SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    462401 6exn:C (3.7) BS02 GTP ? GO:0000244 ... P36048 29146871
    462402 6exn:H (3.7) BS01 rna ? GO:0000398 ... P53333 29146871
    462403 6exn:J (3.7) BS01 rna ? GO:0000398 ... Q12417 29146871
    462404 6exn:K (3.7) BS01 rna ? GO:0000350 ... P28004 29146871
    462405 6exn:K (3.7) BS02 rna ? GO:0000350 ... P28004 29146871
    462406 6exn:K (3.7) BS03 rna ? GO:0000350 ... P28004 29146871
    462407 6exn:L (3.7) BS01 rna ? GO:0000282 ... P25337 29146871
    462408 6exn:L (3.7) BS02 rna ? GO:0000282 ... P25337 29146871
    462409 6exn:L (3.7) BS03 ZN ? GO:0000282 ... P25337 29146871
    462410 6exn:L (3.7) BS04 ZN ? GO:0000282 ... P25337 29146871
    462411 6exn:L (3.7) BS05 ZN ? GO:0000282 ... P25337 29146871
    462412 6exn:M (3.7) BS01 rna ? GO:0000387 ... Q12046 29146871
    462413 6exn:M (3.7) BS02 rna ? GO:0000387 ... Q12046 29146871
    462414 6exn:M (3.7) BS03 ZN ? GO:0000387 ... Q12046 29146871
    462415 6exn:N (3.7) BS01 rna ? GO:0000398 ... P38241 29146871
    462416 6exn:N (3.7) BS02 ZN ? GO:0000398 ... P38241 29146871
    462417 6exn:N (3.7) BS03 ZN ? GO:0000398 ... P38241 29146871
    462418 6exn:O (3.7) BS01 rna ? GO:0000350 ... Q03654 29146871
    462419 6exn:O (3.7) BS02 rna ? GO:0000350 ... Q03654 29146871
    462420 6exn:O (3.7) BS03 rna ? GO:0000350 ... Q03654 29146871
    462421 6exn:P (3.7) BS01 rna ? GO:0000398 ... Q03772 29146871
    462422 6exn:P (3.7) BS02 rna ? GO:0000398 ... Q03772 29146871
    462423 6exn:P (3.7) BS03 rna ? GO:0000398 ... Q03772 29146871
    462424 6exn:R (3.7) BS01 rna ? GO:0000398 ... Q03375 29146871
    462425 6exn:R (3.7) BS02 rna ? GO:0000398 ... Q03375 29146871
    462426 6exn:S (3.7) BS01 rna ? GO:0000245 ... Q12309 29146871
    462427 6exn:V (3.7) BS01 rna 3.6.4.13 GO:0000350 ... P24384 29146871
    462428 6exn:W (3.7) BS01 rna ? GO:0000398 ... Q08963 29146871
    462429 6exn:Y (3.7) BS01 rna ? GO:0000398 ... P40567 29146871
    462430 6exn:a (3.7) BS01 rna ? GO:0000350 ... P33411 29146871
    462431 6exn:b (3.7) BS01 rna ? GO:0000243 ... P40018 29146871
    462432 6exn:c (3.7) BS01 IHP ? GO:0000350 ... Q02775 29146871
    462433 6exn:c (3.7) BS02 ZN ? GO:0000350 ... Q02775 29146871
    462434 6exn:d (3.7) BS01 rna ? GO:0000243 ... P43321 29146871
    462435 6exn:e (3.7) BS01 rna ? GO:0000243 ... Q12330 29146871
    462436 6exn:f (3.7) BS01 rna ? GO:0000243 ... P54999 29146871
    462437 6exn:g (3.7) BS01 rna ? GO:0000243 ... P40204 29146871
    462438 6exn:h (3.7) BS01 rna ? GO:0000243 ... Q02260 29146871
    462439 6exn:j (3.7) BS01 rna ? GO:0000243 ... Q06217 29146871
    462440 6exn:k (3.7) BS01 rna ? GO:0000243 ... P40018 29146871
    462441 6exn:l (3.7) BS01 rna ? GO:0000243 ... Q02260 29146871
    462442 6exn:m (3.7) BS01 rna ? GO:0000243 ... Q06217 29146871
    462443 6exn:n (3.7) BS01 rna ? GO:0000243 ... P43321 29146871
    462444 6exn:o (3.7) BS01 rna ? GO:0000348 ... P40968 29146871
    462445 6exn:o (3.7) BS02 rna ? GO:0000348 ... P40968 29146871
    462446 6exn:p (3.7) BS01 rna ? GO:0000243 ... Q12330 29146871
    462447 6exn:q (3.7) BS01 rna ? GO:0000243 ... P54999 29146871
    462448 6exn:r (3.7) BS01 rna ? GO:0000243 ... P40204 29146871
    462449 6exn:y (3.7) BS01 rna ? GO:0000384 ... P53277 29146871
    462450 6exn:y (3.7) BS02 rna ? GO:0000384 ... P53277 29146871
    462451 6exo:A (1.9) BS01 C3E ? GO:0006508 ... Q95PM0 29590750 MOAD: Ki=5.1nM
    462452 6exo:B (1.9) BS01 C3E ? GO:0006508 ... Q95PM0 29590750 MOAD: Ki=5.1nM
    462453 6exq:A (2.5) BS01 C2W ? GO:0006508 ... Q95PM0 29590750 MOAD: Ki=9nM
    462454 6exq:B (2.5) BS01 C2W ? GO:0006508 ... Q95PM0 29590750 MOAD: Ki=9nM
    462455 6exs:A (2.5) BS01 C3H N/A GO:0006857 ... N/A 29966586 MOAD: ic50=362uM
    462456 6exv:A (3.6) BS01 peptide 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462457 6exv:A (3.6) BS02 dna 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462458 6exv:A (3.6) BS03 rna 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462459 6exv:A (3.6) BS04 dna 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462460 6exv:A (3.6) BS05 ZN 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462461 6exv:A (3.6) BS06 ZN 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462462 6exv:A (3.6) BS07 MG 2.7.7.6 GO:0003677 ... I3LJR4 29550768
    462463 6exv:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 29550768
    462464 6exv:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 29550768
    462465 6exv:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 29550768
    462466 6exv:C (3.6) BS01 ZN ? GO:0000428 ... I3LCH3 29550768
    462467 6exv:E (3.6) BS01 dna ? GO:0001054 ... I3LSI7 29550768
    462468 6exv:I (3.6) BS01 ZN ? GO:0000428 ... P60899 29550768
    462469 6exv:I (3.6) BS02 ZN ? GO:0000428 ... P60899 29550768
    462470 6exv:J (3.6) BS01 ZN N/A GO:0003677 ... N/A 29550768
    462471 6exv:L (3.6) BS01 ZN ? GO:0001054 ... A0A4X1TRS6 29550768
    462472 6exw:A (2.2) BS01 ZN 2.3.2.27 N/A Q13490 30055105
    462473 6exw:A (2.2) BS02 C3K 2.3.2.27 N/A Q13490 30055105
    462474 6exw:A (2.2) BS03 C3K 2.3.2.27 N/A Q13490 30055105
    462475 6exw:C (2.2) BS01 C3K 2.3.2.27 N/A Q13490 30055105
    462476 6exw:C (2.2) BS02 ZN 2.3.2.27 N/A Q13490 30055105
    462477 6exw:C (2.2) BS03 C3K 2.3.2.27 N/A Q13490 30055105
    462478 6exy:A (1.1) BS01 GOL ? N/A P17931 29672051
    462479 6ey1:A (1.199) BS01 MN 1.14.11.29 GO:0005506 ... I6QVT6 30519597
    462480 6ey2:A (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    462481 6ey2:A (2.7) BS02 C3T 2.3.2.27 N/A P98170 30055105
    462482 6ey2:B (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    462483 6ey2:B (2.7) BS02 C3T 2.3.2.27 N/A P98170 30055105
    462484 6ey2:B (2.7) BS03 C3T 2.3.2.27 N/A P98170 30055105
    462485 6ey2:C (2.7) BS01 C3T 2.3.2.27 N/A P98170 30055105
    462486 6ey2:C (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    462487 6ey2:C (2.7) BS03 C3T 2.3.2.27 N/A P98170 30055105
    462488 6ey2:D (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    462489 6ey2:D (2.7) BS02 C3T 2.3.2.27 N/A P98170 30055105
    462490 6ey2:D (2.7) BS03 C3T 2.3.2.27 N/A P98170 30055105
    462491 6ey2:E (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    462492 6ey2:E (2.7) BS02 C3T 2.3.2.27 N/A P98170 30055105
    462493 6ey2:F (2.7) BS01 ZN 2.3.2.27 N/A P98170 30055105
    462494 6ey2:F (2.7) BS02 C3T 2.3.2.27 N/A P98170 30055105
    462495 6ey2:G (2.7) BS01 C3T 2.3.2.27 N/A P98170 30055105
    462496 6ey2:G (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    462497 6ey2:G (2.7) BS03 C3T 2.3.2.27 N/A P98170 30055105
    462498 6ey2:H (2.7) BS01 C3T 2.3.2.27 N/A P98170 30055105
    462499 6ey2:H (2.7) BS02 ZN 2.3.2.27 N/A P98170 30055105
    462500 6ey2:H (2.7) BS03 C3T 2.3.2.27 N/A P98170 30055105
    462501 6ey7:A (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462502 6ey7:A (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462503 6ey7:A (2.9) BS03 C3W 3.1.-.- GO:0051276 ... P16732 31458978
    462504 6ey7:B (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462505 6ey7:B (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462506 6ey7:B (2.9) BS03 C3W 3.1.-.- GO:0051276 ... P16732 31458978
    462507 6ey7:C (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462508 6ey7:C (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462509 6ey7:C (2.9) BS03 C3W 3.1.-.- GO:0051276 ... P16732 31458978
    462510 6ey7:D (2.9) BS01 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462511 6ey7:D (2.9) BS02 MN 3.1.-.- GO:0051276 ... P16732 31458978
    462512 6ey7:D (2.9) BS03 C3W 3.1.-.- GO:0051276 ... P16732 31458978
    462513 6ey8:A (2.16) BS01 C4T 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=1.55uM
    462514 6ey9:A (2.0) BS01 C4N 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=1.24uM
    462515 6eya:A (2.1) BS01 C4K 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=33nM
    462516 6eyb:A (1.9) BS01 C3Z 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=4.22uM
    462517 6eyc:2 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 29872003
    462518 6eyc:2 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 29872003
    462519 6eyc:3 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 29872003
    462520 6eyc:3 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29872003
    462521 6eyc:4 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 29872003
    462522 6eyc:5 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 29872003
    462523 6eyc:5 (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 29872003
    462524 6eyc:5 (3.8) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 29872003
    462525 6eyc:6 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 29872003
    462526 6eyc:7 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 29872003
    462527 6eyc:7 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 29872003
    462528 6eyc:7 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 29872003
    462529 6eyd:D (4.22) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    462530 6eyd:D (4.22) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 30478083
    462531 6eyd:D (4.22) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 30478083
    462532 6eye:A (1.7) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462533 6eye:A (1.7) BS02 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462534 6eye:A (1.7) BS03 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462535 6eye:A (1.7) BS04 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462536 6eye:A (1.7) BS05 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462537 6eye:A (1.7) BS06 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462538 6eye:A (1.7) BS07 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462539 6eye:A (1.7) BS08 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462540 6eye:A (1.7) BS09 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462541 6eye:A (1.7) BS10 KR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    462542 6eyf:A (2.6) BS01 BY2 3.1.1.8 GO:0001540 ... P06276 N/A
    462543 6eyh:A (1.6) BS01 DQY ? GO:0022857 ... Q45462 N/A
    462544 6eyi:A (2.04) BS01 C4Z ? GO:0007155 ... P16581 N/A
    462545 6eyi:A (2.04) BS02 CA ? GO:0007155 ... P16581 N/A
    462546 6eyj:A (2.2) BS01 C5H ? GO:0007155 ... P16581 39072885
    462547 6eyj:A (2.2) BS02 CA ? GO:0007155 ... P16581 39072885
    462548 6eyj:B (2.2) BS01 C5H ? GO:0007155 ... P16581 39072885
    462549 6eyj:B (2.2) BS02 CA ? GO:0007155 ... P16581 39072885
    462550 6eyk:A (2.21) BS01 C5K ? GO:0007155 ... P16581 39072885
    462551 6eyk:A (2.21) BS02 CA ? GO:0007155 ... P16581 39072885
    462552 6eyl:A (1.5) BS01 152 ? GO:0022857 ... Q45462 N/A
    462553 6eyl:B (1.5) BS01 152 ? GO:0022857 ... Q45462 N/A
    462554 6eym:A (1.1) BS01 BGC ? N/A P17931 29672051
    462555 6eym:A (1.1) BS02 GAL ? N/A P17931 29672051
    462556 6eyo:A (3.7) BS01 MAN ? N/A P01854 30069035
    462557 6eyt:A (2.21) BS01 MN ? GO:0000166 ... A0A0H3NMP8 29449376
    462558 6eyt:A (2.21) BS02 UDP ? GO:0000166 ... A0A0H3NMP8 29449376
    462559 6eyt:B (2.21) BS01 MN ? GO:0000166 ... A0A0H3NMP8 29449376
    462560 6eyt:B (2.21) BS02 UDP ? GO:0000166 ... A0A0H3NMP8 29449376
    462561 6eyu:A (2.5) BS01 RET ? GO:0016020 ... G0QG75 28948217
    462562 6eyu:A (2.5) BS02 MUN ? GO:0016020 ... G0QG75 28948217
    462563 6eyu:A (2.5) BS03 MUN ? GO:0016020 ... G0QG75 28948217
    462564 6eyu:A (2.5) BS04 MUN ? GO:0016020 ... G0QG75 28948217
    462565 6eyu:A (2.5) BS05 MUN ? GO:0016020 ... G0QG75 28948217
    462566 6eyu:A (2.5) BS06 MUN ? GO:0016020 ... G0QG75 28948217
    462567 6eyu:A (2.5) BS07 MUN ? GO:0016020 ... G0QG75 28948217
    462568 6eyu:A (2.5) BS08 MUN ? GO:0016020 ... G0QG75 28948217
    462569 6eyu:B (2.5) BS01 MUN ? GO:0016020 ... G0QG75 28948217
    462570 6eyu:B (2.5) BS02 RET ? GO:0016020 ... G0QG75 28948217
    462571 6eyu:B (2.5) BS03 MUN ? GO:0016020 ... G0QG75 28948217
    462572 6eyu:B (2.5) BS04 MUN ? GO:0016020 ... G0QG75 28948217
    462573 6eyu:B (2.5) BS05 MUN ? GO:0016020 ... G0QG75 28948217
    462574 6eyu:C (2.5) BS01 MUN ? GO:0016020 ... G0QG75 28948217
    462575 6eyu:C (2.5) BS02 MUN ? GO:0016020 ... G0QG75 28948217
    462576 6eyu:C (2.5) BS03 RET ? GO:0016020 ... G0QG75 28948217
    462577 6eyu:C (2.5) BS04 MUN ? GO:0016020 ... G0QG75 28948217
    462578 6eyu:C (2.5) BS05 MUN ? GO:0016020 ... G0QG75 28948217
    462579 6eyv:A (2.704) BS01 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    462580 6eyv:A (2.704) BS02 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    462581 6eyv:A (2.704) BS03 TYR ? GO:0046872 ... A0A0H2ZBG1 30030378
    462582 6eyv:B (2.704) BS01 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    462583 6eyv:B (2.704) BS02 ZN ? GO:0046872 ... A0A0H2ZBG1 30030378
    462584 6eyv:B (2.704) BS03 TYR ? GO:0046872 ... A0A0H2ZBG1 30030378
    462585 6eyz:A (2.2) BS01 C5W 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 29232121
    462586 6ez6:A (2.04) BS01 C5Z 2.7.1.137
    2.7.1.153
    GO:0016301 ... O35904 29232121
    462587 6ez9:A (1.61) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    462588 6ez9:A (1.61) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    462589 6ez9:A (1.61) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    462590 6ez9:A (1.61) BS04 C68 3.4.17.21 GO:0004180 ... Q04609 30552009 BindingDB: IC50=17nM
    462591 6eza:A (2.0) BS01 FMN 1.3.1.91 GO:0008033 ... Q9NX74 30149704
    462592 6eza:B (2.0) BS01 FMN 1.3.1.91 GO:0008033 ... Q9NX74 30149704
    462593 6ezb:A (2.25) BS01 FMN 1.3.1.91 GO:0008033 ... Q9NX74 30149704
    462594 6ezc:A (2.0) BS01 FMN 1.3.1.91 GO:0008033 ... Q9NX74 30149704
    462595 6eze:A (2.47) BS01 GNP ? GO:0003723 ... P0CE48 30107565
    462596 6eze:B (2.47) BS01 GNP ? GO:0003723 ... P0CE48 30107565
    462597 6ezf:A (1.5) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29559702
    462598 6ezf:A (1.5) BS02 C6Z 3.1.4.17 GO:0004114 ... O00408 29559702
    462599 6ezg:A (2.2) BS01 C6K 3.1.1.7 GO:0001507 ... P04058 30447434
    462600 6ezg:B (2.2) BS01 C6K 3.1.1.7 GO:0001507 ... P04058 30447434

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).