SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46201 1r27:B (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46202 1r27:B (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46203 1r27:B (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46204 1r27:C (2.0) BS01 MO 1.7.5.1 GO:0005515 ... P09152 14725769
    46205 1r27:C (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P09152 14725769
    46206 1r27:C (2.0) BS03 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    46207 1r27:C (2.0) BS04 MGD 1.7.5.1 GO:0005515 ... P09152 14725769
    46208 1r27:D (2.0) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 14725769
    46209 1r27:D (2.0) BS02 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46210 1r27:D (2.0) BS03 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46211 1r27:D (2.0) BS04 SF4 1.7.5.1 GO:0005515 ... P11349 14725769
    46212 1r2b:A (2.2) BS01 peptide ? N/A P41182 14690607
    46213 1r2b:A (2.2) BS02 peptide ? N/A P41182 14690607
    46214 1r2b:B (2.2) BS01 peptide ? N/A P41182 14690607
    46215 1r2b:B (2.2) BS02 peptide ? N/A P41182 14690607
    46216 1r2c:C (2.86) BS01 HEM ? GO:0005506 ... P07173 15073325
    46217 1r2c:C (2.86) BS02 HEM ? GO:0005506 ... P07173 15073325
    46218 1r2c:C (2.86) BS03 HEM ? GO:0005506 ... P07173 15073325
    46219 1r2c:C (2.86) BS04 HEM ? GO:0005506 ... P07173 15073325
    46220 1r2c:L (2.86) BS01 BCB ? GO:0009772 ... P06009 15073325
    46221 1r2c:L (2.86) BS02 BCB ? GO:0009772 ... P06009 15073325
    46222 1r2c:L (2.86) BS03 BPB ? GO:0009772 ... P06009 15073325
    46223 1r2c:L (2.86) BS04 UQ2 ? GO:0009772 ... P06009 15073325
    46224 1r2c:L (2.86) BS05 FE2 ? GO:0009772 ... P06009 15073325
    46225 1r2c:L (2.86) BS06 BCB ? GO:0009772 ... P06009 15073325
    46226 1r2c:L (2.86) BS07 BPB ? GO:0009772 ... P06009 15073325
    46227 1r2c:L (2.86) BS08 MQ7 ? GO:0009772 ... P06009 15073325
    46228 1r2c:M (2.86) BS01 BCB ? GO:0009772 ... P06010 15073325
    46229 1r2c:M (2.86) BS02 BCB ? GO:0009772 ... P06010 15073325
    46230 1r2c:M (2.86) BS03 BPB ? GO:0009772 ... P06010 15073325
    46231 1r2c:M (2.86) BS04 FE2 ? GO:0009772 ... P06010 15073325
    46232 1r2c:M (2.86) BS05 BCB ? GO:0009772 ... P06010 15073325
    46233 1r2c:M (2.86) BS06 BCB ? GO:0009772 ... P06010 15073325
    46234 1r2c:M (2.86) BS07 BPB ? GO:0009772 ... P06010 15073325
    46235 1r2c:M (2.86) BS08 MQ7 ? GO:0009772 ... P06010 15073325
    46236 1r2c:M (2.86) BS09 NS5 ? GO:0009772 ... P06010 15073325
    46237 1r2f:A (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    46238 1r2f:A (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    46239 1r2f:B (2.1) BS01 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    46240 1r2f:B (2.1) BS02 FE 1.17.4.1 GO:0004748 ... P17424 9748343
    46241 1r2j:A (2.1) BS01 FAD ? GO:0003995 ... Q9KIE5 14623185
    46242 1r2m:A (1.0) BS01 MN ? GO:0005576 ... P79073 14555650
    46243 1r2n:A (-1.00) BS01 RET ? GO:0005216 ... P02945 12119389
    46244 1r2q:A (1.05) BS01 MG 3.6.5.2 GO:0003924 ... P20339 14684892
    46245 1r2q:A (1.05) BS02 GNP 3.6.5.2 GO:0003924 ... P20339 14684892
    46246 1r2r:B (1.5) BS01 MG 4.2.3.3
    5.3.1.1
    GO:0004807 ... P00939 14643664
    46247 1r2u:A (-1.00) BS01 CA ? GO:0005509 ... Q7ZZB9 15109253
    46248 1r2y:A (2.34) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46249 1r2y:A (2.34) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46250 1r2y:A (2.34) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46251 1r2z:A (1.63) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46252 1r2z:A (1.63) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46253 1r2z:A (1.63) BS03 ZN 3.2.2.23
    4.2.99.18
    GO:0003676 ... P84131 14525999
    46254 1r30:A (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    46255 1r30:A (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    46256 1r30:A (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    46257 1r30:A (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    46258 1r30:B (3.4) BS01 SAM 2.8.1.6 GO:0003824 ... P12996 14704425
    46259 1r30:B (3.4) BS02 SF4 2.8.1.6 GO:0003824 ... P12996 14704425
    46260 1r30:B (3.4) BS03 FES 2.8.1.6 GO:0003824 ... P12996 14704425
    46261 1r30:B (3.4) BS04 DTB 2.8.1.6 GO:0003824 ... P12996 14704425
    46262 1r31:A (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    46263 1r31:A (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    46264 1r31:B (2.1) BS01 COA 1.1.1.88 GO:0004420 ... P13702 N/A
    46265 1r31:B (2.1) BS02 MEV 1.1.1.88 GO:0004420 ... P13702 N/A
    46266 1r33:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    46267 1r33:A (1.8) BS02 LKA 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.07mM
    46268 1r34:A (1.95) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 N/A
    46269 1r34:A (1.95) BS02 LKS 3.2.1.114 GO:0000139 ... Q24451 N/A MOAD: ic50=0.9mM
    46270 1r35:A (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    46271 1r35:A (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    46272 1r35:A (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    46273 1r35:B (2.3) BS01 HEM 1.14.13.39 GO:0004517 ... P29477 14599013
    46274 1r35:B (2.3) BS02 H4B 1.14.13.39 GO:0004517 ... P29477 14599013
    46275 1r35:B (2.3) BS03 I58 1.14.13.39 GO:0004517 ... P29477 14599013 MOAD: ic50=6.09uM
    46276 1r37:A (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    46277 1r37:A (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    46278 1r37:A (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    46279 1r37:A (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    46280 1r37:B (2.3) BS01 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    46281 1r37:B (2.3) BS02 ZN 1.1.1.1 GO:0004022 ... P39462 14661950
    46282 1r37:B (2.3) BS03 NAD 1.1.1.1 GO:0004022 ... P39462 14661950 MOAD: Kd=0.66uM
    46283 1r37:B (2.3) BS04 ETX 1.1.1.1 GO:0004022 ... P39462 14661950
    46284 1r38:A (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    46285 1r38:B (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    46286 1r38:C (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    46287 1r38:D (2.2) BS01 NAP 1.1.1.307 GO:0016491 ... O74237 15109252
    46288 1r3c:A (2.0) BS01 MG 2.7.11.24 GO:0000165 ... Q16539 14726206
    46289 1r3e:A (2.1) BS01 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    46290 1r3e:A (2.1) BS02 rna 5.4.99.25 GO:0001522 ... Q9WZW0 14566049
    46291 1r3n:A (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46292 1r3n:A (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46293 1r3n:A (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46294 1r3n:B (2.7) BS01 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46295 1r3n:B (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46296 1r3n:B (2.7) BS03 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46297 1r3n:C (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46298 1r3n:C (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46299 1r3n:C (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46300 1r3n:D (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46301 1r3n:D (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46302 1r3n:D (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46303 1r3n:E (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46304 1r3n:E (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46305 1r3n:E (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46306 1r3n:E (2.7) BS04 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46307 1r3n:F (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46308 1r3n:F (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46309 1r3n:G (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46310 1r3n:G (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46311 1r3n:G (2.7) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46312 1r3n:H (2.7) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46313 1r3n:H (2.7) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46314 1r3q:A (1.7) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    46315 1r3s:A (1.65) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    46316 1r3t:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    46317 1r3u:A (2.5) BS01 MG 2.4.2.8 GO:0000287 ... Q8R7L0 N/A
    46318 1r3u:B (2.5) BS01 MG 2.4.2.8 GO:0000287 ... Q8R7L0 N/A
    46319 1r3v:A (1.9) BS01 1CP 4.1.1.37 GO:0004853 ... P06132 14633982
    46320 1r3w:A (1.7) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    46321 1r3y:A (1.755) BS01 CP3 4.1.1.37 GO:0004853 ... P06132 14633982
    46322 1r42:A (2.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    46323 1r43:A (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46324 1r43:A (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46325 1r43:B (2.8) BS01 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46326 1r43:B (2.8) BS02 ZN 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46327 1r43:B (2.8) BS03 BIB 3.5.1.6 GO:0003837 ... Q96W94 14534321
    46328 1r44:A (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46329 1r44:B (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46330 1r44:C (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46331 1r44:D (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46332 1r44:E (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46333 1r44:F (2.25) BS01 ZN 3.4.13.22 GO:0006508 ... Q06241 9702193
    46334 1r47:A (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    46335 1r47:B (3.45) BS01 GAL 3.2.1.22 GO:0003824 ... P06280 15003450
    46336 1r49:A (3.13) BS01 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    46337 1r49:A (3.13) BS02 dna 5.6.2.1 GO:0003677 ... P11387 14594810
    46338 1r4a:A (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    46339 1r4a:A (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    46340 1r4a:B (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    46341 1r4a:B (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    46342 1r4a:C (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    46343 1r4a:C (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    46344 1r4a:D (2.3) BS01 MG ? GO:0000139 ... P61212 14718928
    46345 1r4a:D (2.3) BS02 GNP ? GO:0000139 ... P61212 14718928
    46346 1r4f:A (2.3) BS01 CA 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    46347 1r4f:B (2.3) BS01 CA 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    46348 1r4f:B (2.3) BS02 AD3 3.2.2.1 GO:0005829 ... Q9GPQ4 15050818
    46349 1r4i:A (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    46350 1r4i:A (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    46351 1r4i:A (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    46352 1r4i:A (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    46353 1r4i:B (3.1) BS01 dna ? GO:0003700 ... P15207 15037741
    46354 1r4i:B (3.1) BS02 dna ? GO:0003700 ... P15207 15037741
    46355 1r4i:B (3.1) BS03 ZN ? GO:0003700 ... P15207 15037741
    46356 1r4i:B (3.1) BS04 ZN ? GO:0003700 ... P15207 15037741
    46357 1r4l:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895
    46358 1r4l:A (3.0) BS02 XX5 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 14754895 BindingDB: IC50=0.44nM
    46359 1r4m:F (3.0) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46360 1r4m:H (3.0) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46361 1r4n:B (3.6) BS01 ATP 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46362 1r4n:D (3.6) BS01 ATP 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46363 1r4n:F (3.6) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46364 1r4n:F (3.6) BS02 ATP 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46365 1r4n:H (3.6) BS01 ZN 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46366 1r4n:H (3.6) BS02 ATP 6.2.1.64 GO:0005515 ... Q8TBC4 14690597
    46367 1r4o:A (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    46368 1r4o:A (2.5) BS02 dna ? GO:0003700 ... P06536 1865905
    46369 1r4o:A (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    46370 1r4o:A (2.5) BS04 ZN ? GO:0003700 ... P06536 1865905
    46371 1r4o:B (2.5) BS01 dna ? GO:0003700 ... P06536 1865905
    46372 1r4o:B (2.5) BS02 ZN ? GO:0003700 ... P06536 1865905
    46373 1r4o:B (2.5) BS03 ZN ? GO:0003700 ... P06536 1865905
    46374 1r4p:A (1.77) BS01 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46375 1r4p:A (1.77) BS02 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46376 1r4p:A (1.77) BS03 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46377 1r4p:A (1.77) BS04 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46378 1r4p:A (1.77) BS05 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46379 1r4p:A (1.77) BS06 FMT 3.2.2.22 GO:0005576 ... P09385 15075327
    46380 1r4p:B (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    46381 1r4p:C (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    46382 1r4p:C (1.77) BS02 1PS ? GO:0005576 ... P09386 15075327
    46383 1r4p:C (1.77) BS03 FMT ? GO:0005576 ... P09386 15075327
    46384 1r4p:D (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    46385 1r4p:D (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    46386 1r4p:E (1.77) BS01 FMT ? GO:0005576 ... P09386 15075327
    46387 1r4p:E (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    46388 1r4p:F (1.77) BS01 1PS ? GO:0005576 ... P09386 15075327
    46389 1r4p:F (1.77) BS02 FMT ? GO:0005576 ... P09386 15075327
    46390 1r4r:A (3.0) BS01 dna ? GO:0003700 ... P06536 1865905
    46391 1r4r:A (3.0) BS02 dna ? GO:0003700 ... P06536 1865905
    46392 1r4r:A (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    46393 1r4r:A (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    46394 1r4r:B (3.0) BS01 dna ? GO:0003700 ... P06536 1865905
    46395 1r4r:B (3.0) BS02 dna ? GO:0003700 ... P06536 1865905
    46396 1r4r:B (3.0) BS03 ZN ? GO:0003700 ... P06536 1865905
    46397 1r4r:B (3.0) BS04 ZN ? GO:0003700 ... P06536 1865905
    46398 1r4s:A (1.8) BS01 CYS 1.7.3.3 GO:0004846 ... Q00511 14993669
    46399 1r4s:A (1.8) BS02 MUA 1.7.3.3 GO:0004846 ... Q00511 14993669
    46400 1r4u:A (1.65) BS01 OXC 1.7.3.3 GO:0004846 ... Q00511 14993669

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).