SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    460801 6emv:B (2.90001) BS01 SAH 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639
    460802 6emv:C (2.90001) BS01 SAH 2.1.1.218
    2.1.1.221
    N/A Q5JD38 29848639
    460803 6emx:A (3.2) BS01 MBR ? GO:0004888 ... Q7NDN8 29694907
    460804 6emx:B (3.2) BS01 MBR ? GO:0004888 ... Q7NDN8 29694907
    460805 6emx:C (3.2) BS01 MBR ? GO:0004888 ... Q7NDN8 29694907
    460806 6emx:D (3.2) BS01 MBR ? GO:0004888 ... Q7NDN8 29694907
    460807 6emx:E (3.2) BS01 MBR ? GO:0004888 ... Q7NDN8 29694907
    460808 6emy:A (2.5) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460809 6emy:A (2.5) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460810 6emy:A (2.5) BS03 dna ? GO:0003677 ... Q7BP35 29551265
    460811 6emy:B (2.5) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460812 6emy:B (2.5) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460813 6emy:B (2.5) BS03 dna ? GO:0003677 ... Q7BP35 29551265
    460814 6emz:A (2.79) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460815 6emz:A (2.79) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460816 6emz:B (2.79) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460817 6emz:B (2.79) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460818 6en0:A (2.8) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460819 6en0:A (2.8) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460820 6en0:B (2.8) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460821 6en0:B (2.8) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460822 6en1:A (2.67) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460823 6en1:A (2.67) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460824 6en1:B (2.67) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460825 6en1:B (2.67) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460826 6en2:A (2.67) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460827 6en2:A (2.67) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460828 6en2:B (2.67) BS01 dna ? GO:0003677 ... Q7BP35 29551265
    460829 6en2:B (2.67) BS02 dna ? GO:0003677 ... Q7BP35 29551265
    460830 6en3:A (2.903) BS01 BMA 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    460831 6en3:A (2.903) BS02 MAN 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    460832 6en3:A (2.903) BS03 MAN 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    460833 6en3:A (2.903) BS04 CA 2.3.1.-
    3.4.22.-
    6.3.2.-
    N/A Q9KS12 29760474
    460834 6en4:C (3.08) BS01 BGZ ? GO:0000245 ... O75533 29656923
    460835 6en4:D (3.08) BS01 ZN ? GO:0000398 ... Q7RTV0 29656923
    460836 6en4:D (3.08) BS02 ZN ? GO:0000398 ... Q7RTV0 29656923
    460837 6en4:D (3.08) BS03 ZN ? GO:0000398 ... Q7RTV0 29656923
    460838 6en5:A (1.75) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 29206036
    460839 6en5:A (1.75) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460840 6en5:A (1.75) BS03 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460841 6en5:A (1.75) BS04 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460842 6en5:B (1.75) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460843 6en5:B (1.75) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460844 6en5:B (1.75) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460845 6en5:C (1.75) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460846 6en5:C (1.75) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460847 6en5:C (1.75) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460848 6en5:D (1.75) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460849 6en5:D (1.75) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460850 6en5:D (1.75) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460851 6en6:A (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460852 6en6:A (1.8) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460853 6en6:A (1.8) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460854 6en6:B (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460855 6en6:B (1.8) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460856 6en6:B (1.8) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460857 6en6:C (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460858 6en6:C (1.8) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460859 6en6:C (1.8) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460860 6en6:D (1.8) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 29206036
    460861 6en6:D (1.8) BS02 BJ2 3.4.15.1 GO:0006508 ... P12821 29206036 MOAD: Ki=11.45nM
    460862 6en6:D (1.8) BS03 MG 3.4.15.1 GO:0006508 ... P12821 29206036
    460863 6en8:A (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460864 6en8:A (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460865 6en8:B (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460866 6en8:B (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460867 6en8:C (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460868 6en8:C (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460869 6en8:D (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460870 6en8:D (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460871 6en8:E (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460872 6en8:E (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460873 6en8:F (3.29) BS01 dna ? GO:0003677 ... Q4J9S1 30948713
    460874 6en8:F (3.29) BS02 dna ? GO:0003677 ... Q4J9S1 30948713
    460875 6en9:L (1.5) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460876 6en9:L (1.5) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460877 6en9:L (1.5) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460878 6en9:L (1.5) BS04 MG 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460879 6en9:M (1.5) BS01 F3S 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460880 6en9:M (1.5) BS02 SF4 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460881 6en9:M (1.5) BS03 FCO 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460882 6en9:M (1.5) BS04 MG 1.12.99.6 GO:0005515 ... P0ACE0 29555844
    460883 6en9:S (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    460884 6en9:S (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    460885 6en9:S (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    460886 6en9:T (1.5) BS01 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    460887 6en9:T (1.5) BS02 F3S 1.12.99.6 GO:0008901 ... P69741 29555844
    460888 6en9:T (1.5) BS03 SF4 1.12.99.6 GO:0008901 ... P69741 29555844
    460889 6enb:A (1.84) BS01 peptide 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536
    460890 6enb:A (1.84) BS02 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536
    460891 6enc:A (1.95) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536
    460892 6enc:A (1.95) BS02 BGW 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536 MOAD: ic50=0.019uM
    BindingDB: IC50=11nM
    460893 6end:A (2.24) BS01 ZN 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536
    460894 6end:A (2.24) BS02 BGK 3.3.2.6
    3.4.11.4
    GO:0003723 ... P09960 29051536 MOAD: ic50=0.133uM
    460895 6ene:A (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    460896 6ene:A (2.3) BS02 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    460897 6ene:B (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    460898 6ene:C (2.3) BS01 C8E ? GO:0006811 ... A0A0M7H8A9 29962203
    460899 6enf:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 29100052
    460900 6enf:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 29100052
    460901 6enf:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 29100052
    460902 6enf:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 29100052
    460903 6enf:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 29100052
    460904 6enf:6 (3.2) BS01 rna ? GO:0002181 ... P0A7M9 29100052
    460905 6enf:C (3.2) BS01 rna ? GO:0000027 ... P60422 29100052
    460906 6enf:C (3.2) BS02 rna ? GO:0000027 ... P60422 29100052
    460907 6enf:D (3.2) BS01 rna ? GO:0000027 ... P60438 29100052
    460908 6enf:E (3.2) BS01 rna ? GO:0001070 ... P60723 29100052
    460909 6enf:F (3.2) BS01 rna ? GO:0000027 ... P62399 29100052
    460910 6enf:F (3.2) BS02 rna ? GO:0000027 ... P62399 29100052
    460911 6enf:F (3.2) BS03 rna ? GO:0000027 ... P62399 29100052
    460912 6enf:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 29100052
    460913 6enf:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 29100052
    460914 6enf:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 29100052
    460915 6enf:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 29100052
    460916 6enf:L (3.2) BS01 rna ? GO:0002181 ... P02413 29100052
    460917 6enf:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 29100052
    460918 6enf:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 29100052
    460919 6enf:O (3.2) BS01 rna ? GO:0002181 ... P0C018 29100052
    460920 6enf:O (3.2) BS02 rna ? GO:0002181 ... P0C018 29100052
    460921 6enf:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 29100052
    460922 6enf:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 29100052
    460923 6enf:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 29100052
    460924 6enf:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 29100052
    460925 6enf:S (3.2) BS01 rna ? GO:0002181 ... P61175 29100052
    460926 6enf:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 29100052
    460927 6enf:U (3.2) BS01 rna ? GO:0000027 ... P60624 29100052
    460928 6enf:V (3.2) BS01 rna ? GO:0000027 ... P68919 29100052
    460929 6enf:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 29100052
    460930 6enf:W (3.2) BS02 rna ? GO:0000027 ... P0A7L8 29100052
    460931 6enf:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 29100052
    460932 6enf:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 29100052
    460933 6enf:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 29100052
    460934 6enf:Z (3.2) BS02 rna ? GO:0000027 ... P0AG51 29100052
    460935 6enf:b (3.2) BS01 rna ? GO:0000028 ... P0A7V0 29100052
    460936 6enf:c (3.2) BS01 rna ? GO:0003676 ... P0A7V3 29100052
    460937 6enf:d (3.2) BS01 rna ? GO:0000028 ... P0A7V8 29100052
    460938 6enf:e (3.2) BS01 rna ? GO:0000028 ... P0A7W1 29100052
    460939 6enf:f (3.2) BS01 rna ? GO:0003735 ... P02358 29100052
    460940 6enf:g (3.2) BS01 rna ? GO:0003723 ... P02359 29100052
    460941 6enf:h (3.2) BS01 rna ? GO:0000028 ... P0A7W7 29100052
    460942 6enf:i (3.2) BS01 rna ? GO:0000049 ... P0A7X3 29100052
    460943 6enf:j (3.2) BS01 rna ? GO:0000049 ... P0A7R5 29100052
    460944 6enf:k (3.2) BS01 rna ? GO:0002181 ... P0A7R9 29100052
    460945 6enf:l (3.2) BS01 rna ? GO:0000049 ... P0A7S3 29100052
    460946 6enf:m (3.2) BS01 rna ? GO:0000049 ... P0A7S9 29100052
    460947 6enf:n (3.2) BS01 rna ? GO:0003735 ... P0AG59 29100052
    460948 6enf:o (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 29100052
    460949 6enf:o (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 29100052
    460950 6enf:p (3.2) BS01 rna ? GO:0000028 ... P0A7T3 29100052
    460951 6enf:q (3.2) BS01 rna ? GO:0000028 ... P0AG63 29100052
    460952 6enf:r (3.2) BS01 rna ? GO:0003735 ... P0A7T7 29100052
    460953 6enf:s (3.2) BS01 rna ? GO:0003723 ... P0A7U3 29100052
    460954 6enf:t (3.2) BS01 rna ? GO:0000028 ... P0A7U7 29100052
    460955 6enf:u (3.2) BS01 rna ? GO:0000028 ... P68679 29100052
    460956 6eng:A (2.3) BS01 BHW 5.6.2.2 GO:0003677 ... P0AES6 30920824
    460957 6eng:B (2.3) BS01 BHW 5.6.2.2 GO:0003677 ... P0AES6 30920824
    460958 6enh:A (1.94) BS01 BHW 5.6.2.2 GO:0003677 ... Q5SHZ4 30920824
    460959 6eni:A (1.1) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460960 6eni:B (1.1) BS01 IAC ? GO:0003677 ... P0A881 N/A
    460961 6eni:B (1.1) BS02 IAC ? GO:0003677 ... P0A881 N/A
    460962 6enj:0 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 29100052
    460963 6enj:1 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 29100052
    460964 6enj:2 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 29100052
    460965 6enj:3 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 29100052
    460966 6enj:4 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 29100052
    460967 6enj:6 (3.7) BS01 rna ? GO:0002181 ... P0A7M9 29100052
    460968 6enj:6 (3.7) BS02 rna ? GO:0002181 ... P0A7M9 29100052
    460969 6enj:7 (3.7) BS01 rna ? GO:0000027 ... P0A7L0 29100052
    460970 6enj:C (3.7) BS01 rna ? GO:0000027 ... P60422 29100052
    460971 6enj:C (3.7) BS02 rna ? GO:0000027 ... P60422 29100052
    460972 6enj:D (3.7) BS01 rna ? GO:0000027 ... P60438 29100052
    460973 6enj:E (3.7) BS01 rna ? GO:0001070 ... P60723 29100052
    460974 6enj:F (3.7) BS01 rna ? GO:0000027 ... P62399 29100052
    460975 6enj:F (3.7) BS02 rna ? GO:0000027 ... P62399 29100052
    460976 6enj:G (3.7) BS01 rna ? GO:0000027 ... P0AG55 29100052
    460977 6enj:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 29100052
    460978 6enj:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 29100052
    460979 6enj:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 29100052
    460980 6enj:L (3.7) BS01 rna ? GO:0002181 ... P02413 29100052
    460981 6enj:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 29100052
    460982 6enj:M (3.7) BS02 rna ? GO:0000027 ... P0ADY7 29100052
    460983 6enj:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 29100052
    460984 6enj:O (3.7) BS01 rna ? GO:0002181 ... P0C018 29100052
    460985 6enj:O (3.7) BS02 rna ? GO:0002181 ... P0C018 29100052
    460986 6enj:P (3.7) BS01 rna ? GO:0000027 ... P0A7K6 29100052
    460987 6enj:P (3.7) BS02 rna ? GO:0000027 ... P0A7K6 29100052
    460988 6enj:Q (3.7) BS01 rna ? GO:0000027 ... P0A7L3 29100052
    460989 6enj:R (3.7) BS01 rna ? GO:0002181 ... P0AG48 29100052
    460990 6enj:S (3.7) BS01 rna ? GO:0002181 ... P61175 29100052
    460991 6enj:T (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 29100052
    460992 6enj:U (3.7) BS01 rna ? GO:0000027 ... P60624 29100052
    460993 6enj:V (3.7) BS01 rna ? GO:0000027 ... P68919 29100052
    460994 6enj:W (3.7) BS01 rna ? GO:0000027 ... P0A7L8 29100052
    460995 6enj:W (3.7) BS02 rna ? GO:0000027 ... P0A7L8 29100052
    460996 6enj:W (3.7) BS03 rna ? GO:0000027 ... P0A7L8 29100052
    460997 6enj:X (3.7) BS01 rna ? GO:0000027 ... P0A7M2 29100052
    460998 6enj:Y (3.7) BS01 rna ? GO:0000027 ... P0A7M6 29100052
    460999 6enj:Z (3.7) BS01 rna ? GO:0000027 ... P0AG51 29100052
    461000 6enj:b (3.7) BS01 rna ? GO:0000028 ... P0A7V0 29100052

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).