SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    462001 6etd:A (1.723) BS01 AMP 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q39054 29717023
    462002 6ete:A (1.468) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    462003 6ete:A (1.468) BS02 BWK 1.14.11.66 N/A Q6B0I6 N/A
    462004 6etf:A (1.781) BS01 AMP 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q39054 29717023
    462005 6etf:A (1.781) BS02 MOO 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q39054 29717023
    462006 6etg:A (1.279) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462007 6etg:A (1.279) BS02 BWT 1.14.11.66 N/A Q6B0I6 31475772
    462008 6eth:A (1.64) BS01 AMP 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q39054 29717023
    462009 6eth:A (1.64) BS02 WO4 2.10.1.1
    2.7.7.75
    GO:0006777 ... Q39054 29717023
    462010 6eti:A (3.1) BS01 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    462011 6eti:A (3.1) BS02 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    462012 6eti:B (3.1) BS01 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    462013 6eti:B (3.1) BS02 BWQ 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    462014 6etj:A (2.51) BS01 F6P 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 30250201
    462015 6etj:A (2.51) BS02 BWW 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 30250201
    462016 6etj:A (2.51) BS03 ADP 2.7.1.105
    3.1.3.46
    GO:0003824 ... Q16875 30250201
    462017 6ets:A (1.333) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462018 6ets:A (1.333) BS02 I1L 1.14.11.66 N/A Q6B0I6 31475772
    462019 6ett:A (1.257) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462020 6ett:A (1.257) BS02 BXH 1.14.11.66 N/A Q6B0I6 31475772
    462021 6etu:A (1.33) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462022 6etu:A (1.33) BS02 BWZ 1.14.11.66 N/A Q6B0I6 31475772
    462023 6etv:A (1.18) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462024 6etv:A (1.18) BS02 BXE 1.14.11.66 N/A Q6B0I6 31475772
    462025 6etw:A (1.35) BS01 ZN 1.14.11.66 N/A Q6B0I6 31475772
    462026 6etw:A (1.35) BS02 BX5 1.14.11.66 N/A Q6B0I6 31475772
    462027 6ety:A (1.68) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    462028 6ety:A (1.68) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    462029 6ety:A (1.68) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    462030 6ety:A (1.68) BS04 BXK 3.4.17.21 GO:0004180 ... Q04609 30552009 BindingDB: IC50=8.9nM
    462031 6eu0:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... P04051 29345637
    462032 6eu0:A (4.0) BS02 dna 2.7.7.6 GO:0000428 ... P04051 29345637
    462033 6eu0:A (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    462034 6eu0:B (4.0) BS01 dna 2.7.7.6 GO:0000428 ... P22276 29345637
    462035 6eu0:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... P22276 29345637
    462036 6eu0:I (4.0) BS01 ZN ? GO:0000428 ... Q04307 29345637
    462037 6eu0:J (4.0) BS01 ZN ? GO:0000428 ... P22139 29345637
    462038 6eu0:L (4.0) BS01 ZN ? GO:0000428 ... P40422 29345637
    462039 6eu0:O (4.0) BS01 dna ? GO:0000428 ... P32349 29345637
    462040 6eu0:P (4.0) BS01 dna ? GO:0000428 ... P32910 29345637
    462041 6eu0:V (4.0) BS01 dna ? GO:0000126 ... P46678 29345637
    462042 6eu0:V (4.0) BS02 dna ? GO:0000126 ... P46678 29345637
    462043 6eu0:Y (4.0) BS01 dna ? GO:0000126 ... P13393 29345637
    462044 6eu0:Y (4.0) BS02 dna ? GO:0000126 ... P13393 29345637
    462045 6eu0:Z (4.0) BS01 dna ? GO:0000126 ... P29056 29345637
    462046 6eu0:Z (4.0) BS02 dna ? GO:0000126 ... P29056 29345637
    462047 6eu1:A (3.4) BS01 dna 2.7.7.6 GO:0000428 ... P04051 29345637
    462048 6eu1:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04051 29345637
    462049 6eu1:A (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    462050 6eu1:A (3.4) BS04 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    462051 6eu1:B (3.4) BS01 dna 2.7.7.6 GO:0000428 ... P22276 29345637
    462052 6eu1:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P22276 29345637
    462053 6eu1:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 29345637
    462054 6eu1:E (3.4) BS01 dna ? GO:0000428 ... P20434 29345637
    462055 6eu1:I (3.4) BS01 ZN ? GO:0000428 ... Q04307 29345637
    462056 6eu1:J (3.4) BS01 ZN ? GO:0000428 ... P22139 29345637
    462057 6eu1:L (3.4) BS01 ZN ? GO:0000428 ... P40422 29345637
    462058 6eu1:O (3.4) BS01 dna ? GO:0000428 ... P32349 29345637
    462059 6eu2:A (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    462060 6eu2:A (3.4) BS02 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    462061 6eu2:I (3.4) BS01 ZN ? GO:0000428 ... Q04307 29345637
    462062 6eu2:L (3.4) BS01 ZN ? GO:0000428 ... P40422 29345637
    462063 6eu3:A (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    462064 6eu3:A (3.3) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 29345637
    462065 6eu3:A (3.3) BS03 MG 2.7.7.6 GO:0000428 ... P04051 29345637
    462066 6eu3:I (3.3) BS01 ZN ? GO:0000428 ... Q04307 29345637
    462067 6eu3:J (3.3) BS01 ZN ? GO:0000428 ... P22139 29345637
    462068 6eu3:L (3.3) BS01 ZN ? GO:0000428 ... P40422 29345637
    462069 6eu5:A (1.49608) BS01 MYA 2.3.1.97 GO:0004379 ... Q4Q5S8 31423787
    462070 6eu5:A (1.49608) BS02 BXN 2.3.1.97 GO:0004379 ... Q4Q5S8 31423787 MOAD: Ki=2nM
    BindingDB: Ki=1.3nM
    462071 6eu6:A (1.98) BS01 ZDM 2.7.13.3 GO:0005886 ... Q1Q357 29323112
    462072 6eu6:A (1.98) BS02 NH4 2.7.13.3 GO:0005886 ... Q1Q357 29323112
    462073 6eu6:A (1.98) BS03 NH4 2.7.13.3 GO:0005886 ... Q1Q357 29323112
    462074 6eu9:B (2.69) BS01 REA ? GO:0000978 ... A0A384E144 29492455
    462075 6eu9:D (2.69) BS01 REA ? GO:0000978 ... A0A384E144 29492455
    462076 6euc:A (2.21999) BS01 RM0 3.1.1.7 GO:0001507 ... P04058 29672968
    462077 6euf:A (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    462078 6euf:A (2.2) BS02 BDP ? GO:0004553 ... Q8AB46 30349080
    462079 6euf:B (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    462080 6euf:C (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    462081 6euf:D (2.2) BS01 GAL ? GO:0004553 ... Q8AB46 30349080
    462082 6euf:D (2.2) BS02 BDP ? GO:0004553 ... Q8AB46 30349080
    462083 6eug:A (1.61) BS01 GIM 3.2.1.73 GO:0004553 ... Q8A1H8 30349080
    462084 6euh:A (2.0) BS01 DGJ ? GO:0004553 ... Q8A1H8 30349080
    462085 6euh:A (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    462086 6euh:B (2.0) BS01 DGJ ? GO:0004553 ... Q8A1H8 30349080
    462087 6euh:B (2.0) BS02 CA ? GO:0004553 ... Q8A1H8 30349080
    462088 6euh:C (2.0) BS01 CA ? GO:0004553 ... Q8A1H8 30349080
    462089 6eui:A (1.76) BS01 GAL ? GO:0004553 ... Q8A1H8 30349080
    462090 6eui:A (1.76) BS02 GAL ? GO:0004553 ... Q8A1H8 30349080
    462091 6eui:A (1.76) BS03 CA ? GO:0004553 ... Q8A1H8 30349080
    462092 6eum:A (1.18) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    462093 6eum:A (1.18) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 29655609
    462094 6eum:A (1.18) BS03 BY5 3.5.2.6 GO:0008270 ... P04190 29655609 MOAD: ic50=0.3uM
    BindingDB: IC50=300nM
    462095 6euo:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462096 6euo:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462097 6euo:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462098 6euo:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462099 6euq:A (2.2) BS01 DXC ? GO:0005886 ... P0AEY8 29530612
    462100 6eur:A (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462101 6eur:A (2.3) BS02 AKG 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462102 6eur:B (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462103 6eur:B (2.3) BS02 AKG 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462104 6eur:C (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462105 6eur:C (2.3) BS02 AKG 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462106 6eur:D (2.3) BS01 FE 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462107 6eur:D (2.3) BS02 AKG 1.14.11.- GO:0016706 ... J3BZS6 30410048
    462108 6eut:A (1.9) BS01 BY8 ? GO:0003677 ... P22262 29667825
    462109 6eut:B (1.9) BS01 BY8 ? GO:0003677 ... P22262 29667825
    462110 6euu:B (2.6) BS01 K29 ? GO:0003677 ... P22262 29667825
    462111 6euv:A (2.7) BS01 21G ? N/A P31345 29202182
    462112 6euv:A (2.7) BS02 21G ? N/A P31345 29202182
    462113 6euv:C (2.7) BS01 21G ? N/A P31345 29202182
    462114 6euv:C (2.7) BS02 21G ? N/A P31345 29202182
    462115 6euv:F (2.7) BS01 21G ? N/A P31345 29202182
    462116 6euv:F (2.7) BS02 21G ? N/A P31345 29202182
    462117 6euv:I (2.7) BS01 21G ? N/A P31345 29202182
    462118 6euv:I (2.7) BS02 21G ? N/A P31345 29202182
    462119 6euw:A (1.0) BS01 BYB ? N/A Q2LG68 29202182 MOAD: Kd=0.017uM
    462120 6eux:A (2.05) BS01 BYB ? N/A Q5V8X3 29202182
    462121 6euy:A (3.0) BS01 BYB ? N/A P31345 29202182
    462122 6euy:B (3.0) BS01 BYB ? N/A P31345 29202182
    462123 6euy:C (3.0) BS01 BYB ? N/A P31345 29202182
    462124 6euz:A (1.95) BS01 C8Q ? GO:0003677 ... P22262 29667825 BindingDB: IC50=65600nM
    462125 6euz:B (1.95) BS01 C8Q ? GO:0003677 ... P22262 29667825 MOAD: ic50=65.6uM
    BindingDB: IC50=65600nM
    462126 6ev0:A (2.3) BS01 BYK ? GO:0003677 ... P22262 29667825 MOAD: ic50=1.8uM
    462127 6ev0:A (2.3) BS02 C8N ? GO:0003677 ... P22262 29667825
    462128 6ev0:B (2.3) BS01 BYK ? GO:0003677 ... P22262 29667825 MOAD: ic50=1.8uM
    462129 6ev0:B (2.3) BS02 C8N ? GO:0003677 ... P22262 29667825
    462130 6ev2:A (2.403) BS01 BGC N/A N/A N/A 30209318
    462131 6ev2:B (2.403) BS01 BGC N/A N/A N/A 30209318
    462132 6ev2:C (2.403) BS01 BGC N/A N/A N/A 30209318
    462133 6ev2:D (2.403) BS01 BGC N/A N/A N/A 30209318
    462134 6ev3:A (1.3) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462135 6ev3:A (1.3) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462136 6ev3:A (1.3) BS03 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462137 6ev4:A (1.14) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462138 6ev4:A (1.14) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462139 6ev5:A (1.28) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462140 6ev5:A (1.28) BS02 BYN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462141 6ev6:A (1.1) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462142 6ev6:A (1.1) BS02 FZZ 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462143 6ev6:A (1.1) BS03 BYN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462144 6ev7:A (1.06) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462145 6ev7:A (1.06) BS02 4LU 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462146 6ev8:A (1.03) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462147 6ev8:A (1.03) BS02 BYN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462148 6ev9:A (1.64) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462149 6ev9:A (1.64) BS02 BYN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462150 6eva:A (1.64) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462151 6eva:A (1.64) BS02 4MJ 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462152 6evb:A (1.13) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462153 6evb:A (1.13) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462154 6evc:A (1.18) BS01 4LU 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462155 6evc:A (1.18) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462156 6evc:A (1.18) BS03 F5C 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462157 6evd:A (1.19) BS01 MN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462158 6evd:A (1.19) BS02 BYN 4.1.1.102 GO:0005737 ... A2QHE5 29259125
    462159 6eve:A (2.05) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462160 6eve:A (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462161 6eve:B (2.05) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462162 6eve:B (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462163 6eve:C (2.05) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462164 6eve:C (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462165 6eve:D (2.05) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462166 6eve:D (2.05) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462167 6eve:D (2.05) BS03 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462168 6evf:A (2.06) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462169 6evf:A (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462170 6evf:B (2.06) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462171 6evf:B (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462172 6evf:C (2.06) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462173 6evf:C (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462174 6evf:D (2.06) BS01 4LU 4.1.1.102 GO:0005737 ... Q03034 29259125
    462175 6evf:D (2.06) BS02 MN 4.1.1.102 GO:0005737 ... Q03034 29259125
    462176 6evg:A (1.1) BS01 CU 1.16.3.4 GO:0005507 ... A6X5N0 29575798
    462177 6evj:A (3.9) BS01 rna ? GO:0003723 ... H6QM92 29202182
    462178 6evj:A (3.9) BS02 rna ? GO:0003723 ... H6QM92 29202182
    462179 6evj:B (3.9) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462180 6evj:B (3.9) BS02 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462181 6evj:C (3.9) BS01 rna ? GO:0003723 ... H6QM90 29202182
    462182 6evj:C (3.9) BS02 rna ? GO:0003723 ... H6QM90 29202182
    462183 6evj:D (3.9) BS01 rna ? GO:0003723 ... H6QM92 29202182
    462184 6evj:D (3.9) BS02 rna ? GO:0003723 ... H6QM92 29202182
    462185 6evj:E (3.9) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462186 6evj:E (3.9) BS02 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462187 6evj:F (3.9) BS01 rna ? GO:0003723 ... H6QM90 29202182
    462188 6evj:F (3.9) BS02 rna ? GO:0003723 ... H6QM90 29202182
    462189 6evk:A (2.9) BS01 rna ? GO:0003723 ... H6QM92 29202182
    462190 6evk:A (2.9) BS02 rna ? GO:0003723 ... H6QM92 29202182
    462191 6evk:A (2.9) BS03 PO4 ? GO:0003723 ... H6QM92 29202182
    462192 6evk:A (2.9) BS04 PO4 ? GO:0003723 ... H6QM92 29202182
    462193 6evk:A (2.9) BS05 PO4 ? GO:0003723 ... H6QM92 29202182
    462194 6evk:A (2.9) BS06 PO4 ? GO:0003723 ... H6QM92 29202182
    462195 6evk:B (2.9) BS01 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462196 6evk:B (2.9) BS02 rna 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462197 6evk:B (2.9) BS03 PO4 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462198 6evk:B (2.9) BS04 PO4 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462199 6evk:B (2.9) BS05 PO4 2.7.7.48 GO:0001172 ... H6QM91 29202182
    462200 6evk:B (2.9) BS06 PO4 2.7.7.48 GO:0001172 ... H6QM91 29202182

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).