SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    461001 6enj:c (3.7) BS01 rna ? GO:0003676 ... P0A7V3 29100052
    461002 6enj:d (3.7) BS01 rna ? GO:0000028 ... P0A7V8 29100052
    461003 6enj:e (3.7) BS01 rna ? GO:0000028 ... P0A7W1 29100052
    461004 6enj:f (3.7) BS01 rna ? GO:0003735 ... P02358 29100052
    461005 6enj:g (3.7) BS01 rna ? GO:0003723 ... P02359 29100052
    461006 6enj:h (3.7) BS01 rna ? GO:0000028 ... P0A7W7 29100052
    461007 6enj:i (3.7) BS01 rna ? GO:0000049 ... P0A7X3 29100052
    461008 6enj:j (3.7) BS01 rna ? GO:0000049 ... P0A7R5 29100052
    461009 6enj:k (3.7) BS01 rna ? GO:0002181 ... P0A7R9 29100052
    461010 6enj:l (3.7) BS01 rna ? GO:0000049 ... P0A7S3 29100052
    461011 6enj:m (3.7) BS01 rna ? GO:0000049 ... P0A7S9 29100052
    461012 6enj:n (3.7) BS01 rna ? GO:0003735 ... P0AG59 29100052
    461013 6enj:o (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 29100052
    461014 6enj:o (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 29100052
    461015 6enj:p (3.7) BS01 rna ? GO:0000028 ... P0A7T3 29100052
    461016 6enj:q (3.7) BS01 rna ? GO:0000028 ... P0AG63 29100052
    461017 6enj:r (3.7) BS01 rna ? GO:0003735 ... P0A7T7 29100052
    461018 6enj:s (3.7) BS01 rna ? GO:0003723 ... P0A7U3 29100052
    461019 6enj:t (3.7) BS01 rna ? GO:0000028 ... P0A7U7 29100052
    461020 6enj:u (3.7) BS01 rna ? GO:0000028 ... P68679 29100052
    461021 6enj:w (3.7) BS01 rna ? GO:0003746 ... P0A6N4 29100052
    461022 6enj:w (3.7) BS02 rna ? GO:0003746 ... P0A6N4 29100052
    461023 6enj:w (3.7) BS03 rna ? GO:0003746 ... P0A6N4 29100052
    461024 6enj:w (3.7) BS04 rna ? GO:0003746 ... P0A6N4 29100052
    461025 6enk:A (1.96) BS01 BJ5 ? GO:0030288 ... Q9L074 29685972
    461026 6enl:A (2.2) BS01 PGA 4.2.1.11 GO:0000015 ... P00924 2007121
    461027 6enl:A (2.2) BS02 ZN 4.2.1.11 GO:0000015 ... P00924 2007121
    461028 6enm:A (1.59) BS01 LPW 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=4.8nM
    461029 6enm:A (1.59) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    461030 6enm:A (1.59) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    461031 6enm:A (1.59) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461032 6enm:A (1.59) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461033 6enm:A (1.59) BS06 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461034 6enm:B (1.59) BS01 LPW 3.4.24.65 GO:0004222 ... P39900 29727184 BindingDB: IC50=4.8nM
    461035 6enm:B (1.59) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    461036 6enm:B (1.59) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 29727184
    461037 6enm:B (1.59) BS04 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461038 6enm:B (1.59) BS05 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461039 6enm:B (1.59) BS06 CA 3.4.24.65 GO:0004222 ... P39900 29727184
    461040 6enn:A (1.17) BS01 IAC ? GO:0003677 ... P0A881 N/A
    461041 6enn:B (1.17) BS01 IAC ? GO:0003677 ... P0A881 N/A
    461042 6enn:B (1.17) BS02 IAC ? GO:0003677 ... P0A881 N/A
    461043 6eno:A (1.635) BS01 BJ8 ? GO:0016836 ... Q3AET9 29507223
    461044 6enq:A (2.2) BS01 BJB ? GO:0003677 ... P37231 29446942 BindingDB: EC50=4097nM
    461045 6enu:0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 29100052
    461046 6enu:1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 29100052
    461047 6enu:2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 29100052
    461048 6enu:3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 29100052
    461049 6enu:4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 29100052
    461050 6enu:6 (3.1) BS01 rna ? GO:0002181 ... P0A7M9 29100052
    461051 6enu:7 (3.1) BS01 rna ? GO:0000027 ... P0A7L0 29100052
    461052 6enu:C (3.1) BS01 rna ? GO:0000027 ... P60422 29100052
    461053 6enu:D (3.1) BS01 rna ? GO:0000027 ... P60438 29100052
    461054 6enu:E (3.1) BS01 rna ? GO:0001070 ... P60723 29100052
    461055 6enu:F (3.1) BS01 rna ? GO:0000027 ... P62399 29100052
    461056 6enu:F (3.1) BS02 rna ? GO:0000027 ... P62399 29100052
    461057 6enu:F (3.1) BS03 rna ? GO:0000027 ... P62399 29100052
    461058 6enu:G (3.1) BS01 rna ? GO:0000027 ... P0AG55 29100052
    461059 6enu:H (3.1) BS01 rna ? GO:0002181 ... P0A7R1 29100052
    461060 6enu:J (3.1) BS01 rna ? GO:0002181 ... P0AA10 29100052
    461061 6enu:K (3.1) BS01 rna ? GO:0002181 ... P0ADY3 29100052
    461062 6enu:K (3.1) BS02 rna ? GO:0002181 ... P0ADY3 29100052
    461063 6enu:L (3.1) BS01 rna ? GO:0002181 ... P02413 29100052
    461064 6enu:M (3.1) BS01 rna ? GO:0000027 ... P0ADY7 29100052
    461065 6enu:M (3.1) BS02 rna ? GO:0000027 ... P0ADY7 29100052
    461066 6enu:N (3.1) BS01 rna ? GO:0000027 ... P0AG44 29100052
    461067 6enu:O (3.1) BS01 rna ? GO:0002181 ... P0C018 29100052
    461068 6enu:O (3.1) BS02 rna ? GO:0002181 ... P0C018 29100052
    461069 6enu:P (3.1) BS01 rna ? GO:0000027 ... P0A7K6 29100052
    461070 6enu:P (3.1) BS02 rna ? GO:0000027 ... P0A7K6 29100052
    461071 6enu:Q (3.1) BS01 rna ? GO:0000027 ... P0A7L3 29100052
    461072 6enu:R (3.1) BS01 rna ? GO:0002181 ... P0AG48 29100052
    461073 6enu:S (3.1) BS01 rna ? GO:0002181 ... P61175 29100052
    461074 6enu:T (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 29100052
    461075 6enu:U (3.1) BS01 rna ? GO:0000027 ... P60624 29100052
    461076 6enu:V (3.1) BS01 rna ? GO:0000027 ... P68919 29100052
    461077 6enu:W (3.1) BS01 rna ? GO:0000027 ... P0A7L8 29100052
    461078 6enu:W (3.1) BS02 rna ? GO:0000027 ... P0A7L8 29100052
    461079 6enu:X (3.1) BS01 rna ? GO:0000027 ... P0A7M2 29100052
    461080 6enu:Y (3.1) BS01 rna ? GO:0000027 ... P0A7M6 29100052
    461081 6enu:Z (3.1) BS01 rna ? GO:0000027 ... P0AG51 29100052
    461082 6enu:Z (3.1) BS02 rna ? GO:0000027 ... P0AG51 29100052
    461083 6enu:b (3.1) BS01 rna ? GO:0000028 ... P0A7V0 29100052
    461084 6enu:c (3.1) BS01 rna ? GO:0003676 ... P0A7V3 29100052
    461085 6enu:d (3.1) BS01 rna ? GO:0000028 ... P0A7V8 29100052
    461086 6enu:e (3.1) BS01 rna ? GO:0000028 ... P0A7W1 29100052
    461087 6enu:f (3.1) BS01 rna ? GO:0003735 ... P02358 29100052
    461088 6enu:g (3.1) BS01 rna ? GO:0003723 ... P02359 29100052
    461089 6enu:h (3.1) BS01 rna ? GO:0000028 ... P0A7W7 29100052
    461090 6enu:i (3.1) BS01 rna ? GO:0000049 ... P0A7X3 29100052
    461091 6enu:j (3.1) BS01 rna ? GO:0000049 ... P0A7R5 29100052
    461092 6enu:k (3.1) BS01 rna ? GO:0002181 ... P0A7R9 29100052
    461093 6enu:l (3.1) BS01 rna ? GO:0000049 ... P0A7S3 29100052
    461094 6enu:m (3.1) BS01 rna ? GO:0000049 ... P0A7S9 29100052
    461095 6enu:n (3.1) BS01 rna ? GO:0003735 ... P0AG59 29100052
    461096 6enu:o (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 29100052
    461097 6enu:o (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 29100052
    461098 6enu:p (3.1) BS01 rna ? GO:0000028 ... P0A7T3 29100052
    461099 6enu:q (3.1) BS01 rna ? GO:0000028 ... P0AG63 29100052
    461100 6enu:r (3.1) BS01 rna ? GO:0003735 ... P0A7T7 29100052
    461101 6enu:s (3.1) BS01 rna ? GO:0003723 ... P0A7U3 29100052
    461102 6enu:t (3.1) BS01 rna ? GO:0000028 ... P0A7U7 29100052
    461103 6enu:u (3.1) BS01 rna ? GO:0000028 ... P68679 29100052
    461104 6enu:w (3.1) BS01 rna ? GO:0003746 ... P0A6N4 29100052
    461105 6enu:w (3.1) BS02 rna ? GO:0003746 ... P0A6N4 29100052
    461106 6enu:w (3.1) BS03 rna ? GO:0003746 ... P0A6N4 29100052
    461107 6enu:w (3.1) BS04 rna ? GO:0003746 ... P0A6N4 29100052
    461108 6env:A (1.82) BS01 AU ? GO:0005506 ... P02791 29072740
    461109 6env:A (1.82) BS02 AU ? GO:0005506 ... P02791 29072740
    461110 6enw:A (2.6) BS01 AU ? GO:0005506 ... P02791 29072740
    461111 6enx:A (1.95) BS01 ZN 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461112 6enx:A (1.95) BS02 BJW 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461113 6eny:G (5.8) BS01 MAN ? GO:0000122 ... P27797 29107940
    461114 6eny:G (5.8) BS02 MAN ? GO:0000122 ... P27797 29107940
    461115 6enz:A (3.0) BS01 PLP 4.1.1.11
    4.1.1.29
    GO:0003674 ... Q80WP8 29372909
    461116 6enz:B (3.0) BS01 PLP 4.1.1.11
    4.1.1.29
    GO:0003674 ... Q80WP8 29372909
    461117 6enz:B (3.0) BS02 PLP 4.1.1.11
    4.1.1.29
    GO:0003674 ... Q80WP8 29372909
    461118 6eo0:A (2.4) BS01 ZN 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461119 6eo0:A (2.4) BS02 BV8 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461120 6eo0:A (2.4) BS03 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461121 6eo0:A (2.4) BS04 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461122 6eo0:B (2.4) BS01 ZN 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461123 6eo0:B (2.4) BS02 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461124 6eo0:B (2.4) BS03 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461125 6eo0:C (2.4) BS01 BV8 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461126 6eo0:C (2.4) BS02 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461127 6eo0:C (2.4) BS03 ZN 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461128 6eo0:C (2.4) BS04 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461129 6eo0:D (2.4) BS01 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461130 6eo0:D (2.4) BS02 ZN 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461131 6eo0:D (2.4) BS03 BVT 2.3.1.- GO:0036054 ... Q6DHI5 29044784
    461132 6eo4:A (2.9) BS01 FAD ? GO:0000166 ... A0A2K1JP57 29633551
    461133 6eo4:B (2.9) BS01 FAD ? GO:0000166 ... A0A2K1JP57 29633551
    461134 6eo5:A (2.6) BS01 FAD ? GO:0000166 ... A0A2K1JP57 29633551
    461135 6eo5:B (2.6) BS01 FAD ? GO:0000166 ... A0A2K1JP57 29633551
    461136 6eo6:H (1.69) BS01 dna 3.4.21.5 GO:0004252 ... P00734 29684204
    461137 6eo6:H (1.69) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 29684204
    461138 6eo6:H (1.69) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 29684204
    461139 6eo7:H (2.24) BS01 dna 3.4.21.5 GO:0004252 ... P00734 29684204
    461140 6eo7:H (2.24) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 29684204
    461141 6eo8:H (1.94) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 25268757
    461142 6eo8:H (1.94) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 25268757
    461143 6eo8:H (1.94) BS03 2FN 3.4.21.5 GO:0004252 ... P00734 25268757 MOAD: Ki=100nM
    461144 6eo9:H (1.84) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 25268757
    461145 6eo9:H (1.84) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 25268757
    461146 6eo9:H (1.84) BS03 2OJ 3.4.21.5 GO:0004252 ... P00734 25268757 MOAD: Ki=160nM
    461147 6eoa:A (2.18) BS01 FMN ? GO:0000166 ... J9VGI2 30536975
    461148 6eod:A (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461149 6eod:B (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461150 6eod:C (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461151 6eod:D (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461152 6eod:G (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461153 6eod:H (2.2) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461154 6eoe:A (1.71) BS01 ADP 3.6.4.10 GO:0005524 ... G3I8R9 29064368
    461155 6eof:A (1.59) BS01 ADP 3.6.4.10 GO:0005524 ... G3I8R9 29064368
    461156 6eog:A (1.2) BS01 BKK ? GO:0030246 ... P17931 29194992 MOAD: Kd=1.6uM
    461157 6eoh:A (1.85) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461158 6eoh:A (1.85) BS02 NAP ? GO:0000166 ... Q0CCT3 N/A
    461159 6eoh:A (1.85) BS03 BKQ ? GO:0000166 ... Q0CCT3 N/A
    461160 6eoh:B (1.85) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461161 6eoh:B (1.85) BS02 NAP ? GO:0000166 ... Q0CCT3 N/A
    461162 6eoh:B (1.85) BS03 BKQ ? GO:0000166 ... Q0CCT3 N/A
    461163 6eoi:A (1.76) BS01 MG ? GO:0000166 ... Q0CCT3 N/A
    461164 6eoi:A (1.76) BS02 NAP ? GO:0000166 ... Q0CCT3 N/A
    461165 6eoi:A (1.76) BS03 BKN ? GO:0000166 ... Q0CCT3 N/A
    461166 6eoi:A (1.76) BS04 NAP ? GO:0000166 ... Q0CCT3 N/A
    461167 6eoi:A (1.76) BS05 BKN ? GO:0000166 ... Q0CCT3 N/A
    461168 6eoi:B (1.76) BS01 NAP ? GO:0000166 ... Q0CCT3 N/A
    461169 6eoi:B (1.76) BS02 BKN ? GO:0000166 ... Q0CCT3 N/A
    461170 6eoi:B (1.76) BS03 MG ? GO:0000166 ... Q0CCT3 N/A
    461171 6eoi:B (1.76) BS04 NAP ? GO:0000166 ... Q0CCT3 N/A
    461172 6eoi:B (1.76) BS05 BKN ? GO:0000166 ... Q0CCT3 N/A
    461173 6eoj:B (3.55) BS01 ZN ? GO:0003723 ... Q06102 29074584
    461174 6eoj:B (3.55) BS02 ZN ? GO:0003723 ... Q06102 29074584
    461175 6eok:B (2.5) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 30462348
    461176 6eok:C (2.5) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 30462348
    461177 6eok:D (2.5) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 30462348
    461178 6eol:A (1.5) BS01 BKH ? GO:0030246 ... P17931 29194992 MOAD: Kd=0.037uM
    461179 6eom:A (2.103) BS01 ZN ? GO:0005737 ... H1XW48 29420664
    461180 6eom:A (2.103) BS02 LYS ? GO:0005737 ... H1XW48 29420664
    461181 6eon:A (1.75) BS01 GLA ? GO:0004553 ... Q8AB22 30349080
    461182 6eon:A (1.75) BS02 CA ? GO:0004553 ... Q8AB22 30349080
    461183 6eop:A (2.4) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461184 6eop:A (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461185 6eop:A (2.4) BS03 F15 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461186 6eop:B (2.4) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461187 6eop:B (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461188 6eop:B (2.4) BS03 F15 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461189 6eop:C (2.4) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461190 6eop:C (2.4) BS02 CA 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461191 6eop:C (2.4) BS03 F15 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461192 6eor:A (2.9) BS01 9XH 3.4.14.5 GO:0004177 ... Q86TI2 29382749 BindingDB: IC50=53nM
    461193 6eor:B (2.9) BS01 9XH 3.4.14.5 GO:0004177 ... Q86TI2 29382749 BindingDB: IC50=53nM
    461194 6eor:C (2.9) BS01 9XH 3.4.14.5 GO:0004177 ... Q86TI2 29382749 BindingDB: IC50=53nM
    461195 6eor:D (2.9) BS01 9XH 3.4.14.5 GO:0004177 ... Q86TI2 29382749 BindingDB: IC50=53nM
    461196 6eot:A (3.5) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461197 6eot:B (3.5) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461198 6eot:D (3.5) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461199 6eot:G (3.5) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749
    461200 6eot:I (3.5) BS01 peptide 3.4.14.5 GO:0004177 ... Q6V1X1 29382749

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).