.1) BS01 rna ? GO:0000055 ... P38805 29245012
    460696 6em5:3 (4.3) BS01 rna ? GO:0000460 ... P10962 29245012
    460697 6em5:B (4.3) BS01 rna ? GO:0000027 ... P14126 29245012
    460698 6em5:C (4.3) BS01 rna ? GO:0002181 ... P10664 29245012
    460699 6em5:C (4.3) BS02 rna ? GO:0002181 ... P10664 29245012
    460700 6em5:E (4.3) BS01 rna ? GO:0000027 ... Q02326 29245012
    460701 6em5:F (4.3) BS01 rna ? GO:0000463 ... P05737 29245012
    460702 6em5:G (4.3) BS01 rna ? GO:0000470 ... P17076 29245012
    460703 6em5:H (4.3) BS01 rna ? GO:0002181 ... P05738 29245012
    460704 6em5:J (4.3) BS01 rna ? GO:0000280 ... P36049 29245012
    460705 6em5:K (4.3) BS01 rna ? GO:0000463 ... P38779 29245012
    460706 6em5:L (4.3) BS01 rna ? GO:0002181 ... Q12690 29245012
    460707 6em5:M (4.3) BS01 rna ? GO:0000027 ... P36105 29245012
    460708 6em5:N (4.3) BS01 rna ? GO:0002181 ... P05748 29245012
    460709 6em5:O (4.3) BS01 rna ? GO:0000470 ... P26784 29245012
    460710 6em5:P (4.3) BS01 rna ? GO:0000448 ... P05740 29245012
    460711 6em5:P (4.3) BS02 rna ? GO:0000448 ... P05740 29245012
    460712 6em5:Q (4.3) BS01 rna ? GO:0002181 ... P0CX49 29245012
    460713 6em5:R (4.3) BS01 rna ? GO:0002181 ... P0CX82 29245012
    460714 6em5:S (4.3) BS01 rna ? GO:0002181 ... P0CX23 29245012
    460715 6em5:U (4.3) BS01 rna ? GO:0002181 ... P05749 29245012
    460716 6em5:V (4.3) BS01 rna ? GO:0002181 ... P0CX41 29245012
    460717 6em5:W (4.3) BS01 rna ? GO:0000027 ... P33201 29245012
    460718 6em5:X (4.3) BS01 rna ? GO:0000027 ... P04456 29245012
    460719 6em5:X (4.3) BS02 rna ? GO:0000027 ... P04456 29245012
    460720 6em5:Y (4.3) BS01 rna ? GO:0002181 ... P05743 29245012
    460721 6em5:Y (4.3) BS02 rna ? GO:0002181 ... P05743 29245012
    460722 6em5:b (4.3) BS01 rna ? GO:0000054 ... Q02892 29245012
    460723 6em5:c (4.3) BS01 rna ? GO:0002181 ... P14120 29245012
    460724 6em5:d (4.3) BS01 rna ? GO:0002181 ... P0C2H8 29245012
    460725 6em5:e (4.3) BS01 rna ? GO:0002181 ... P38061 29245012
    460726 6em5:f (4.3) BS01 rna ? GO:0000027 ... P05744 29245012
    460727 6em5:g (4.3) BS01 rna ? GO:0002181 ... P87262 29245012
    460728 6em5:h (4.3) BS01 rna ? GO:0000463 ... P0CX84 29245012
    460729 6em5:h (4.3) BS02 rna ? GO:0000463 ... P0CX84 29245012
    460730 6em5:i (4.3) BS01 rna ? GO:0002181 ... O14455 29245012
    460731 6em5:j (4.3) BS01 rna ? GO:0000448 ... P49166 29245012
    460732 6em5:j (4.3) BS02 rna ? GO:0000448 ... P49166 29245012
    460733 6em5:l (4.3) BS01 rna ? GO:0000463 ... Q08962 29245012
    460734 6em5:m (4.3) BS01 rna ? GO:0000463 ... Q04660 29245012
    460735 6em5:n (4.3) BS01 rna ? GO:0000462 ... P53261 29245012
    460736 6em5:n (4.3) BS02 rna ? GO:0000462 ... P53261 29245012
    460737 6em5:o (4.3) BS01 rna ? GO:0000463 ... P53927 29245012
    460738 6em5:q (4.3) BS01 rna 2.1.1.310 GO:0000463 ... P40991 29245012
    460739 6em5:r (4.3) BS01 rna ? GO:0000460 ... P40078 29245012
    460740 6em5:s (4.3) BS01 rna ? GO:0000055 ... P40010 29245012
    460741 6em5:t (4.3) BS01 rna ? GO:0000463 ... P40693 29245012
    460742 6em5:t (4.3) BS02 rna ? GO:0000463 ... P40693 29245012
    460743 6em5:v (4.3) BS01 rna ? GO:0003674 ... P40007 29245012
    460744 6em5:w (4.3) BS01 rna 2.1.1.167 GO:0000451 ... P25582 29245012
    460745 6em5:x (4.3) BS01 rna ? GO:0000055 ... P38805 29245012
    460746 6em5:y (4.3) BS01 rna ? GO:0000054 ... Q12522 29245012
    460747 6em5:z (4.3) BS01 rna ? GO:0003674 ... P38202 29245012
    460748 6em6:A (1.64) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    460749 6em6:A (1.64) BS02 ADP 2.7.11.11 GO:0000287 ... P25321 N/A
    460750 6em7:A (1.238) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    460751 6em7:A (1.238) BS02 ADP 2.7.11.11 GO:0000287 ... P25321 N/A
    460752 6em7:A (1.238) BS03 RIP 2.7.11.11 GO:0000287 ... P25321 N/A
    460753 6ema:A (1.88) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    460754 6ema:A (1.88) BS02 ATP 2.7.11.11 GO:0000287 ... P25321 N/A
    460755 6emf:B (2.65) BS01 PRO ? GO:0005634 ... G0S4M2 29245012
    460756 6emf:B (2.65) BS02 PRO ? GO:0005634 ... G0S4M2 29245012
    460757 6emh:A (1.76) BS01 BGE 2.7.11.24 GO:0004672 ... P53779 30087925 MOAD: ic50=833nM
    460758 6emh:A (1.76) BS02 C15 2.7.11.24 GO:0004672 ... P53779 30087925
    460759 6emh:B (1.76) BS01 BGE 2.7.11.24 GO:0004672 ... P53779 30087925 MOAD: ic50=833nM
    460760 6emh:B (1.76) BS02 C15 2.7.11.24 GO:0004672 ... P53779 30087925
    460761 6emh:C (1.76) BS01 C15 2.7.11.24 GO:0004672 ... P53779 30087925
    460762 6emh:C (1.76) BS02 BGE 2.7.11.24 GO:0004672 ... P53779 30087925 MOAD: ic50=833nM
    460763 6emh:D (1.76) BS01 BGE 2.7.11.24 GO:0004672 ... P53779 30087925 MOAD: ic50=833nM
    460764 6eml:B (3.6) BS01 rna ? GO:0000028 ... P26783 29155690
    460765 6eml:C (3.6) BS01 rna ? GO:0000028 ... P02407 29155690
    460766 6eml:D (3.6) BS01 rna ? GO:0000028 ... P48589 29155690
    460767 6eml:E (3.6) BS01 rna ? GO:0000028 ... Q01855 29155690
    460768 6eml:F (3.6) BS01 rna ? GO:0000462 ... P0CX51 29155690
    460769 6eml:H (3.6) BS01 rna ? GO:0000054 ... P0CX55 29155690
    460770 6eml:I (3.6) BS01 rna ? GO:0000028 ... P07280 29155690
    460771 6eml:K (3.6) BS01 rna ? GO:0002181 ... Q3E792 29155690
    460772 6eml:L (3.6) BS01 rna ? GO:0000028 ... P0C0X0 29155690
    460773 6eml:N (3.6) BS01 rna ? GO:0000028 ... P05759 29155690
    460774 6eml:P (3.6) BS01 rna ? GO:0000028 ... P32905 29155690
    460775 6eml:Q (3.6) BS01 rna ? GO:0000462 ... P33442 29155690
    460776 6eml:R (3.6) BS01 rna ? GO:0000054 ... P25443 29155690
    460777 6eml:S (3.6) BS01 rna ? GO:0002181 ... P0CX35 29155690
    460778 6eml:T (3.6) BS01 rna ? GO:0000462 ... P0CX37 29155690
    460779 6eml:U (3.6) BS01 rna ? GO:0002181 ... P26786 29155690
    460780 6eml:V (3.6) BS01 rna ? GO:0000462 ... P0CX39 29155690
    460781 6eml:W (3.6) BS01 rna ? GO:0000462 ... O13516 29155690
    460782 6eml:X (3.6) BS01 rna ? GO:0000028 ... P0CX47 29155690
    460783 6eml:Y (3.6) BS01 rna ? GO:0000462 ... P05756 29155690
    460784 6eml:Z (3.6) BS01 rna ? GO:0000028 ... P06367 29155690
    460785 6eml:a (3.6) BS01 rna ? GO:0000447 ... P0C0V8 29155690
    460786 6eml:b (3.6) BS01 rna ? GO:0002181 ... P0C0W1 29155690
    460787 6eml:c (3.6) BS01 rna ? GO:0000462 ... P0CX29 29155690
    460788 6eml:d (3.6) BS01 rna ? GO:0000462 ... P0CX31 29155690
    460789 6eml:e (3.6) BS01 rna ? GO:0000447 ... P38333 29155690
    460790 6eml:f (3.6) BS01 rna ? GO:0000028 ... P35997 29155690
    460791 6eml:g (3.6) BS01 rna ? GO:0002181 ... P0CX33 29155690
    460792 6eml:p (3.6) BS01 rna ? GO:0000056 ... Q99216 29155690
    460793 6eml:r (3.6) BS01 rna 2.7.11.1 GO:0000462 ... P40160 29155690
    460794 6eml:t (3.6) BS01 rna ? GO:0000461 ... Q07381 29155690
    460795 6emm:A (2.47) BS01 NAD 1.1.1.62 GO:0004303 ... Q9BPX1 N/A
    460796 6emn:A (1.25) BS01 78T ? GO:0043190 ... O69061 31308436
    460797 6emu:A (2.29745) BS01 SAM 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639
    460798 6emu:B (2.29745) BS01 SAM 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639
    460799 6emu:C (2.29745) BS01 SAM 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639
    460800 6emv:A (2.90001) BS01 SAH 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).