SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    462801 6ezm:T (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462802 6ezm:U (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462803 6ezm:U (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462804 6ezm:U (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462805 6ezm:U (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462806 6ezm:U (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462807 6ezm:V (3.2) BS01 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462808 6ezm:V (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462809 6ezm:V (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462810 6ezm:V (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462811 6ezm:V (3.2) BS05 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462812 6ezm:W (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462813 6ezm:W (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462814 6ezm:W (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462815 6ezm:W (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462816 6ezm:W (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462817 6ezm:X (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462818 6ezm:X (3.2) BS02 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462819 6ezm:X (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462820 6ezm:X (3.2) BS04 MN 4.2.1.19 GO:0000105 ... P06633 29434040
    462821 6ezm:X (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    462822 6ezn:A (3.3) BS01 CPL 2.4.99.18 GO:0006486 ... P41543 29301962
    462823 6ezn:B (3.3) BS01 CPL 2.4.99.18 GO:0003674 ... P46964 29301962
    462824 6ezn:D (3.3) BS01 CPL 2.4.99.18 GO:0005515 ... Q99380 29301962
    462825 6ezn:E (3.3) BS01 CPL 2.4.99.18 GO:0005198 ... Q92316 29301962
    462826 6ezn:E (3.3) BS02 CPL 2.4.99.18 GO:0005198 ... Q92316 29301962
    462827 6ezn:F (3.3) BS01 CPL 2.4.99.18 GO:0004576 ... P39007 29301962
    462828 6ezn:F (3.3) BS02 CPL 2.4.99.18 GO:0004576 ... P39007 29301962
    462829 6ezn:G (3.3) BS01 MAN 2.4.99.18 GO:0005789 ... P33767 29301962
    462830 6ezn:H (3.3) BS01 CPL 2.4.99.18 GO:0008250 ... Q02795 29301962
    462831 6ezo:C (4.1) BS01 C7B ? GO:0001541 ... P49770 29599245
    462832 6ezo:D (4.1) BS01 C7B ? GO:0001541 ... P49770 29599245
    462833 6ezp:A (1.37) BS01 C3E 3.4.22.15 GO:0006508 ... P07711 29590750 BindingDB: IC50=13.8nM
    462834 6ezq:A (2.39) BS01 C7K ? GO:0003677 ... P02768 29193545 MOAD: Kd=14uM
    462835 6ezq:A (2.39) BS02 C7K ? GO:0003677 ... P02768 29193545 MOAD: Kd=14uM
    462836 6ezu:A (2.04) BS01 ZN N/A GO:0004114 ... N/A N/A
    462837 6ezu:A (2.04) BS02 CMP N/A GO:0004114 ... N/A N/A
    462838 6ezu:B (2.04) BS01 ZN N/A GO:0004114 ... N/A N/A
    462839 6ezu:B (2.04) BS02 AMP N/A GO:0004114 ... N/A N/A
    462840 6ezx:A (2.34) BS01 C7Q 3.4.22.15 GO:0006508 ... P07711 29590750
    462841 6ezx:B (2.34) BS01 C7Q 3.4.22.15 GO:0006508 ... P07711 29590750
    462842 6ezy:B (2.35) BS01 GSH 2.5.1.18 GO:0000325 ... O80852 29732642
    462843 6ezy:B (2.35) BS02 GS8 2.5.1.18 GO:0000325 ... O80852 29732642
    462844 6ezz:A (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46883 30110143
    462845 6ezz:A (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    462846 6ezz:B (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46883 30110143
    462847 6ezz:B (1.8) BS02 CA 1.4.3.21 GO:0005507 ... P46883 30110143
    462848 6f01:B (2.5) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642
    462849 6f01:B (2.5) BS02 GS8 2.5.1.18 GO:0000325 ... O80852 29732642
    462850 6f05:A (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462851 6f05:B (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462852 6f05:C (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462853 6f05:D (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462854 6f05:E (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462855 6f05:F (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462856 6f05:G (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462857 6f05:H (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462858 6f05:I (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462859 6f05:J (2.2) BS01 GTS 2.5.1.18 GO:0000325 ... O80852 29732642 MOAD: Ki=34uM
    462860 6f06:A (2.02) BS01 C7T 3.4.22.15 GO:0006508 ... P07711 29590750 BindingDB: IC50=5.2nM
    462861 6f06:A (2.02) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462862 6f06:A (2.02) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462863 6f06:A (2.02) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462864 6f06:A (2.02) BS05 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462865 6f06:A (2.02) BS06 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462866 6f06:A (2.02) BS07 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462867 6f06:B (2.02) BS01 C7T 3.4.22.15 GO:0006508 ... P07711 29590750 BindingDB: IC50=5.2nM
    462868 6f06:B (2.02) BS02 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462869 6f06:B (2.02) BS03 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462870 6f06:B (2.02) BS04 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462871 6f06:B (2.02) BS05 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462872 6f06:B (2.02) BS06 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462873 6f06:B (2.02) BS07 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462874 6f06:B (2.02) BS08 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462875 6f06:B (2.02) BS09 ZN 3.4.22.15 GO:0006508 ... P07711 29590750
    462876 6f07:B (3.6) BS01 ZN ? GO:0000775 ... P40969 29212814
    462877 6f07:B (3.6) BS02 ZN ? GO:0000775 ... P40969 29212814
    462878 6f08:A (1.9) BS01 peptide ? GO:0000122 ... P63104 29408703
    462879 6f08:A (1.9) BS02 peptide ? GO:0000122 ... P63104 29408703
    462880 6f08:B (1.9) BS01 peptide ? GO:0000122 ... P63104 29408703
    462881 6f08:I (1.9) BS01 peptide ? GO:0000122 ... P63104 29408703
    462882 6f08:I (1.9) BS02 peptide ? GO:0000122 ... P63104 29408703
    462883 6f08:J (1.9) BS01 peptide ? GO:0000122 ... P63104 29408703
    462884 6f09:P (1.594) BS01 peptide ? GO:0000122 ... P63104 29473952
    462885 6f09:Q (1.594) BS01 peptide ? GO:0000122 ... P63104 29473952
    462886 6f09:R (1.594) BS01 peptide ? GO:0000122 ... P63104 29473952
    462887 6f09:S (1.594) BS01 peptide ? GO:0000122 ... P63104 29473952
    462888 6f0a:A (2.26) BS01 C82 1.13.11.52 GO:0002376 ... P14902 29240291 MOAD: ic50=11.3mM
    462889 6f0a:A (2.26) BS02 ALA 1.13.11.52 GO:0002376 ... P14902 29240291
    462890 6f0a:A (2.26) BS03 HEM 1.13.11.52 GO:0002376 ... P14902 29240291
    462891 6f0a:C (2.26) BS01 C82 1.13.11.52 GO:0002376 ... P14902 29240291 MOAD: ic50=11.3mM
    462892 6f0a:C (2.26) BS02 ALA 1.13.11.52 GO:0002376 ... P14902 29240291
    462893 6f0a:C (2.26) BS03 HEM 1.13.11.52 GO:0002376 ... P14902 29240291
    462894 6f0b:A (2.8) BS01 HEM ? GO:0004497 ... Q8VS75 30516965
    462895 6f0b:A (2.8) BS02 C8H ? GO:0004497 ... Q8VS75 30516965
    462896 6f0c:A (1.7) BS01 HEM ? GO:0004497 ... Q8VS75 30516965
    462897 6f0c:A (1.7) BS02 C8B ? GO:0004497 ... Q8VS75 30516965
    462898 6f0e:A (2.6) BS01 C8K ? GO:0000139 ... P24280 29307839
    462899 6f0f:A (2.0) BS01 peptide ? GO:0005634 ... Q9Y294 31543461
    462900 6f0g:A (2.3) BS01 peptide ? GO:0005634 ... Q9Y294 31543461
    462901 6f0g:B (2.3) BS01 peptide ? GO:0005634 ... Q9Y294 31543461
    462902 6f0h:A (1.98) BS01 peptide ? GO:0005634 ... Q9Y294 31543461
    462903 6f0h:C (1.98) BS01 peptide ? GO:0005634 ... Q9Y294 31543461
    462904 6f0h:C (1.98) BS02 peptide ? GO:0005634 ... Q9Y294 31543461
    462905 6f0k:A (3.87) BS01 HEC ? GO:0016020 ... D0MDD4 29712914
    462906 6f0k:A (3.87) BS02 HEC ? GO:0016020 ... D0MDD4 29712914
    462907 6f0k:A (3.87) BS03 HEC ? GO:0016020 ... D0MDD4 29712914
    462908 6f0k:A (3.87) BS04 HEC ? GO:0016020 ... D0MDD4 29712914
    462909 6f0k:A (3.87) BS05 HEC ? GO:0016020 ... D0MDD4 29712914
    462910 6f0k:B (3.87) BS01 HEC ? N/A D0MDD5 29712914
    462911 6f0k:B (3.87) BS02 HEC ? N/A D0MDD5 29712914
    462912 6f0k:B (3.87) BS03 F3S ? N/A D0MDD5 29712914
    462913 6f0k:B (3.87) BS04 SF4 ? N/A D0MDD5 29712914
    462914 6f0k:B (3.87) BS05 SF4 ? N/A D0MDD5 29712914
    462915 6f0k:B (3.87) BS06 SF4 ? N/A D0MDD5 29712914
    462916 6f0k:C (3.87) BS01 HEC ? GO:0005886 ... D0MDD6 29712914
    462917 6f0k:E (3.87) BS01 HEC ? GO:0009055 ... D0MDD8 29712914
    462918 6f0k:E (3.87) BS02 HEC ? GO:0009055 ... D0MDD8 29712914
    462919 6f0l:2 (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P29469 29269875
    462920 6f0l:2 (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 29269875
    462921 6f0l:3 (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P24279 29269875
    462922 6f0l:3 (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29269875
    462923 6f0l:5 (4.77) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 29269875
    462924 6f0l:5 (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29269875
    462925 6f0l:A (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P29469 29269875
    462926 6f0l:A (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 29269875
    462927 6f0l:B (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P24279 29269875
    462928 6f0l:B (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 29269875
    462929 6f0l:C (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P30665 29269875
    462930 6f0l:D (4.77) BS01 dna 3.6.4.12 GO:0000727 ... P29496 29269875
    462931 6f0l:D (4.77) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 29269875
    462932 6f0l:D (4.77) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 29269875
    462933 6f0w:A (1.301) BS01 peptide 1.14.11.29 GO:0005506 ... I6QVT6 30519597
    462934 6f0w:A (1.301) BS02 MN 1.14.11.29 GO:0005506 ... I6QVT6 30519597
    462935 6f0x:A (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    462936 6f0x:B (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    462937 6f0x:C (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    462938 6f0x:D (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    462939 6f0x:E (4.6) BS01 AGS ? GO:0001556 ... Q15645 29973720
    462940 6f0x:Z (4.6) BS01 peptide ? GO:0000070 ... Q13257 29973720
    462941 6f0y:A (-1.00) BS01 peptide ? GO:0005634 ... P32447 29300933
    462942 6f14:A (1.867) BS01 peptide 2.7.11.11 GO:0000287 ... P25321 N/A
    462943 6f14:A (1.867) BS02 ISQ 2.7.11.11 GO:0000287 ... P25321 N/A
    462944 6f17:A (1.45) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462945 6f18:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462946 6f18:A (1.8) BS02 EEE 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462947 6f19:A (1.895) BS01 EEE 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462948 6f19:A (1.895) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462949 6f1a:A (2.399) BS01 EEE 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462950 6f1a:A (2.399) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 N/A
    462951 6f1c:A (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462952 6f1c:A (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462953 6f1c:A (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462954 6f1c:B (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462955 6f1c:B (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462956 6f1c:B (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462957 6f1c:C (4.2) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462958 6f1c:C (4.2) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462959 6f1c:C (4.2) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462960 6f1c:D (4.2) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462961 6f1c:D (4.2) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462962 6f1c:D (4.2) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462963 6f1d:A (1.95) BS01 CA 3.4.21.41 N/A P00736 29311313
    462964 6f1g:A (1.672) BS01 AHR 3.2.1.99 GO:0004553 ... B3EYM8 N/A
    462965 6f1g:A (1.672) BS02 AHR 3.2.1.99 GO:0004553 ... B3EYM8 N/A
    462966 6f1g:A (1.672) BS03 AHR 3.2.1.99 GO:0004553 ... B3EYM8 N/A
    462967 6f1g:A (1.672) BS04 AHR 3.2.1.99 GO:0004553 ... B3EYM8 N/A
    462968 6f1h:A (4.5) BS01 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462969 6f1h:A (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462970 6f1h:A (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462971 6f1h:B (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462972 6f1h:B (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462973 6f1h:B (4.5) BS03 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462974 6f1h:C (4.5) BS01 LYS 3.4.21.41 GO:0005509 ... P00736 29311313
    462975 6f1h:C (4.5) BS02 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462976 6f1h:C (4.5) BS03 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462977 6f1h:C (4.5) BS04 CA 3.4.21.41 GO:0005509 ... P00736 29311313
    462978 6f1h:D (4.5) BS01 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462979 6f1h:D (4.5) BS02 CA 3.4.21.42 GO:0005509 ... P09871 29311313
    462980 6f1j:A (1.25) BS01 EDG 3.2.1.55 GO:0046373 ... A0A2H5BN17 30084398 MOAD: Kd=24uM
    462981 6f1j:B (1.25) BS01 ZN 3.2.1.55 GO:0046373 ... A0A2H5BN17 30084398
    462982 6f1j:B (1.25) BS02 EDG 3.2.1.55 GO:0046373 ... A0A2H5BN17 30084398 MOAD: Kd=24uM
    462983 6f1k:A (2.2) BS01 dna 2.4.2.-
    2.4.2.30
    N/A Q9UGN5 30321391
    462984 6f1n:A (2.09) BS01 C8W 3.6.4.10 GO:0005524 ... P07900 29768913 MOAD: Kd=0.000000064M
    462985 6f1p:A (1.12) BS01 PO4 3.2.1.17 GO:0003796 ... P00698 29717719
    462986 6f1p:A (1.12) BS02 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    462987 6f1p:A (1.12) BS03 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    462988 6f1p:A (1.12) BS04 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    462989 6f1q:A (2.3) BS01 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    462990 6f1q:A (2.3) BS02 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    462991 6f1q:A (2.3) BS03 HEC 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    462992 6f1r:A (1.1) BS01 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    462993 6f1r:A (1.1) BS02 CL 3.2.1.17 GO:0003796 ... P00698 29717719
    462994 6f1r:A (1.1) BS03 NA 3.2.1.17 GO:0003796 ... P00698 29717719
    462995 6f1t:A (3.5) BS01 ADP ? N/A F2Z5G5 29420470
    462996 6f1t:B (3.5) BS01 ADP ? N/A F2Z5G5 29420470
    462997 6f1t:C (3.5) BS01 ADP ? N/A F2Z5G5 29420470
    462998 6f1t:D (3.5) BS01 ADP ? N/A F2Z5G5 29420470
    462999 6f1t:E (3.5) BS01 ADP ? N/A F2Z5G5 29420470
    463000 6f1t:F (3.5) BS01 peptide ? N/A F2Z5G5 29420470

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).